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JMed Genet 1996;33:361-365 Direct detection of 4q35 rearrangements implicated in facioscapulohumeral muscular dystrophy (FSHD) G Deidda, S Cacurri, N Piazzo, L Felicetti Abstract The pl3E-l1 probe has been shown to de- tect DNA rearrangements in sporadic and familial cases of FSHD. Its use, however, has been hampered by the fact that it de- tects at least two pairs of EcoRI alleles, one derived from the 4q35 region (D4F104S1), the other from 1Oq26 (DlOF104S2). We have cloned pl3E-ll EcoRI fragments from the 4q35 and 1Oq26 subtelomeric re- gions and shown the presence of several restriction site differences within the KpnI tandem repeat units. The two loci present a different distribution of restriction sites for the enzyme BlnI which allows differ- ential cleavage of the KpnI units derived from lOq26, leaving intact the 4q35 pair of alleles. This method of differential restriction greatly facilitates the inter- pretation of Southern blots obtained from affected and unaffected subjects, with an important improvement in reliability for diagnosis and genetic counselling. In ad- dition, this method can be used to in- vestigate the molecular mechanism of the 4q35 rearrangement implicated in the disease and to ascertain whether the rearrangement is because of inter- chromosomal exchange between 4qter and lOqter KpnI repeats. (JMed Genet 1996;33:361-365) Key words: 4q35 rearrangements; facioscapulohumeral muscular dystrophy; BlnI restriction; DNA diagnosis. Istituto di Biologia Cellulare, CNR, Viale Marx 43, 00137 Rome, Italy G Deidda S Cacurri N Piazzo L Felicetti Correspondence to: Dr Felicetti. Received 26 October 1995 Revised version accepted for publication 8 December 1995 Facioscapulohumeral muscular dystrophy (FSHD) is an autosomal dominant neuro- muscular disorder which affects specific muscle groups and displays a variety of phenotypic expression. The gene for FSHD has been loc- alised, by linkage studies, to chromosome 4q35 distal to the linkage group D4S171-F11- D4S163-D4S139.12 Wijmenga et a13 first de- scribed a new probe, p13E-11 (D4F104S1), telomeric to D4S 139, which detects poly- morphic DNA fragments in normal subjects ranging from 30 kb to 300 kb, de novo DNA rearrangements less than 28 kb in sporadic FSHD patients, and similar "small" fragments in familial cases. Physical mapping studies have localised the pl3E-11 probe on 4q35, close to a highly polymorphic tandem repeat unit defined by 3-3 kb KpnI restriction fragments.3 The most likely mechanism involved in the development of disease is a DNA rearrange- ment within the 4q35 locus resulting in deletion of a discrete number of tandem repeat KpnI units, with the appearance of smaller EcoRI fragments 10 to 28 kb in size.4 The probe shows two polymorphic loci and a 9-5 kb Y specific fragment. By haplotype analysis one of the loci could be assigned to chromosome 4q355 whereas the other locus segregates with 1Oqter microsatellite markers.6 Unfortunately 4q35 and 1 Oqter p13E- 11 alleles segregating in the same FSHD family sometimes overlap with each other on conventional agarose gel electro- phoresis and make the interpretation of South- ern blots difficult. In order to analyse the structural differences between the two pairs of p1 3E-1 1 alleles, we cloned the non-4q35 13 kb fragment segregating in a FSHD Italian family and a similar sized 4q35 fragment from a spor- adic case of FSHD into a phage vector.7 Haplo- type analysis with microsatellite 1 Oqter markers and in situ hybridisation experiments with cloned KpnI repeats in different members of the Italian family have shown that the non- 4q35 fragment is located in the 1Oqter region, in agreement with the haplotype assignment by the Leiden group.6 Restriction mapping of the 1Oqter clone, when compared with the 4q35 fragment, indicates a similar arrangement of KpnI tandem repeat units and flanking se- quences. However, 4q35 and 1 Oq26 EcoRI clones can be distinguished by restriction anal- ysis with SfiI and Styl. We soon realised that this observation could be exploited for future applications in the field of molecular diagnosis and genetic counselling. We assumed that an accurate comparison of nucleotide sequences between 4q35 and non-4q35 EcoRI fragments would probably result in the identification of restriction enzymes able to cut specifically in either one of the alleles, facilitating the in- terpretation of the p1 3E-1 1 hybridisation pat- terns from the affected and unaffected members of FSHD families. Here we report that re- striction enzyme BlnI cleaves the variable KpnI region of the 1 Oqter p 13E- 11 fragments, al- lowing the direct identification of 4q35 alleles implicated in the disease. Materials and methods PATIENTS 4q35 haplotypes and pl3E-11 fragments se- gregating in affected and unaffected members of family FSH21 are described in detail else- where.8 Family FSH46 is a sporadic family in which the affected son carries a de novo rearrangement of 13 kb, absent in both healthy parents. 361 on June 17, 2021 by guest. 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  • JMed Genet 1996;33:361-365

