lipidomic analysis by using one- and multidimensional ... · francesco cacciola1, luigi...
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Francesco Cacciola1, Luigi Mondello1,2,3
1University of Messina, Italy2Chromaleont s.r.l., c/o University of Messina, Italy
3University Campus Bio-Medico of Rome, Italy
Lipidomic analysis by using one- and
multidimensional chromatography coupled to mass
spectrometry
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Lipidomics
Lipidomics is a branch of metabolomics and aims to study all the lipids within a
living system or in complex biological samples
Lipid profiles can be related to very common illnesses such as cancer, diabetes,
and cardiovascular disease
BIOLOGICAL SAMPLES
ADVANCED ANALYTICAL TOOLS
HUMAN HEALTH STATUS
LC(xLC)-MS
LC-(x)-GC)-MS
GC(xGC)-MS
DATABASE
Informative featuresDisease
markers
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Structural components of cellular membranes (phosphoglycerides, sphingolipids
and steroids)
Cell signaling (e.g. phospholipase C and phospholipase A2 in modulating
immunological responses)
Endocrine actions (e.g. steroid hormones)
Biological function of lipids
Energy storage (triacylglycerols in adipocytes)
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More widespread approaches:
Shotgun
LC/GC-MS
Lipidomics approaches
Advantages:
- Fast
Disadvantages:
- Ion suppression
- Need of MS/MS and/or HRMS
Advantages:
- Pre-separation of lipidic species and/or
classes, which support MS identification
- Reduced ion-suppression effect
Disadvantages:
- Need of chromatographic optimization
0,0 1,0 2,0 3,0 4,0 5,0 6,0 7,0 8,0 9,0 10,0 11,0 12,0 13,0 14,0 15,0 16,0 min
0,00
0,25
0,50
0,75
1,00
1,25
1,50
(x100,000,000)
1:TIC(+)
400 500 600 700 800 900 1000 1100 1200 m/z
0
2500000
5000000
7500000
10000000
Inten.
857
601
575
368523 831 941
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Lipidomics approaches
FOLCH EXTRACTION
(CHCl3 / MeOH 2:1)
LC-MS analysis
BIOLOGICAL SAMPLES
COLD SAPONIFICATION
(KOH/EtOH 2N)
TRANS-ESTERIFICATION
(MeOH/TMSH)
GC(xGC)-FID/MS analysis
DERIVATIZATION
(BSTFA (1% TMCS) + Pyridin)
GC(xGC)-FID/MS analysis
Tocopherols
Sterols, dehydration
and oxydation products
Squalene
C1
2:0
Monoalkylglycerols
C3
0:0
Fatty
alcohols
C3
5:0
Hydrocarbons
C1
3:0
C1
8:0
C1
6:0
Fatty acids
GCxGC plasma sample: unsaponifiable lipid fraction
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LC-MS-Based Lipidomics
• (Q)TOF
• QqQ
• IT-TOF
• Q
BIOLOGICAL
SAMPLES
EXTRACTION
LC-MS
ANALYSIS
Separation of Lipid
Species
• Lipid identification
• Quantification
• RPLC
• NARPLC
• Silver ion-LC
Ionization Detection
• ESI
• APCI
• APPI
Separation of Lipid
Classes
• NPLC
• HILIC
T. Cajka, O. Fiehn, Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry,
Trends in Analytical Chemistry 61 (2014) 192–206.
DATA
PROCESSING
APCI
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1) Development of a fast liquid chromatography method to quickly and reliable
characterize the lipidic fraction of biological samples
2) Development of LC×LC-qMS for a complex food sample
Case studies
LC-MS
APCI
ESI
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The most commonly used API techniques for lipid characterization are:
Atmospheric pressure chemical ionization (APCI)
Electrospray ionization (ESI)
LC-MS analysis
Polar lipids Nonpolar lipids
[M±H]+/-
[M+X]+/-
(X= Li+, Na+, NH4+, HCOO-etc.)
