JACQ / 2015-09-18

WS Caryophyllales Conf

Historical Aspects of Vienna Herbaria Beck von Managetta 1888/1889

• Foundation1807 botanical collections are art of the “Hofnaturalienkabinett” (600 species)1810 2 rooms in Museumbuilding in Vienna, Josephsplatz 1 Herbarium (500 fascicles) and wax models / Trattinnick1836 Brazilian Museum incorported in general collection

System: separate herbaria no systematic arrangement

1844-1845 transfer of collections to Museumbuilding of University(60.000 “Species”) / Endlicher sub Dir. von SchreibersSystem: Endlicher / Generalherbarium

1849-1879 remarkable acquisitions exchange, gifts and purchase / Fenzl

• Ringstraße --> 18891884 transfer of collections originating from the “k.k. Hofcabinets” to new Museum of

Natural History (3.600 fascicles)Foundation of a second herbarium at the University of Vienna

1889 4.500 fascicles / Beck von ManagettaSystem: Bentham & Hooker

ff. 2 separate HerbariaHerbarium W 4 mio “Phanerogams” / 1,5 mio “Cryptogams”System: Brummit & Powell - alphabetic

Herbarium WU 1 mio “Phanerogams” / 400 k “Cryptogams” System: Dalla Torre & Harms - systematic

Herbarium QCNE, Quito, Ecuador

Botucatu 2013-08-20

Arbeiten in Herbarien

Herbarium QCNE – Herbario Nacional de Ecuador, Quito

work in Herbarium

Botucatu 2013-08-20Neill et al. 6160 – Rollinia Maas et al. 1997: Rollinia chrysocarpa Annona chrysocarpa

modern specimens

Scope & Coverage Local / Regional / National / International --> multiple institutions

Modules Botanical --> Specimens&Observations, incl. Nomenclature, Taxonomy, ChorologyBibliographic --> native Literature References, incl. links to external sources

HandlingData Input manual, incl. import via standardized import format (CSV files)GUI unilingual - Content multilingual

ImagingTIF or JPG files linked to records via naming conventions --> simple workflowLicensing Information embedded

Outline

Workflow Diagram

specimen names taxonomic backbone

monographsrevisions

florasarticle-level

protologuesgeographic reference

actor / person / team institution / collection

type

external references (IPNI, IF, TPL, Tropicos, Fbras; HUH; geonames; BHL / DOIs)(G)UID

det. classifications

Datamodel simplified

MS Access

• local installation

• standalone• non public

LAMP

• Custom PHP4/5 Code

• MySQL 4.5

Unicode

Yii/Yii2

• PHP Framework for Rapid Application Development

JavaEE

• Service Oriented Architecture

• JavaEE Standards (Framework Independent)

System – SW & HW & Digital Images

EUROGARD VII, Paris, 2015-07-06

pre 2000 2004 2009 2012 2014 2015 ff.

PC Physical Server

DevelopInput

AccessWeb

Virtual Infrastructur

e

local File-System Images Server Instances

Archivalnon Archival

System – Topology

2000WU

2004 2005 2008W GZU / GJO (+) HAL / JE / HerbDrogMus / HerbPilsl

2009 2011TGU MJG / KUFS

2012/BRNU / KFTA / LAGU / LW / LWKS / LWS / LZ / Univ. Tunceli Turkey

2013 2014BAK / CHER / GAT / HERZ / LECB / OLD / PRC B / ERE / NS / NSK

2015FT / TBI / TMRC / UBT

Czech Museums , University Krakow

Institutions

Content / 20150908

Specimens 626.750 / 197.956 images onlineTypes 133.653 / typisified Names 74.175 (Genera, Speceis and below)

Scientific Names 334.838 / Genera 36.213 / Families 3.421

nomenclatoral Authors & Authorteams 98.598

Collectors and Collectorteams 24.207 / 9.913

Literature Citations 29.729

Synonyms 217.255 (= links from one Taxon Name to another)

Classifications 111.560 Parental-Child-Relations based on 2.446 Lit Citations

Content

Classifications & FlorasDalla Torre & Harms – families and higher – finished

for special groups infrafamiliar–classifications availableAnnonaceae, Ebenaceae, Myristicaceae , Poaceae

Cronquist 1981 – finished

Exkursionsflora von Österreich Ed. 3 (2008) – finishedEd. 1 & 2 families and higher finished

Flora Iranica – all accepted taxa – finished Flora Armenia & Afghanistan – in progress

APG + recent systems from Phytotaxa 2011 – finished Lycopodiophyta & Ferns & gymnosperms – Phytotaxa 2011 – finishedSoreng et al 2015 – Gramineae – finishedFunk et al. 2007 – Compositae – in processAnnonaceae – showcase – familiy finished – infrafamilien Bearbeitungen work in progressEbenaceae, Myristicaceae – work in progress Amaranthaceae, Chenopodiaceae, Portulacaceae (et al.) – work in progress

http://jacq-dev.botanik.univie.ac.at/jacq-code/index.php?r=dataBrowser/classificationBrowser/index

GUI

GUI

Botucatu 2013-08-20

Digital imaging

Virtual Herbaria

Virtual Herbaria

JACQ Input – productive Systemhttps://input.jacq.org/herbarium/JACQ Output – publichttp://herbarium.univie.ac.at/database/search.php

JACQ Development – testing areahttp://jacq-dev.botanik.univie.ac.at/jacq-legacy/input/login.phptest_input / inputtest_editor / edit

JACQ Development Outputhttp://jacq-dev.botanik.univie.ac.at/jacq-legacy/output/search.php

URLs & Login

Botucatu 2013-08-20