    Direct detection of 4q35 rearrangementsimplicated in facioscapulohumeral musculardystrophy (FSHD)

    G Deidda, S Cacurri, N Piazzo, L Felicetti

    AbstractThe pl3E-l1 probe has been shown to de-tect DNA rearrangements in sporadic andfamilial cases of FSHD. Its use, however,has been hampered by the fact that it de-tects at least two pairs ofEcoRI alleles, onederived from the 4q35 region (D4F104S1),the other from 1Oq26 (DlOF104S2). Wehave cloned pl3E-ll EcoRI fragmentsfrom the 4q35 and 1Oq26 subtelomeric re-gions and shown the presence of severalrestriction site differences within the KpnItandem repeat units. The two loci presenta different distribution of restriction sitesfor the enzyme BlnI which allows differ-ential cleavage of the KpnI units derivedfrom lOq26, leaving intact the 4q35 pair ofalleles. This method of differentialrestriction greatly facilitates the inter-pretation of Southern blots obtained fromaffected and unaffected subjects, with animportant improvement in reliability fordiagnosis and genetic counselling. In ad-dition, this method can be used to in-vestigate the molecular mechanism ofthe 4q35 rearrangement implicated in thedisease and to ascertain whether therearrangement is because of inter-chromosomal exchange between 4qter andlOqter KpnI repeats.(JMed Genet 1996;33:361-365)

    Key words: 4q35 rearrangements; facioscapulohumeralmuscular dystrophy; BlnI restriction; DNA diagnosis.

    Istituto di BiologiaCellulare, CNR,Viale Marx 43,00137 Rome, ItalyG DeiddaS CacurriN PiazzoL Felicetti

    Correspondence to:Dr Felicetti.

    Received 26 October 1995Revised version accepted forpublication8 December 1995

    Facioscapulohumeral muscular dystrophy(FSHD) is an autosomal dominant neuro-muscular disorder which affects specific musclegroups and displays a variety of phenotypicexpression. The gene for FSHD has been loc-alised, by linkage studies, to chromosome 4q35distal to the linkage group D4S171-F11-D4S163-D4S139.12 Wijmenga et a13 first de-scribed a new probe, p13E-11 (D4F104S1),telomeric to D4S 139, which detects poly-morphic DNA fragments in normal subjectsranging from 30 kb to 300 kb, de novo DNArearrangements less than 28 kb in sporadicFSHD patients, and similar "small" fragmentsin familial cases. Physical mapping studies havelocalised the pl3E-11 probe on 4q35, closeto a highly polymorphic tandem repeat unitdefined by 3-3 kb KpnI restriction fragments.3The most likely mechanism involved in thedevelopment of disease is a DNA rearrange-ment within the 4q35 locus resulting in deletion

