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Leibniz Institute of Plant Genetics
and
Crop Plant Research (IPK)ECPGR
Working Group on Forages
Poel, 29.4.2010
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)
Gatersleben
Leibniz Society (http://www.wgl.de)
Gottfried Wilhelm Leibniz 1646-1716 "theoria cum praxi"
86 non-university research institutes and service facilities
Research activities of Leibniz Institutes range from pure
fundamental research to the investigation of highly applied issues
Institutes are assessed at regular intervals by external experts
5 Sections- Humanities and Education
- Economics, Social Sciences,
Regional Infrastructure
- Life Sciences
- Mathematics, Natural Science, Engineering
- Environmental Sciences
Budget: 860 Million €
Grants: 244 Million €
Staff: 13.930
Scientists: 6.347
PhD Students: 1.6048.5.2009
Genome DiversityProf Andreas Graner
Dr Nils Stein
Resources
Genetics and
ReproductionDr Andreas Börner
1) Management
Governing BoardChair:
MinDirig Dr Joachim Welz
Vice Chair:
RD Peter Hassenbach
Managing OfficeRoland Schnee
Characterisation and
DocumentationProf Andreas Graner
Management and
EvaluationDr Andreas Börner
Taxonomy and
EvolutionDr Frank Blattner
Dept. of Genebank
Head: Prof Andreas Graner
Dept. of Administration
and Central ServicesHead: Bernd Eise
Dept. of Cytogenetics and
Genome AnalysisHead: Prof Ingo Schubert
Dept. of Molecular
Genetics
Head: Prof Thomas Altmann
Dept. of Physiology and
Cell Biology
Head: Prof Nicolaus von Wirén
Karyotype EvolutionProf Ingo Schubert
Seed DevelopmentDr Winfriede Weschke
Plant Genome Resources Centre (PGRC) Coordinator: Dr Patrick Schweizer
Bioinformatics Coordinator: Prof Falk Schreiber
Genebank
DocumentationDr Helmut Knüpffer
Satellite
Collections
North Dr Klaus Dehmer
In vitro Storage and
CryopreservationDr Joachim Keller
Taxonomy of Plant
Genetic ResourcesDr Frank Blattner
(prov.)
Experimental
TaxonomyDr Frank Blattner
Groups
Transcriptome AnalysisDr Patrick Schweizer
Chromosome Structure
and FunctionDr Andreas Houben
Apomixis Dr Timothy F. Sharbel
EpigeneticsDr Michael F Mette
In vitro DifferentiationProf Anna M Wobus
Gene and Genome
MappingDr Marion Röder
Bioinformatics and
Information TechnologyDr Uwe Scholz
Programmes
CytogeneticsProf Ingo Schubert
Plant BioinformaticsProf Falk Schreiber
Gene RegulationDr Helmut Bäumlein
PhytoantibodiesDr Udo Conrad
Plant Reproductive BiologyDr Jochen Kumlehn
Applied BiochemistryDr Hans-Peter Mock
Structural Cell BiologyDr Michael Melzer
Yeast GeneticsProf Gotthard Kunze
PersonnelJuliane Becker
FinancesMartina Liewald
Technology Transfer and
Legal MattersDr. Tankred Schuhmann
Buildings and EquipmentHerwig Bierstedt
Materials, Management and
General ServicesUrsula Deppner
Experimental Fields and
NurseriesPeter Schreiber
Genome AnalysisDr Patrick Schweizer
Genome PlasticityDr Renate Schmidt
Board of DirectorsProf Andreas Graner 1)
Managing Director
Sybille-Andrea Lorenz 1)
Administrative Director
Prof Ingo Schubert
Prof Thomas Altmann
Prof Nicolaus von Wirèn
Scientific Advisory BoardChair:
Prof Christian Jung
Personnel CouncilChair: Thomas Kruse
Genebank Advisory BoardChair:
Dr Christiane Gebhardt
Molecular Plant NutritionProf Nicolaus von Wirén
Data Inspection(Junior Research Group)
Dr Marc Strickert
Hybrid Wheat(BMBF-funded Research
Group)
Dr Mario Gils
Plant Architecture(BMBF-funded
Research Group)
Dr Thorsten SchnurbuschExpression MappingDr Lothar Altschmied
HeterosisProf Thomas Altmann
Systems Biology(BMBF-funded Research Group)
Dr Björn H. Junker
Scientists
131
PhD Students
58
Technical and
administrative employees
285
Genome DiversityProf Andreas Graner
Dr Nils Stein
Resources
Genetics and
ReproductionDr Andreas Börner
1) Management
Governing BoardChair:
MinDirig Dr Joachim Welz
Vice Chair:
RD Peter Hassenbach
Managing OfficeRoland Schnee
Characterisation and
DocumentationProf Andreas Graner
Management and
EvaluationDr Andreas Börner
Taxonomy and
EvolutionDr Frank Blattner
Dept. of Genebank
Head: Prof Andreas Graner
Dept. of Administration
and Central ServicesHead: Bernd Eise
Dept. of Cytogenetics and
Genome AnalysisHead: Prof Ingo Schubert
Dept. of Molecular
Genetics
Head: Prof Thomas Altmann
Dept. of Physiology and
Cell Biology
Head: Prof Nicolaus von Wirén
Karyotype EvolutionProf Ingo Schubert
Seed DevelopmentDr Winfriede Weschke
Plant Genome Resources Centre (PGRC) Coordinator: Dr Patrick Schweizer
Bioinformatics Coordinator: Prof Falk Schreiber
Genebank
DocumentationDr Helmut Knüpffer
Satellite
Collections
North Dr Klaus Dehmer
In vitro Storage and
CryopreservationDr Joachim Keller
Taxonomy of Plant
Genetic ResourcesDr Frank Blattner
(prov.)