[M±H]+/-
Abundant fragments
COMPLEMENTARY
TECHNIQUES
Spectra of a phosphatidylcholine (PC 16:0/18:2) extracted from plasma sample
500 600 700 800 m/z0
5000000
10000000
15000000
Inten.
575
758
717744
[M+H]+
[M+Na]+
[M+H]+
500 600 700 800 m/z0
5000000
10000000
15000000
Inten.
758
780
[M+2H-CH3]+
[M+H-41]+
[DAG]+ESI APCI
DIAGNOSTIC FRAGMENTS
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LC-MS analysis
Lipid extracts of different plasma samples were subjected to LC-MS analysis
The global lipid profiling method was based on ultrahigh-performance liquid
chromatography combined with a quadrupole MS analyzer through both ESI and
APCI interfaces operated in both positive and negative ionization mode
Significant advantages of UHPLC over conventional HPLC techniques:
use of columns with smaller particle sizes
more rapid analysis time
improved chromatographic resolution
Column: Titan C18, 100 x 2.1 mm I.D. with particle size of 1.9 µm (Supelco,
Bellefonte, PA)
Particles of uniform size
Lower pressure drop
Higher column permeabilityMobile Phase Velocity (mm/sec)
1 2 3 4 5
35.00
30.00
25.00
20.00
15.00
10.00
5.00
dp = 1.9 µm
dp = 3 µm
dp = 5 µm
dp = 10 µm
Monolithic or
Fused-core (2.7 µm)
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LC-APCI-MS analysis
Column: Titan C18 (100 x 2.1 mm, 1.9 µm).
Mobile phase: H2O with 20 mM HCOONH4 (solv.A) and IPA/ACN/H2O (60:36:4, v/v) with 0.1% HCOOH
(solv.B).
Flow rate: 0.4 mL/min. Injection volume: 10 µL. Oven temperature: 40 °C.
Gradient profile: : 0 min, 80% B, 6 min, 100% B (hold for 16 min). Starting conditions were achieved in
0.01 min and the column was re-equilibrated for 3 min, resulting in a total run time of 25 min.
MS conditions: APCI positive (+) and negative (-) mode. Full scan mode: mass spectral range, m/z 350-1250
(+) and m/z 150-1250 (-); event time, 0.2 s. SIM mode: fatty acid molecular ions were selected in negative
mode, cholesterol internal standard (TAG) were selected in positive ionisation mode. APCI parameters:
nebulizing gas (N2) flow, 3 L/min; drying gas (N2) flow, 15 L/min; interface temperature, 450 °C; DL
temperature, 250 °C; heat block temperature, 200 °C.
Experimental conditions
2.5 5.0 7.5 10.0 12.5 15.0 17.5 min
0.00
0.25
0.50
0.75
1.00
1.25
1.50
(x100.000.000)
1:TIC(+)
LPLs
FFAsCholesterol
PLs
SLs
DAGs
TAGs
CEs
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ESI vs APCI
Inten.
Characteristic spectra of phosphatidylcholines
ESI spectra APCI spectra
400 500 600 700 800 900 m/z
0
25
50
75
100Inten.
599
782741768 804
[M+H]+
[M+Na]+
[M+H-CH3+H]+
[M+H-41]+
[DAG]+
Scan (+)
400 500 600 700 800 900 m/z
0
25
50
75
100826
894
962
[M+HCOO]-
Scan (-)
400 500 600 700 800 900 m/z
0
25
50
75
100
Inten.
782
804 [M+Na]+
[M+H]+
Scan (+)
400 500 600 700 800 900 m/z
0
25
50
75
100Inten.
766709
391
439
[M-CH3]-
[M-RCHCO-choline]-
[M-RCHCO-choline]-
Scan (-)
[M+H-73]-
SIM (-)
200 250 300 m/z
0
25
50
75
100
Inten.
303
255277
200 250 300 m/z
0
25
50
75
100
Inten.