    of a discrete number of tandem repeat KpnIunits, with the appearance of smaller EcoRIfragments 10 to 28 kb in size.4 The probe showstwo polymorphic loci and a 9-5 kb Y specificfragment. By haplotype analysis one of theloci could be assigned to chromosome 4q355whereas the other locus segregates with 1Oqtermicrosatellite markers.6 Unfortunately 4q35and 1 Oqter p13E- 11 alleles segregating in thesame FSHD family sometimes overlap witheach other on conventional agarose gel electro-phoresis and make the interpretation of South-ern blots difficult. In order to analyse thestructural differences between the two pairs ofp1 3E-1 1 alleles, we cloned the non-4q35 13 kbfragment segregating in a FSHD Italian familyand a similar sized 4q35 fragment from a spor-adic case ofFSHD into a phage vector.7 Haplo-type analysis with microsatellite 1 Oqter markersand in situ hybridisation experiments withcloned KpnI repeats in different members ofthe Italian family have shown that the non-4q35 fragment is located in the 1Oqter region,in agreement with the haplotype assignment bythe Leiden group.6 Restriction mapping of the1Oqter clone, when compared with the 4q35fragment, indicates a similar arrangement ofKpnI tandem repeat units and flanking se-quences. However, 4q35 and 1 Oq26 EcoRIclones can be distinguished by restriction anal-ysis with SfiI and Styl. We soon realised thatthis observation could be exploited for futureapplications in the field of molecular diagnosisand genetic counselling. We assumed that anaccurate comparison of nucleotide sequencesbetween 4q35 and non-4q35 EcoRI fragmentswould probably result in the identification ofrestriction enzymes able to cut specifically ineither one of the alleles, facilitating the in-terpretation of the p1 3E-1 1 hybridisation pat-terns from the affected and unaffected membersof FSHD families. Here we report that re-striction enzyme BlnI cleaves the variable KpnIregion of the 1 Oqter p 13E- 11 fragments, al-lowing the direct identification of 4q35 allelesimplicated in the disease.

    Materials and methodsPATIENTS4q35 haplotypes and pl3E-11 fragments se-gregating in affected and unaffected membersof family FSH21 are described in detail else-where.8 Family FSH46 is a sporadic familyin which the affected son carries a de novorearrangement of 13 kb, absent in both healthyparents.

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  • Deidda, Cacurri, Piazzo, Felicetti

    D4Z4 1526 GAGGCCTtGGAAGAcGCtGCCT GCTGGAAGCAaCCCTCAGCGAGGAAGAATAC G4

    1111111 111111 11 1111 1111111111 IIIIIIIIIIIIIIIIIIII 1KPN21A 70 GAGGCCTcGGAAGAgGCcGCCTcGCTGGAAGCAcCCCTCAGCGAGGAAGAATACcG,

    D4Z4 1585 TGCTGGAGGAGCTTTAGGACGCGGGGTT GGACGGGGTCGGGTGGTTCGGGGCAGG4

    111111111111111111111111111111111111111111111111111111IKPN21A 131 TGCTGGAGGAGCTTTAGGACGCGGGGTTgGGACGGGGTCGGGTGGTTCGGGGCAGG,

    D4Z4 1645 GGCCTCTCTTTCGCGGGGAACaCCTGGCTGGCTACGGAG GTGTCTCCGCCCCGCCC

    KPN21 1 11A1921111111111111111GGAACgCCTGCTGGCTACGGAGnG GTCKPN21A 192 GGCCTCTCTTTCGCGGGGAACgCCTGGCTGGCTACGGAGnGTGTCTCCGCCCCGCCt

    D4Z4 1705

    KPN21A 253

    CACCGGGCTGACCGGCCTGGGATTCCTGCCTTCTAGgtccaGgCCGGTGAGAGACTC

    111111111111111111111111111111111111 1 1111111111111CACCGGGCTGACCGGCCTGGGATTCCTGCCTTCTAGcctagGcCCGGTGAGAGACTC

    BlnI

    D4Z4 1766 CcGCGGAGAACTGCCATTCTTTCCTGGGCATCCCGGGGATCCCAGAGCC GGCCCI

    1111111111111111IIII 11111111IIIli 111111111111111 11111KPN21A 314 CaGCGGAGAACTGCCATTCTTTCCTGGGCATCCCGGGGATCCCAGAGCCnnGGCCCI

    D4Z4 1825 CCAGCAGGTGGGCCGCCTACTGCGCACGCGCGGGTTTGCGGGCAGCCGCCTGGGCT(

    KPN21A 375 CCAGCAGGTGGGCCGCCTACTGCGCACGCGCGGGTTTGCGGGCAGCCGCCTGGGCT(

    Figure 1 Comparison of 300 nucleotide sequences derived from 4q35 and 10q26 Krepeat units. D4Z4: 4q35 tandem repeat sequence as derived from Hewitt et aP-KPN21A: 10q26 tandem repeat sequence cloned from a sporadic FSHD patient. T7BlnI (CCTAGG) and KpnI (GGTACC) sites are indicated.