Experimental
TaxonomyDr Frank Blattner
Groups
Transcriptome AnalysisDr Patrick Schweizer
Chromosome Structure
and FunctionDr Andreas Houben
Apomixis Dr Timothy F. Sharbel
EpigeneticsDr Michael F Mette
In vitro DifferentiationProf Anna M Wobus
Gene and Genome
MappingDr Marion Röder
Bioinformatics and
Information TechnologyDr Uwe Scholz
Programmes
CytogeneticsProf Ingo Schubert
Plant BioinformaticsProf Falk Schreiber
Gene RegulationDr Helmut Bäumlein
PhytoantibodiesDr Udo Conrad
Plant Reproductive BiologyDr Jochen Kumlehn
Applied BiochemistryDr Hans-Peter Mock
Structural Cell BiologyDr Michael Melzer
Yeast GeneticsProf Gotthard Kunze
PersonnelJuliane Becker
FinancesMartina Liewald
Technology Transfer and
Legal MattersDr. Tankred Schuhmann
Buildings and EquipmentHerwig Bierstedt
Materials, Management and
General ServicesUrsula Deppner
Experimental Fields and
NurseriesPeter Schreiber
Genome AnalysisDr Patrick Schweizer
Genome PlasticityDr Renate Schmidt
Board of DirectorsProf Andreas Graner 1)
Managing Director
Sybille-Andrea Lorenz 1)
Administrative Director
Prof Ingo Schubert
Prof Thomas Altmann
Prof Nicolaus von Wirèn
Scientific Advisory BoardChair:
Prof Christian Jung
Personnel CouncilChair: Thomas Kruse
Genebank Advisory BoardChair:
Dr Christiane Gebhardt
Molecular Plant NutritionProf Nicolaus von Wirén
Data Inspection(Junior Research Group)
Dr Svetlana Friedel
Hybrid Wheat(BMBF-funded )
Dr Mario Gils
Plant Architecture(BMBF-funded
Research Group)
Dr Thorsten SchnurbuschExpression MappingDr Lothar Altschmied
HeterosisProf Thomas Altmann
Systems Biology(BMBF-funded Research Group)
Dr Björn H. Junker
Research Mission
IPK is a research centre that deals with questions of
modern biology, mainly by studying cultivated plant
species.
Its research aims at the generation of novel knowledge, the
discovery of basic principles of plant performance and the
development of enabling technologies.
These are considered to be of paramount importance for
the targeted utilization of biological diversity for the
sustainable production of food, feed and renewable
resources.