303
255
SIM (-)
329
722
[M-H-N(CH3)3]-
(PC-16:0/20:4)
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Characteristic spectra of sphingomyelins
ESI vs APCI
400 500 600 700 m/z
0
25
50
75
100
Inten.
747
775737470419 507 585 663
Scan (-)
[M+HCOO]-
400 500 600 700 m/z
0
25
50
75
100
Inten.
725
703544 741
Scan (+)
[M+H]+
[M+Na]+
Scan (-)
0
25
50
75
100
[M+H-73]-
[M-CH3]-
[M+HCOO]-
400 500 600 700 m/z
Inten.
582
687630
613 747
[M+H-121]-
643
[M-H-N(CH3)3]-
Scan (+)
0
25
50
75
100
400 500 600 700 m/z
Inten.
520
626703
[M+H]+
689
[M+H-CH3+H]+
(SM-34:1)ESI spectra APCI spectra
[DAG]+
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ESI vs APCICharacteristic spectra of triacylglycerols of #scan 2036, min 11. 96. PN = 46
TIC (+)
400 500 600 700 800 900 m/z
0
25
50
75
100
Inten.
601 857
575
549883
831
603
523
577
805[C48:1+H]+
[C50:2+H]+
[C52:3+H]+
[C54:4+H]+
[C30:0]+
[C32:1]+
[C34:2]+
[C34:1]+
[C36:3]+
[C36:2]+
[C36:1]+
PARENT IONSDAUGHTER IONS
APCI
Only 7 TAGs
were
confirmed
TIC (+)
400 500 600 700 800 900 m/z
0
25
50
75
100
Inten.
874a
879b
905b
900a
853b
848a
822a
827b
[C52:3+X]+
[C48:1+X]+
[C50:2+X]+
[C54:4+X]+
PARENT IONS
30 different TAGs
could be tentatively
identified
ESI
X= a[M+NH4]+ ; b[M+Na]+
77% false positive
C52:3
C48:1
C50:2
C54:4
C20:4C18:0C16:0
C20:3C18:0C16:1
C20:3C18:1C16:0
C20:2C18:1C16:1
C20:2C18:1C16:1
C20:2C18:2C16:0
C20:1C18:3C16:0
C20:1C18:2C16:1
C18:0C18:2C18:2
C18:0C18:1C18:3
C18:1C18:1C18:2
C20:0C18:3C14:0
C20:1C16:1C16:1
C20:1C18:2C14:0
C20:2C16:0C16:1
C20:2C18:1C14:0
C20:3C16:0C16:0
C20:3C18:0C14:0
C18:0C18:2C16:1
C18:0C18:3C16:0
C18:1C18:2C16:0
C18:1C18:1C16:1
C18:2C16:0C16:0
C18:1C16:0C16:1
C18:1C18:1C14:0
C18:0C16:1C16:1
C18:2C18:0C14:0
C20:1C14:0C14:0
C18:1C16:0C14:0
C18:0C16:1C14:0
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ESI vs APCI
Characteristic spectra of cholesteryl esters
Scan (+)
[M+H-FA]+
400 500 600 700 m/z
0
25
50
75
100
Inten.
369
Scan (+)
400 500 600 700 m/z
Inten.
671369
666[M+NH4]
+
[M+Na]+
[M+H-FA]+
0
25
50
75
100
Scan (-)
200 250 300 350 m/z
0
25
50
75
100
Inten.