    SOUTHERN BLOT ANALYSIS WITH 4q35 MARKERS

    Restriction of genomic DNA and hybridisationwith LiLA5 (D4S 163), pH30 (D4S 139), andpl3E-11 (D4F104S1) were as described in aprevious paper.2 Digestion with enzyme BlnI(Boehringer) was carried out by incubating10 jtg of genomic DNA with 20 U of enzymesat 37°C overnight. Digested samples were sep-arated by conventional agarose gel electro-phoresis at 2 V/cm for 48 hours.

    CLONING OF THE EcoRI pl3E-11 FRAGMENTSINTO X PHAGE

    Genomic DNA (200 jig) was completely di-gested with EcoRI (Biolabs) according to themanufacturer's instructions. The digested frag-ments were separated by size on a 10-40%sucrose gradient by centrifugation in a SW41Ti rotor at 22 000 rpm for 22 hours. Fragmentsof the appropriate size were selected after agar-ose gel electrophoresis of single gradient frac-tions, pooled, and cloned into k DashII/EcoRI(Stratagene). The ligation mixtures were pack-aged according to the Stratagene protocol andused to transform an Ecoli ER strain (p2392).The bacteriophage plaques were transferred tonitrocellulose filters (Schleicher & Schuell) andhybridised with 32p labelled p13E-11. AfterrescreeningDNA was prepared from the lysatesof positive phages following PEG precipitationand purification through CsCl density cent-rifugation at 38 000 rpm for 24 hours using aSW50.1 Ti rotor. The positive clones isolatedfrom the libraries constructed with the DNAof patients 21A and 46A are referred to ask21A and k46A.

    GGCTC PULSED FIELD GEL ELECTROPHORESISliii High molecular weight DNA was isolated from

    freshly collected blood, or from EBV trans-formed cells, and added to 0-5% Low Melt

    GCGGT agarose (Biorad) according to the procedure11111 described by Pharmacia LKB. Blocks wereGCGGT rinsed three times in sterile water and then

    equilibrated for 30 minutes at room tem-perature in the appropriate restriction enzyme

    CCCTC buffer. Digestions with BlnI (Boehringer) and11111 EcoRI (Biolabs) were carried out respectivelyCCCTC in 200,l with 60U and in 400,l with 150U

    of enzyme. The enzymes were added in threeCCACA equal portions at one hour intervals. After di-11111 gestion, the blocks were rinsed three timesCCACA in sterile water and then equilibrated for 30

    minutes at room temperature in the electro-phoresis buffer (0 5 x TBE).

    AGGTA Electrophoresis was performed at 12°C in a11111 Pulsaphor electrophoresis unit with an HEXAGGT electrode (Pharmacia LKB); the agarose gelKpnI (Biorad) was 1-2% in 0-5 x TBE. The runningGTGG procedure was carried out at 300 V, in three11111 steps: the first one was five hours with pulsesGTGGG of one second, the second three hours with

    pulses of 20 seconds, and the third two hourspnI with pulses of 45 seconds. After electro-he phoresis, gels were stained with ethidium

    bromide and photographed; DNA was thentransferred to Hybond N+ (Amersham) forhybridisation with oc-32ATP labelled p1 3E-1 1.