1961/63 2005/2007 2050
Population growth and agricultural
production
Data from Bruinsma, 2009
FAO Expert Meeting,
Rome
0
1000
2000
3000
4000
5000
6000
7000
8000
9000
10000
World population
(mil
l. p
eo
ple
)
38%
Cereals production
(mil
l. t
on
s)
0
1000
2000
3000
49%
Meat production
(mil
l. t
on
s)
0
100
200
300
400
500
600
700
800
900
1000
85%
Arable land per caput (ha)
Bruinsma, 2009
FAO Expert Meeting, Rome
Competing demands
- Population increase
- Urbanization
- Industrial use
- Biofuel production
- Land conservation
- Climate change
Interdisciplinary Approaches by
Integration of
Cell Biology
Biochemistry
Physiology
Molecular Genetics
Cytogenetics
Taxonomy
Bioinformatics
Wx
ABG704 ABG312Ris17aGBR399GBM1126MWG2018GBR0961GBS0018MWG042b GBR297MWG555aGBR282G-alphaGBR605GBR507 GBS028Bmag021GBR161GBM1060GBR0923GBR046GBR104GBR470GBR464GBS0035MWG089GBR226
GBR538 GBR019
GBR152GBS0154MWG2291ABG380GBR219GBR405GBM1116GBS0356MWG836GBR602GBR036GBM1033
GBR074GBR637GBS0198GBR013MWG2072GBR211GBS0365GBR202GBS0268GBS0413GBR395
GBR222GBM1030GBR0597 GBR088GBM1115GBR0943Bmac273 MWG2031
Ris15GBR159bGBS0378ABG476GBS0360 GBR1143MWG626GBS0340
GBR100GBS0317GBR683 GBR0837GBR1043aGBS0250GBR0632GBR595GBR283GBS0132GBM1058GBR256GBS0405 GBR102GBM1164GBS0040GBM1359GBR603MWG825GBM1006GBR323bGBR633GBR086dABC310bGBR313
GBM1102GBR388GBR429GBR539Ris44GBR159aGBR192GBR646bABC253ABG461aWG380aGBR251GBR646cGBR1018GBR660GBS0084GBR0874GBM1017GBS0291GBM1065
GBR1086GBR353aGBR0905
MWG2062
0,04,55,25,46,06,17,98,0
8,29,710,110,912,212,313,014,215,218,721,5
22,022,826,528,129,430,330,431,331,431,732,833,8
42,242,745,652,554,659,660,861,664,265,168,068,668,868,969,970,370,570,871,273,274,074,374,574,875,075,277,677,978,578,678,879,479,680,280,8
81,483,183,383,984,385,285,488,990,691,892,694,3
97,998,099,9
101,0101,3102,6103,6104,3104,7106,5111,2
113,1115,5120,2123,3126,0
126,5127,9128,0128,8131,8133,7134,0
135,6137,8142,5143,4144,9145,1146,8
Dor4b
Arabidopsis
thaliana
Model Plants
Tabacco
Nicotiana sp.
St. John´s WortHypericum perforatum
Rock CressBoechera holboellii
Crop Plants
Barley
Wheat
Legumes
Maize
Rapeseed
Potato
Forage Grasses
Research Areas
Conservation and
Utilization of Crop Plant
Diversity
Dynamics of Plant
GenomesIntegrative Biology
of Plant Performance
Improvement of seed, in
vitro and cryo conservation.
Genomics approaches to
understand and valorize
genetic diversity.
Understanding genome
diversity on a structural
and functional level.
Use of high throuput technologies
to study plant performance at a
cellular and organismic level.
• Completion of the collection
• Optimization of conservation procedures/seed longevity
• Development of genebank related information systems
Optimization of the conservation management
Conservation and Utilization of Crop
Plant Diversity
• Taxonomic research
• Adaptation, speciation and domestication
Taxonomy and evolutionary biology
• Development of resources (populations, markers, maps)
• Evaluation/phenotyping
• Trait mapping, gene isolation
• Analysis of allelic diversity (allele mining)
Development of strategies for an improved
utilization of genetic resources
22.05LOD
3.0
MWG851B
MWG851C
ABG314B
ABG463
CDO484
ABG390
ABG391
ABC482
ABC155
ABG495A
MWG877
WG908
iEst9
CDO504
MWG514B
WG364
mSrh
CDO57B
ABC302
ABC324
WG889
WG530
WG541
ksuA3A
Ubi2
CDO749
ABG395
ABG708
ABG705
ABG316B
MWG920-1A
ABC483
MWG502
Mad2
0.022.05LOD
3.0
MWG851B
MWG851C
ABG314B
ABG463
CDO484
ABG390
ABG391
ABC482
ABC155
ABG495A
MWG877
WG908
iEst9
CDO504
MWG514B
WG364
mSrh
CDO57B
ABC302
ABC324
WG889
WG530
WG541
ksuA3A
Ubi2
CDO749
ABG395
ABG708
ABG705
ABG316B
MWG920-1A
ABC483
MWG502
Mad2
0.0
• Seed development and -physiology in cereals, legumes and
