iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

27th Annual Human-Computer Interaction Lab SymposiumMay 27-28 2010 College Park MD

iOpener Workbench

iOpener Workbench

Contribution

bull Infrastructure for rapidly summarizing scientific endeavorndash Integrate statistics visualization reference

management and automatic summarizationndash Multiple coordinated views

Use Cases

bull Learn about new fieldsbull Understand how communities formbull Analyze citation patterns within communitiesbull Easily explore amp export all papers in a

community

What we integrate

bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization

bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features

for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts

What can you do with a graph

bull Statistics lists and text is helpful butbull Visualizations show unexpected trends

clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions

you didnt know you hadrdquo ndash Ben S

Importance of Survey Articles

bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes

bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers

iOPENER

bull NSF Info Integration amp Informatics program bull Information Organization for PENning

Expositions on Research

Components

bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Use Cases

bull Learn about new fieldsbull Understand how communities formbull Analyze citation patterns within communitiesbull Easily explore amp export all papers in a

community

What we integrate

bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization

bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features

for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts

What can you do with a graph

bull Statistics lists and text is helpful butbull Visualizations show unexpected trends

clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions

you didnt know you hadrdquo ndash Ben S

Importance of Survey Articles

bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes

bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers

iOPENER

bull NSF Info Integration amp Informatics program bull Information Organization for PENning

Expositions on Research

Components

bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

What we integrate

bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization

bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features

for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts

What can you do with a graph

bull Statistics lists and text is helpful butbull Visualizations show unexpected trends

clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions

you didnt know you hadrdquo ndash Ben S

Importance of Survey Articles

bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes

bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers

iOPENER

bull NSF Info Integration amp Informatics program bull Information Organization for PENning

Expositions on Research

Components

bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

What can you do with a graph

bull Statistics lists and text is helpful butbull Visualizations show unexpected trends

clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions

you didnt know you hadrdquo ndash Ben S

Importance of Survey Articles

bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes

bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers

iOPENER

bull NSF Info Integration amp Informatics program bull Information Organization for PENning

Expositions on Research

Components

bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Importance of Survey Articles

bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes

bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers

iOPENER

bull NSF Info Integration amp Informatics program bull Information Organization for PENning

Expositions on Research

Components

bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

iOPENER

bull NSF Info Integration amp Informatics program bull Information Organization for PENning

Expositions on Research

Components

bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Components

bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Ongoing Work

bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension

bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology

Network (AAN)

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Coming Soon

bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts

using their datandash close participant observation

bull Software amp generated surveys publicly available and presented to academia and wider audiences

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

iOpener Workbench

bull Infrastructure to aid rapid summarization of scientific literature

bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

iOpener Workbench Tools for Rapid Understanding of Scientific Literature

Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu

tangrasiumicheduclairiopener

This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research

Domains jointly awarded to UMD and UMich as IIS 0705832

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Network Analysis

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Reference Manager

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Document amp Citation View

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Summarization

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Features ndash Network analysis

bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)

bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Features ndash Reference Manager

bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008

bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Document view - features

bull Citation linksbull Highlighting

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features

Summarization - Features

bull Automatically generated summaries Citation text keywords abstracts

bull Working to substantially improve coherence amp relevance

• iOpener Workbench Tools for Rapid Understanding of Scientific
• iOpener Workbench
• Contribution
• Use Cases
• What we integrate
• What can you do with a graph
• Importance of Survey Articles
• iOPENER
• Components
• Ongoing Work
• Coming Soon
• iOpener Workbench (2)
• iOpener Workbench Tools for Rapid Understanding of Scientific (2)
• Network Analysis
• Reference Manager
• Document amp Citation View
• Summarization
• Features ndash Network analysis
• Features ndash Reference Manager
• Document view - features
• Summarization - Features