    ResultsSEQUENCE DIVERGENCE BETWEEN EcoRI 4q35AND 1oq26 CLONED FRAGMENTS IS OBSERVEDWITHIN THE KpnI TANDEM REPEAT UNITSWe have already shown by restriction mappingof 4q35 and 10q26 cloned fragments fromFSHD patients that restriction site differencesexist between the KpnI tandem repeat unitsderived from different chromosomes: an ad-ditional site for SfiI has been described withinthe 10q26 KpnI units.7 A more accurate se-quence comparison of the KpnI fragmentsshowed that 10q26 alleles displayed new re-striction sites for the enzymes Styl and BlnI(C/CTAGG) that were absent in 4q35 hom-ologues. In fig 1 a 300 nucleotide sequencederived from 4q35 D4Z4 units9 is comparedwith the corresponding tract derived from sub-cloned 10q26 KpnI units to show a 1Oqterspecific BlnI site occurring about 80 nucleotidesupstream of the KpnI site.

    This observation prompted us to constructa detailed restriction map for BlnI using thephage clones derived from the two loci, withthe aim of finding a restriction enzyme thatcould specifically cleave either one of the p 1 3E-11 alleles on genomic DNA. StyI cannot beused for this purpose since it cuts within theKpnI units of both alleles.

    BlnI RESTRICTION MAPS OF PHAGE CLONED EcoRIFRAGMENTS DERIVED FROM 10q26 AND 4q35REGIONSRestriction maps were constructed after partialdigestion with BlnI of cloned fragments. Asreported before7 clone 46A contains a 13 kb

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  • Direct detection of 4q35 rearrangements implicated in facioscapulohumeral muscular dystrophy

    Chromosomie 4

    46A

    Chrornosomiie 10

    E K

    T7 -EN

    BI K

    pl3E-1 1

    E K BI B/K

    21A T3 _ 1

    B/K E

    Ii T7

    1 kh

    Figure 2 BlnI restriction maps of 4q35 and 1Oq26 phage clones derived from FSHD patients. Restriction sites: E,EcoRI; K, KpnI; Bl, BlnL Each dotted bar represents the 3-3 kb repeat unit and the hatched box shows the position ofprobe pl3E-11. Partial digests of A clone DNA were hybridised with j,-ATI?2 T7 and T3 oligomers.

    EcoRI fragment derivrearrangement in aClone 21A contains ament, unrelated togregates in patient1 Oqter microsatellitemapped by in situ hyshown in fig 2, bothcontain a common Jstream of the KpnI siHowever, the 10q26 (BlnI site about 80 nuKpnI site of each riwere obtained with Bicosmid clone, whichrepeat units of the 1Cthe additional BlnI sieach 1Oq26 repeat iassume that after douDNA with the enzyxp13E-11 alleles derishortened by 3 kb (thEcoRI site and the f

    A

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    14C1o55

    45

    42

    2313

    A

    Figure 3 P'ulse field gel electrophoresis of 4q35 and 1Oq2dfamily FSH21 members after EcoRI and BlnI restriction..FSH subjects, D, E, and F to unaffected members offami,4q35 and 10q26 alleles are shown and are clearly separate,4q35 alleles that are not cleaved by BlnI are left in the gel.4q35 rearranged allele segregating with the disease and is tThe differences in the migration of the 23 kb fragments (ncagarose gel electrophoresis) are probably the result of differe;DNA in the agarose plugs. The 13 kb fragment is a smallBlnI restriction.

    red from a 4q35 de novosporadic FSHD patient.i similar sized EcoRI frag-the disease, which se-21A in association withmarkers and has been

    ,bridisation to 10q26.7 As4nli nnri 1lOn? ricrnnq

    10q26 alleles will be cleaved into BlnI frag-ments that will not show any hybridisationsignal with p1 3E-1 1, except for a small pieceof 2-8 kb spanning the distance between thefirst two BlnI sites.