Brassicaceae
• Formation and evolution of plant centromeres
• Evolutionary and molecular analysis of sexual und apomictic
reproduction
• Genetic principles and molecular mechanisms of heterosis
• Genetics of non-host resistance in cereals to fungal pathogens
• Effect of plant nutrition on phytohormones and morphologic
differentiation
• Physical mapping and whole genome sequencing in barley
Flagship projects
MetabolomicsMetabolites
GenomicsDNA
ProteomicsProteins
TranscriptomicsRNA
Infrastructure
0
10
20
30
40
50
60
70
80
90
104
100 113 125 138 150 163 175 188 200 213 225 238 250 263 275 288 300 313 325 338 350 363 375 388 400
Glc-6-P AV: 19.04-19.07 min (3) SB: 4.73-5.14 (25) NL: 2.53E4 T: {0,0} - c ESI corona sid=50.00 det=1435.00 Full ms [ 100.00-400.00]
173.0
212.1
112.9
233.0
155.0
215.1191.1
145.0218.2
259.1251.2
181.0 343.3
161.1
380.1266.5
205.2352.5132.9
169.2 230.3 374.3300.3277.8 309.0 328.6 388.5290.1119.9 248.2 334.8273.5 326.0 366.7
%
amu
PLANT BIO-
INFORMATICS
Falk Schreiber
DATA INSPECTION
Svetlana Fiedler
SYSTEMS
BIOLOGY
Björn H. Junker
GENEBANK
DOCUMENTATION
Helmut Knüpffer
BIOINFOR-
MATICS &
INFORMATION
TECHNOLOGY
Uwe Scholz
Bioinformatics@IPKCoordinator: Falk Schreiber
Analysis of natural diversity Transgenic approaches
wild typeA1A2
22.05LOD
3.0MWG851B
MWG851C
ABG314B
ABG463
CDO484
ABG390
ABG391
ABC482
ABC155
ABG495A
MWG877
WG908
iEst9
CDO504
MWG514B
WG364
mSrh
CDO57B
ABC302
ABC324
WG889
WG530
WG541
ksuA3A
Ubi2
CDO749
ABG395
ABG708
ABG705
ABG316B
MWG920-1A
ABC483
MWG502
Mad2
0.022.05LOD
3.0MWG851B
MWG851C
ABG314B
ABG463
CDO484
ABG390
ABG391
ABC482
ABC155
ABG495A
MWG877
WG908
iEst9
CDO504
MWG514B
WG364
mSrh
CDO57B
ABC302
ABC324
WG889
WG530
WG541
ksuA3A
Ubi2
CDO749
ABG395
ABG708
ABG705
ABG316B
MWG920-1A
ABC483
MWG502
Mad2
0.0
- Collection, conservation and documentation of
plant genetic resources
- Research on cultivated plants and their wild
relatives and related species
- Distribution of plant material for research, breeding
and education
Mission
The Federal ex-situ Genebank
National Strategy for Agrobiodiversity
- secure and enlarge infrastructure for PGR conservation
- develop approaches and strategies for utilization of PGR
- enhancement of international collaboration
Integration at the EU level
- ECPGR
- AEGIS
- Framework 6,7
The Federal ex-situ Genebank
Total Collection
146.966 Accessions
2.649 Species
779 Genera
Reference Collections
391.000 Herbarium sheets
90.000 Seeds & Fruits
49.000 Spike-Samples
Cereals & Grasses 64.104
Legumes 28.250
Vegetables 18.538
Oil-/ Fiber plants 9.737
Medicinal-/ Spice plants 5.951
Mutants 2.684
Forage plants 12.406
Potatoes 5.874
Total 146.966
Collections Accessions
22.350
Safety Duplicates
Ex-situ Conservation
• Cold room storagee.g. cereals, legumes
• Field conservatione.g. fruit trees, Allium
• In-vitro culturee.g. potatoes, Allium
• Cryo conservatione.g. potato
2008/9: 22.799 Samples
Durchschnittliche Bearbeitungsdauer 2008/2009: 8,5 Tage ab Eingang SMTA
Forschungs-
Einrichtungen
(276)
10.092
Genbanken
(6) 48
Botanische Gärten
(10) 232
Züchter
(80)
3.637
IPK
(48)
805
NGOs
(49)
2.500
Privatpersonen
(270) 3.114
Behörden
(12)
1.042
Sonstige
(30)
1.329
Forschungs-
Einrichtungen
(276)
10.092
Genbanken
(6) 48
Botanische Gärten
(10) 232
Züchter
(80)
3.637
IPK
(48)
805
NGOs
(49)
2.500
Privatpersonen
(270) 3.114
Behörden
(12)
1.042
Sonstige
(30)
1.329
Distribution of Seeds and Plant Material
Certified Quality Management
documentation, transparency, know how
- Primary cultivation
- Characterization
- Reference vouchers
- Harvest/drying
- Germination test
- Storage
- Distribution
- Multiplication
- Research
- Human Resources