introduction contents - biomedical engineering · 2.5 computer-assisted robot-guided laser...
TRANSCRIPT
Introduction
Biomedical Image Analysis
Prof. Dr. Philippe Cattin
MIAC, University of Basel
Feb 22nd, 2016
Feb 22nd, 2016Biomedical Image Analysis
1 of 27 21.02.2016 22:30
Contents
2
4
5
8
9
10
12
13
14
15
16
17
18
20
21
22
23
24
26
27
28
30
31
32
33
Prof. Dr. Philippe Cattin: Introduction
Contents
Abstract
1 Varia
About Me
About these Slides
2 My Research
2.1 Segmentation
Segmentation of Facial Soft Tissues
Segmentation of Spinal-Cord
Segmentation of Spinal-Cord (2)
2.2 Organ Motion
4D MRI
Mathematical Motion Model
Principle/Motivation for MRgHIFU
Motion Compensation Result
Prediction from 2D Ultrasound
MR and Ultrasound Fusion
Prediction Results
2.3 Registration
Smooth Deformation Model
Artificial Example
Example Registration with our Liver Images
Example with our Liver Images
Lung Motion
2.4 Augmented Reality and Navigation
ARALPAN: Intra-op AR System
Tablet-based Image-guided Therapy
Inertia-based Navigation
2.5 Computer-Assisted Robot-guided Laser Osteotome
Computer-Assisted Robot-guided Laser Osteotome
SEM of Natural Bone
SEM Piezoosteotome Cut Bone
Laser Cut Bone
Feb 22nd, 2016Biomedical Image Analysis
2 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
(2)
Prof. Dr. Philippe Cattin: Introduction
Abstract
A short overview of the Medical Imaging Analysis projects that my group conducts.
3 of 27 21.02.2016 22:30
Varia
Feb 22nd, 2016Biomedical Image Analysis
(4)About Me
My Name: Philippe C. Cattin
Apprenticeship at BBC/ABB Baden (Physics Laboratory Technician)
HTL Brugg-Windisch (Computer Science)
ETH Zurich (Computer Science)
Ph.D. at the Institute of Robotics, ETH Zurich
"Biometric Authentication System Using Human Gait"
Post-Doc at the Computer Vision Lab, ETH Zurich
Head of the Medical Image Analysis Group, ETH Zurich
Assoc. Professor at the Medical Faculty of the University Basel
Name of the group "Medical Image Analysis Center (MIAC)"
4 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Varia
(5)
Prof. Dr. Philippe Cattin: Introduction
About these Slides
Generated with → hotspot/kilauea [http://www.sharpeleven.net/kilauea/]
All hotspot presentations are generated from an XML source file
A table of contents as well as all outline slides are generated automatically
Also usefull for online presentations
Allows to easily include formulas such as
Hotspot/Kilauea is not usefull if you prefer a GUI
5 of 27 21.02.2016 22:30
My Research
Segmentation
Feb 22nd, 2016Biomedical Image Analysis
(8)Segmentation of Facial Soft Tissues
Incorporation of statistical shape knowledge into the graph-cut segmentation process.
Masseter muscleChallenging task due to the high density artefacts
6 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Segmentation
(9)
Prof. Dr. Philippe Cattin: Introduction
Segmentation of Spinal-Cord
Segmentation for sub-voxel atrophy measurement
(red) background, (green) foreground, (yellow)
automatic segmentation
(red) background, (green) foreground, (yellow)
automatic segmentationfine segmentation
7 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Segmentation
(10)
Prof. Dr. Philippe Cattin: Introduction
Segmentation of Spinal-Cord (2)
Precision of of the area that corresponds to in the radius
8 of 27 21.02.2016 22:30
Organ Motion
Feb 22nd, 2016Biomedical Image Analysis
(12)4D MRI
Voxelsize , Frequency
Maximum Intensity Projection of the right liver lobe 4D Lung reconstruction, 24 sagittal slices, 11 stacks
9 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Organ Motion
(13)
Prof. Dr. Philippe Cattin: Introduction
Mathematical Motion Model
4-Dimensional statistical liver motion model
10 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Organ Motion
(14)
Prof. Dr. Philippe Cattin: Introduction
Principle/Motivation for MRgHIFU
Advantages
No radiation or chemotherapy
No bleeding
No surgery
Faster recovery
Minimal side effects
Principle of HIFU
HIFU Ablation
Respiratory Motion
11 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Organ Motion
(15)
Prof. Dr. Philippe Cattin: Introduction
Motion Compensation Result
Prediction error with the atlas based approach
12 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Organ Motion
(16)
Prof. Dr. Philippe Cattin: Introduction
Prediction from 2D Ultrasound
Given
A static 3D exhalation CT image
2D/3D Ultrasound image of the liver
Output
Prediction of the liver/lung position
13 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Organ Motion
(17)
Prof. Dr. Philippe Cattin: Introduction
MR and Ultrasound Fusion
14 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Organ Motion
(18)
Prof. Dr. Philippe Cattin: Introduction
Prediction Results
15 of 27 21.02.2016 22:30
Registration
Feb 22nd, 2016Biomedical Image Analysis
(20)Smooth Deformation Model
16 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Registration
(21)
Prof. Dr. Philippe Cattin: Introduction
Artificial Example
Reference image Floating image Motion field
17 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Registration
(22)
Prof. Dr. Philippe Cattin: Introduction
Example Registration with our Liver Images
Variational approach that simultaneously segments and registers.
Reference image Floating image Motion segmentation
(continuous cuts)
Motion field
18 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Registration
(23)
Prof. Dr. Philippe Cattin: Introduction
Example with our Liver Images
Motion segmentation and motion field
19 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Registration
(24)
Prof. Dr. Philippe Cattin: Introduction
Lung Motion
20 of 27 21.02.2016 22:30
Augmented Reality and Navigation
Feb 22nd, 2016Biomedical Image Analysis
(26)ARALPAN: Intra-op AR System
21 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Augmented Reality and Navigation
(27)
Prof. Dr. Philippe Cattin: Introduction
Tablet-based Image-guided Therapy
22 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Augmented Reality and Navigation
(28)
Prof. Dr. Philippe Cattin: Introduction
Inertia-based Navigation
23 of 27 21.02.2016 22:30
Computer-Assisted Robot-guided LaserOsteotome
Feb 22nd, 2016Biomedical Image Analysis
(30)Computer-Assisted Robot-guided Laser Osteotome
24 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Computer-Assisted Robot-guided Laser Osteotome
(31)
Prof. Dr. Philippe Cattin: Introduction
SEM of Natural Bone
25 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Computer-Assisted Robot-guided Laser Osteotome
(32)
Prof. Dr. Philippe Cattin: Introduction
SEM Piezoosteotome Cut Bone
26 of 27 21.02.2016 22:30
Feb 22nd, 2016Biomedical Image Analysis
Computer-Assisted Robot-guided Laser Osteotome
(33)
Prof. Dr. Philippe Cattin: Introduction
Laser Cut Bone
27 of 27 21.02.2016 22:30