    -Xq__ aliu 1V5V %-sVIb PULSED FIELD GEL ELECTROPHORESIS OF 4q35BlnI site about 3 kb up- AND 10q26 P13E-11 ALLELES AND EFFECT OF BlnIite in the first repeat unit. DIGESTION ON THE HYBRIDISATION PATTERNclone shows an additional Fig 3 (panel A) shows a clear pattern of sep-Lcleotides upstream of the aration ofthe larger alleles byPFGE after EcoRIepeat. The same results digestion of high molecular weight genomiclnI restriction of the 43 kb DNA derived from lymphoblastoid cell linescontains at least 10 KpnI of affected and unaffected members of family)q26 type, indicating that FSH21 (fig 4). PFGE separation allows thete is a constant feature of identification of at least three types of largerunit. Therefore, we can alleles, in the range of 140 kb, 85 kb, and 45 kb,ible digestion of genomic but some bands appear to be doublets andmes EcoRI and BlnI, the one cannot assign these alleles with sufficientived from 4q35 will be precision to either one of the chromosomes.e distance between the 5 Digestion with BlnI (fig 3, panel B) drasticallyirst BlnI site), while the changes the p1 3E- 1 1 hybridisation pattern and

    indicates unequivocally the 4q35 origin of themultiple alleles, since the 10q26 fragments arecleaved. Fig 4 shows the pedigree of family

    ifrl FSH2 18 and the segregation of large and smallB C D) E G pl3E-11 alleles in association with 4q35 and

    1 0q26 markers. It appears that the 4q35rearrangement giving origin to the 23 kb frag-ment associated with the disease has occurredon the grandmaternal chromosome char-acterised by the 4q haplotype 85-11.5-8.2 (thinlined box) and is the result of a deletion of

    140 about 62 kb, corresponding to nearly 20 KpnIrepeat units. The rearranged chromosome

    15\3 4q35 has been transmitted to the affected23 daughter and her sibs, while the unaffected

    sister has inherited the chromosome char-acterised by the haplotype 140-8.8-7.2. At the

    B same time the affected daughter has inheritedthe 1Oqter chromosome characterised by the

    5 pl3E-11 alleles derivedfrom haplotype 13-2-3 (thick lined box) carryingA, B, and C refer to affected the small 13 kb fragment, while the unaffectedd by size. In panel B only the sister has inherited from the mother the 1 OqterThe 23 kb fragment is the chromosome characterised by the haplotypes

    vreserved after BlnI digestion. 85-1-3 carrying the large allele. In conclusion,)t observed by conventional BlnI digestion of genomic DNA converts thent concentrations of sample0q26 alleke and is cleaved by p1 3E-1 1 pattern from two loci (four alleles) to

    one locus (two alleles) and clearly identifies the

    K K E

    l T3

    B/K

    EcoRl

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  • Deidda, Cacumi, Piazzo, Felicetti

    Kb

    26 --23 -20 -17 -

    Chromosome 4 Chromosome 10markers markers

    D4F1O4S1 D1OF104S2D4S139 D10S212D4S163 D10S590

    1.2E

    X 140 85 13115 8.8 1 22 7.2 3 3

    11.1 11.2G A

    45 140 42 85 45 23 42 1317.5 8.8 3 1 175 115 3 25.7 7.2 2 3 5.7 8 2 3

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    EFFECT OF EcoRI-BlnI DIGESTION ON THE pl3E-11HYBRIDISATION PATTERN IN BOTH SPORADICAND FAMILIAL CASES OF FSHDTwenty three affected subjects from 19 familialand four sporadic FSHD pedigrees were chosenon the basis of the presence of a small 4q35fragment ranging in size between 13 kb and25 kb. Genomic DNA was digested with eitherEcoRI alone or EcoRI-BlnI and electrophoresedfor 48 hours in adjacent lanes to compare thesize change with the best accuracy. In mostcases the results ofp 13E-1 1 hybridisation showa better definition of bands after double di-gestion, with disappearance of 1 Oq26 inter-fering alleles (fig 5). The blurred pattern at thetop of the gel resulting from superimpositionof larger multiple alleles disappears, while thesmall rearranged band running ahead in thegel is better defined than that observed afterEcoRI digestion. As shown in fig 5A rearranged4q35 alleles of 17, 23, and 26 kb becomeshorter, producing fragments of 14, 20, and23 kb respectively. The reduction in size iscompatible with the 3 kb predicted by re-striction analysis of phage clones, but thischange cannot be determined with accuracy inthe upper portion of the gel. In panel B, doubleEcoRI-BlnI digestion of genomic DNA froman affected subject results in the cleavage ofthe 27 kb 1 Oqter allele, while the 4q35 largeallele is preserved and the small 17 kb allele ischanged into a 14 kb allele. In panel C, thep 13E-1 1 pattern of a normal female displays amixture of large and small alleles that cannotbe interpreted after EcoRI digestion. EcoRI-BlnI digestion results in the disappearance ofthe two 10q26 alleles, 27 kb and 9 5 kb, leavingthe large 4q35 alleles at the top of the gel. Theexperiment shows that 1 Oqter alleles can be asshort as the Y specific 9-5 kb fragment. Inpanel D, a fragment of 23 kb is carried by the