279
325loss of fatty acid from
cholesteryl ester
[C18:2+HCOO]-
STRUCTURAL INFORMATION
OF THE MOLECULAR SPECIES
(Chol-C18:2)
Scan (-)
no information
ESI spectra APCI spectra
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IT-TOF-ESI-MS/MS vs APCI-qMS
Lyso-phosphocholine PC-18:2
250 500 750 1000 1250 m/z
0.0
2.5
5.0
Inten. (x 1.000.000)
564.3303
504.3091
[M+HCOO]- TIC (-)
[M-CH3]-
200 250 300 m/z
0.0
0.5
1.0
1.5 279
Inten. (x 100.000)
[C18:2-H]-SIM (-)
CONFIRMED BY SIM (-)MS/MS Precursor ion from 504.3391
250 500 750 1000 1250 m/z
00
0.5
1.0279.2345
506.3180 739.1628
Inten. (x 1.000.000)
[C18:2-H]- TIC (-)
MS/MS Precursor ion from 564.3303
250 500 750 1000 1250 m/z
0.0
1.0
2.0
504.3087
279.2333
566.3403
Inten. (x 1.000.000)
[M-CH3]-
[C18:2-H]-
TIC (-) 250 500 750 1000 m/z
00
5.0
10.0
415
504
447
[M-104]-
[M-CH3]-
[M+H-73]-
Inten. (x 1.000.000)
279
TIC (-)
ESI MS/MS spectra
APCI-MS spectra
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POP
POS
PPO
SPO+PSO
MPoO
PPoO
POO
SOO
PLO
PPoL
POL
OOO
PoOO
PLL
OOL
OPoLOLL
POAr
ArOO
DB 0 1 2 3 4 5 6
TRIACYLGLYCEROLS
CP
CS
CM
CO
CPo
CL
CEt
CLn CAr CDh
MOP
DB (FA)
0 1 2 3 4 6
CHOLESTERYL ESTERS
M C14:0
P C16:0
Po C16:1w7
S C18:0
O C18:1w9
L C18:2w6
Ln C18:3w3
Et C20:3w6
Ar C20:4w6
Dh C22:6w3
C Cholesteryl
PPP
PPS
32 peaks identified10 CE:CN 14-22, DB 0-6
22 TAG:PN 44-50, DB 0-6
Ag+×RP-APCI(+)-MS analysis of plasma lipids
Future research will be focused on the development of an LC×LC method using
RPLC×HILIC but employing an APCI-qMS to improve the level of information,
without using a tandem MS
132.01 198.02 min
0.0
0
3
.00
6
.00
9
.00
12
.00
1
5.0
0 min
2D
RP
-LC
1D HILIC
18:0/18:1
18:1/20:2
18:1/18:1
18:0/20:4
16:0/18:120:2/20:4
16:0/20:3
16:0/18:2
16:0/20:4
18:1/20:5
16:1/20:4
147,5
150,0
152,5
155,0
157,5
min
0
2500000
5000000
7500000
10000000
12500000
15000000
17500000
20000000
22500000
25000000
27500000
30000000
32500000
35000000
TIC
(+) 1
62.5
165.0
167.5
170.0
172.5
min
35000000 0
2500000
5000000
7500000
10000000
12500000
15000000
17500000
20000000
22500000
25000000
27500000
30000000
32500000
TIC
(+)
14
5-1
60 m
in 2
D-L
C c
ut
16
0-1
75 m
in 2
D-L
C c
ut
18:1/20:5
20:2/20:4
18:0/20:4
18:0/18:1
18:1/20:2
18:1/18:1
16:0/18:1
16:0/20:3
16:0/20:4
16:0/18:2
16:1/20:4
HILIC×RP-LC contour plot for PC molecular species in plasma
HILIC×RP-LC contour plot for PC molecular
species in plasmaAg+×RP-APCI(+)-MS contour plot for TAGs
and CEs in plasma
5.0
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RPLC-APCI MS Analysis of Menhaden Fish Oil TAGs
30 PN 52
20.0 25.0 30.0 35.0 40.0 45.0
0.0
1.0
2.0
3.0
4.0
min
(TIC)
Inten. (x1,000,000)
Column: Ascentis Express C18, 150 × 4.6 mm i.d., 2.7 mm
Mobile phase, A: ACN; Solvent B: IPA; Injection volume: 5 L
Gradient: 0 min 0% B, 50 min 70% B, (hold for 5 min); 56 min, 0% B
Flow rate: 1 mL/min; DP at 70% IPA concentration: 21.0MPa
Detection: APCI-MS
1 column