    LT LN ND

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    A B D

    Figure 5 Effect of double digestion with EcoRI and BlnI on the sizes ofpl3E-11 alleles as determined by conventional agarose gel electrophoresis. Eachpanel refers to multiple alleles observed in subjects from different FSH families (see Results section for details).

    Family FSH21

    1-1D

    45 140 42 8517.5 12.5 3 25.7 7.8 2 3

    [3 85 85 42 85 42 ?11-59-5 2 3 9.5 3 28-211-5 2 2 82 11-5 2 3

    Figure 4 Segregation of 4q35 and 10q26 markers in family FSH21. The two lociidentified by pl3E-11 are named D4F104S1 (chromosome 4) and D1OF104S2(chromosome 10). The thin lined boxes indicate the 4q35 haplotype associated with thedisease, the thick lined box indicates the 10q26 haplotype segregating with the 13 kbfragment. The sizes ofpl 3E-11 alleles were determined by pulse field gel electrophoresis asshown in fig 3. The 23 kb pl3E-11 fragment originates from a 62 kb deletion occurringon the 85 kb grandmaternal allele.

    62 kb deletion occurring on one of the two4q35 alleles of subject A as the chromosomalcause of disease development.

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  • Direct detection of 4q35 rearrangements implicated in facioscapulohumeral muscular dystrophy

    unaffected mother (C) of the proband (A) andshows the same electrophoretic mobility of therearranged 4q35 fragment transmitted from theaffected father (B). The affected subject (A)appears to be homozygous for the fragment(see the double intensity of the signal) and thiswould prevent any prediction based on p1 3E-11 hybridisation pattern in the case of fetalDNA analysis. EcoRI-BlnI digestion cleaves the23 kb allele derived from 1Oqter and only the23 kb 4q35 fragments related to disease arepreserved, allowing an unequivocal inter-pretation in the case of prenatal diagnosis.In conclusion, the conversion of p1 3E- 1 1 hy-bridisation pattern to a single pair of 4q35alleles implies a marked improvement in theinterpretation of the results, advantageous fordiagnostic and genetic counselling accuracy.

    DiscussionThe use of p1 3E-1 1 for the diagnosis ofFSHDfound its specific application in the case ofsporadic FSHD patients. The appearance of asmall p1 3E-1 1 fragment in the proband, in theabsence of any rearrangement in the unaffectedparents, provided convincing evidence for astrict correlation between 4q35 rearrangementsand the development of disease. In the familialcases, the results are not always reliable owingto the segregation within the same family ofsmall fragments of different chromosomal ori-gin (lOqter mainly) in at least 10% ofthe worldpopulation. After cloning, restriction mapping,and partial sequencing of KpnI repeat unitsderived from the 1 Oqter region, a major diag-nostic breakthrough was achieved by differ-ential BlnI restriction ofgenomic DNA derivedfrom affected subjects: the p1 3E-1 1 hy-bridisation pattern is changed from two loci(four alleles) to one locus (two alleles) with theremoval of 1 Oqter alleles interfering with the4q35 disease related fragments. After doubledigestion with EcoRI and BlnI one can assumethat the alleles migrating in the gel are ex-clusively 4q35 specific and the small alleleundergoing a constant reduction in size (3 kb)is the rearranged fragment correlated with thedisease.