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Column: 4 serially coupled Ascentis Express C18, total staionary phase lenght: 600 mm
Mobile phase, A: ACN; Solvent B: IPA; Injection volume: 5 L
Gradient: 0 min 0% B, 200 min 70% B, (hold for 20 min); 224 min, 0% B
Flow rate: 1 mL/min; DP at 70% IPA concentration: 89.5 MPa
Detection: APCI-MS
75.0 100.0 125.0 150.0 175.0min
Inten. (x1,000,000)
(TIC)
30
34
3638
40 42 4446+47
48
50
52
0.0
0.5
1.0
1.5
2.0
2.5
RPLC-APCI MS Analysis of Menhaden Fish Oil TAGs
4 columns
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68–125 min Enlargement of the TIC Chromatogram
Due the high
content of
omega-3 PUFAs,
the oil represent a
viable source of
dietary lipids.Eicosapentaenoic acid
20:5(v3)
70 80 90 100 110 120
0.0
1.0
2.0
3.0
4.0
Inten. (x1,000,000)
(TIC)
min
1
2 3
10
4 5
6 7+
8+
9 11
12
13
+1
4 15
+1
6+
17
18 19
20
2122
23
24
25
26
27
+2
8+
29
30
31
32
+3
334
35
36
37
+3
839
40
41
+4
2+
43
44
+4
5+
46
47
48
49
+5
051
52 5
3 54
55
56
57
EpEpEp
(DB=15, PN=30)
DhDhDh
(DB=18, PN=30)
Docosahexaenoic acid
22:6(v3)
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130 140 150 160 170 180
0.0
1.0
2.0
3.0
4.0
Inten. (x1,000,000)
(TIC)
min
58
+5
9+
60
61
+6
26
3+
64
+6
56
7+
68
66
69
+7
0+
71
72+
73+
74 7
57
677
78
+7
98
0+
81
83
82
84
+8
58
6+
87
+8
889
90
+9
192
93
94
95
96
97
98
+9
9 101
100
102
103
104
105
106
107108
109
11
0111
11
2
11
411
3
11
511
611
7+
11
811
9+
12
01
21
+1
22
123
12
4+
12
5126
12
7+
12
8
129 1
30
131
132
133
134
135
136
137
[PN values (30–52), DB values (0–18)]
One C18 column (150 mm) Four C18 columns (600 mm)
137 TAGs identified
125-188 min Enlargement of the TIC chromatogram
No unambiguous TAG identification
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1D
Column: Nucleosil ion-exchange loaded with silver ions (250 mm × 4.0 mm, 5 m)
Mobile phase: (A) 1.0 % BCN in Hex; (B) 5.0 % BCN in Hex
Linear gradient: 0 min 0% B; 100 min 100% B
Flow rate: 0.8 mL/min
Inj. vol.: 20 L
Sample: menhaden oil (40 mg in 10 mL Hex)
Off-line Ag+-LC×RPLC-APCI MS
2D
Column: Ascentis Express C18 Fused-core (150 x 4.6 mm)
Mobile phase: (A) ACN; (B) IPA
Linear gradient: 0 min 0% B; 50 min 70% B
Flow rate: 1.0 mL/min
Inj. vol.: 10 L
Detection: qMS (APCI+)
The combination of Ag+- and RP-separations provides information
that cannot be achieved by any of these when applied on its own
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10 20 30 40 50 60 70 80 90min
0
25
50
75
100
125
150
175
200
225mV
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
DB0 18
The 16 fractions were evaporated to dryness under a nitrogen stream
and re-dissolved in 1.0 mL acetone
2D
RPLC
1D
Ag+LC
Fraz.4
Po
C1
6:4
M
Po
PoH
+L
C1
6:2
M+
C1
6:2
C1
6:2
PO
tPoM
+P
oH
ME
pP
oM
+P
C1
6:4
P
Dh
MM
Ep
PP
d+
Ep
PoP
d+
Ep
MP
d
Ln
PoP
o+
OP
oH
ArP
oM
+ O
tPP
oE
pP
Po+
Ep
OM
Ep
PM
+P
PC
16
:4D
hP
MD
hP
Pd
OO
tPE
pO
PE
pP
PD
hP
P
ArO
P+
C21
:5P
P
Ep
SP
Dh
SP
Dh
SS
20 25 30 35 40 45 min