    Differential BlnI restriction can also be ap-plied to investigate the molecular mechanismof the 4q35 rearrangements. Since we did notfind, in any of the subjects examined, a sizereduction larger than 3 kb, we can excludethat the DNA rearrangements are the result ofcryptic translocations of 1Oqter sequences onthe tip of chromosome 4. If this were thecase, the size reduction would be increasedproportionately to the number of 1 Oqter KpnI

    units present in the hybrid rearrangement. Itappears that the most likely mechanism is a4q35 intralocus recombination between ho-mologous KpnI repeat units. As far as geneticcounselling is concerned, the presence of asmall 4q35 BlnI fragment will definitely provethat a deletion has occurred in a critical portionof the FSHD locus and the subjects carryingthis fragment have a 95% risk of manifestingthe disease in the first two decades of their life,taking into account the non-penetrance of thegene in 5% of people. Linkage analysis withother 4q35 probes such as D4S 163 andD4S139 will still be required to exclude therare cases of FSHD unlinked to 4q35,210 toascertain paternity, and to study the segregationof 4q35 haplotypes in the rare families whereno small rearranged fragments are present.

    It is worth noting that EcoRI-BlnI digestionwill be particularly useful in genetic studies ofsmall sized FSHD families where it is notpossible to establish a significant linkage be-tween small 4q35 fragments and the disease.An extended application of BlnI restriction

    analysis in a larger number of FSHD familiesand normal subjects will confirm the assoc-iation between short 4q35 fragments and thedisease and the essential role of telomeric po-sitional effect in the pathogenesis ofthe disease.We wish to thank Dr I La Cesa and Professor C Scoppetta forclinical and diagnostic evaluation of the FSH2 1 family membersand Dr R R Frants and Dr C Wijmenga for the gift of p1 3E-11 probe. This work was financially supported by grant 356from Telethon-Italy and by Progetto Finalizzato IngegneriaGenetica, sottoprogetto 5.

    1 Sarfarazi M, Wijmenga C, Upadhyaya M, et al. Regionalmapping offacioscapulohumeral muscular dystrophy geneon 4q35: combined analysis of an international con-sortium. Am Jf Hum Genet 1992;51:396-403.

    2 Cacurri S, Deidda G, Piazzo N, et al. Chromosome 4q35haplotypes and DNA rearrangements segregating in affec-ted subjects of 19 Italian families with facioscapulohumeralmuscular dystrophy (FSHD). Hum Genet 1994;94:367-74.

    3 Wijmenga C, Hewitt JE, Sandkuijl LA, et al. Chromosome4q DNA rearrangements associated with facioscapulo-humeral muscular dystrophy. Nature Genet 1992;2:26-30.

    4 Van Deutekom JCT, Wijmenga C, van Tienhoven EAE, etal. FSHD associated DNA rearrangements are due todeletions of integral copies of a 3-3 kb tandemly repeatedunit. Hum Mol Genet 1993;2:2037-42.

    5 Wijmenga C, van Deutekom JCT, Hewitt JE, et al. Pulsefield gel electrophoresis of the D4F1O4S1 locus revealsthe size and the paternal origin of the FSHD-associateddeletions. Genomics 1994;19:21-6.

    6 Wijmenga C, Bakker B, Hofker MH, et al. The FSHD locus(pl3E-11) on 4qter shows high homology with 1Oqter.Muscle Nerve 1994;suppl 1:S 177.

    7 Deidda G, Cacurri S, Grisanti P, Vigneti E, Piazzo N,Felicetti L. Physical mapping evidence for a duplicatedregion on chromosome 1Oqter showing high homologywith the FSHD locus on chromosome 4qter. Eur J HumGenet 1995;3:155-67.

    8 Deidda G, Cacurri S, La Cesa I, Scoppetta C, FelicettiL. 4q35 molecular probes for the diagnosis and geneticcounseling of facioscapulohumeral muscular dystrophy.Ann Neurol 1994;36:117-18.

    9 Hewitt JE, Lyle R, Clark LN, et al. Analysis of the tandemrepeat locus D4Z4 associated with facioscapulohumeralmuscular dystrophy. Hum Mol Genet 1994;3:1287-95.

    10 Gilbert JR, Stajich JM, Wall S, et al. Evidence for hetero-geneity in facioscapulohumeral muscular dystrophy(FSHD). Am JHum Genet 1993;53:401-8.

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