0
500000
1000000
1500000
TIC(+)
Fraz.4
Po
C1
6:4
M
Po
PoH
+L
C1
6:2
M+
C1
6:2
C1
6:2
PO
tPoM
+P
oH
ME
pP
oM
+P
C1
6:4
P
Dh
MM
Ep
PP
d+
Ep
PoP
d+
Ep
MP
d
Ln
PoP
o+
OP
oH
ArP
oM
+ O
tPP
oE
pP
Po+
Ep
OM
Ep
PM
+P
PC
16
:4D
hP
MD
hP
Pd
OO
tPE
pO
PE
pP
PD
hP
P
ArO
P+
C21
:5P
P
Ep
SP
Dh
SP
Dh
SS
20 25 30 35 40 45 min
0
500000
1000000
1500000
TIC(+)
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Ag+0
5
10
15
20
25
30
35
40
45
50
0 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
RP
min
0 18
DB
PN
28
54
Total number of identified TAGs: 273
Off-line Ag+LC×RPLC-APCI MS
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1D
Column: cation-exchange, 150 x 1.0 mm i.d., 5 mm dp (silvered in lab)
Mobile phase: 1% BCN in n-hexane (solvent A); 5 % BCN in n-hexane (gradient)
Flow rate: 20 L/min
Inj. vol.: 1 L
2D
Column: Ascentis Express C18 150 x 2.1 mm i.d.,
Mobile phase: A) isopropanol; B) acetonitrile (gradient)
Flow rate: 0.6 mL/min
Detection: qMS (APCI+)
Modulation time: 11 min
On-line Stop-flow Ag+LC×RPLC-APCI MS
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RP
-LC
Ag+-LC
DB 18110 20 30 40 50 60 min
1
2
3
4
5
67
8
9
10
11 12
13 14
151617 18
0
25
50
75
100
125
150
mV
Ag+LC-ELSD5
2
DB 18
PN
38 1
On-line Stop-flow Ag+LC×RPLC-APCI MS
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40
42
44
46 4
8 50
38
3
0
DB 1 18
Ag+
RP 5252
min
min
On-line Stop-flow Ag+LC×RPLC-APCI MS
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Serially coupled columns (4 C18):
• Flow rate: 1 mL/min
• Analysis time: 200 min
• Peak capacity: 210
• TAGs identified: 153
On-line Stop-flow Ag+-LC×RP-LC:
• 1st dimension flow rate: 20 mL/min
• 2nd dimension flow rate: 600 mL/min
• Analysis time: 600 min
• Peak capacity: 1265
• TAGs identified: 180
Method Performances for TAG Analysis in Menhaden Oil
600 mm
2.7 m
Off-line Ag+-LC×RP-LC:
• 1st dimension flow rate: 0.8 mL/min
• 2nd dimension flow rate: 1.0 mL/min
• Analysis time: 900 min
• Peak capacity: 2160
• TAGs identified: 253
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CONCLUSIONS
•Using a mono-dimensional LC-APCI-qMS we have identified 90 lipid species
• APCI provides informative spectra, with a protonated molecular ion and fragmentations,
which allow structural elucidation
• LC-APCI-qMS can be a valid and simple technique which can provide almost similar
information compared to more sophisticated ones (HRMS, QqQ MS, etc) for lipidomics
studies
• APCI-MS can often be used as an alternative to ESI MS/MS for analysis of lipids
• Powerful LC approaches e.g. UHPLC and comprehensive LC are valuable tools to
elucidate lipidic profile of complex food samples
•Comprehensive LC, due to the orthogonality of the stationary phases employed viz.
Ag+×RP-LC can be successfully employed for unravelling of complex lipidic samples
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…and you for your kind attention
I wish to thanks: