looking to the future - mathematics and computer scienceitf/talks/070703 karen nz foster.pdf ·...
TRANSCRIPT
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Ian Foster
Computation Institute
Argonne National Lab & University of Chicago
http://ianfoster.typepad.com
Looking to the Future
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An American Philosopher Speaks on the Value of KAREN
“80 percent
of success is
showing up”
Woody Allen
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J.C.R. Licklider Reflecting in 1960 on Where His Time Went
About 85 per cent
of my “thinking”
time was spent
getting into a
position to think,
to make a decision,
to learn something
I needed to know
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For Example …
“At one point, it was necessary to compare six
experimental determinations of a function
relating speech-intelligibility
to speech-to-noise ratio.
No two experimenters had
used the same definition or
measure of speech-to-noise
ratio. Several hours of
calculating were required to get the data into
comparable form. When they were in
comparable form, it took only a few seconds
to determine what I needed to know.”
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Man-Computer Symbiosis
“… will involve very close coupling
between the human and the electronic
members of the
partnership …
Preliminary analyses
indicate that the
symbiotic partnership
will perform intellectual operations
much more effectively than man alone
can perform them.”
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Licklider’s Vision
� He imagined
� Low-cost personal computers
� Organized, easily searchable data stores
� Intuitive user interfaces
� Computer aided reasoning
� Interactive numerical simulation
� He didn’t mention (at least in CMS paper)
� Standard representations of knowledge
� Collaborative problem solving among people
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Fast Forward to 2007
“Compare six experimental
determinations of a function
relating speech-intelligibility
to speech-to-noise ratio”
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Emergence of New Problem Solving Methodologies
<0 1700 1950 1990
Empirical
Data
Theory
Simulation
eScience: When brute force doesn’t work anymore (Szalay)
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Functional Magnetic Resonance Imaging (fMRI)
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The fMRI Data Center
(www.fmridc.org)
� A typical study comprises
3 groups,
20 subjects/group,
5 runs/subject,
300 volumes/run
� 90,000 volumes, 60 GB raw
� 1.2 million files processed
� 100s of such studies in total
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Functional MRI
Analysis
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A Simple Analysis
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First Generation Grids:On-Demand/Batch ComputingFocus on aggregation of many resources for
massively (data-)parallel applications
EGEE
Globus
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Dynamic Allocation for Dynamic Workloads
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Many Users Analyze fMRI Datain Many Different Ways
� Wide range of analyses
� Testing, interactive
analysis, production runs
� Data mining
� Parameter studies
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Second Generation Grids:Service-Oriented Science
� Empower many more users by enabling
on-demand access to services
� Grids become an enabling technology for
service oriented science (or business)
� Grid infrastructures host services
� Grid technologies used to build services
“Service-Oriented Science”, Science, 2005
ScienceGateways
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“Web 2.0”
� Software as services
� Data- & computation-rich
network services
� Services as platforms
� Easy composition of services to create new
capabilities (“mashups”)—that themselves
may be made accessible as new services
� Enabled by massive infrastructure buildout
� Google projected to spend $1.5B on
computers, networks, and real estate in 2006
� Many others are spending substantially
� Paid for by advertising
Declan Butler,Nature
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Service-Oriented Science:E.g., Virtual Observatories
Data ArchivesData Archives
User
Analysis toolsAnalysis tools
Gateway
Figure: S. G. Djorgovski
Discovery toolsDiscovery tools
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Service-Oriented Science
People create services (data or functions) …
which I discover (& decide whether to use) …
& compose to create a new function ...
& then publish as a new service.
� I find “someone else” to host services,
so I don’t have to become an expert in
operating services & computers!
� I hope that this “someone else” can
manage security, reliability, scalability, …
!!
“Service-Oriented Science”, Science, 2005
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caBIG: sharing of infrastructure, applications, and data.
Data
Integration!
Service-Oriented Science& Cancer Biology
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Microarray
NCICB
ResearchCenter
Gene Database
Grid-Enabled Client
ResearchCenter
Tool 1
Tool 2caArray
Protein Database
Tool 3
Tool 4
Grid Data Service
Analytical Service
Image
Tool 2
Tool 3
Grid Services Infrastructure
(Metadata, Registry, Query,
Invocation, Security, etc.)
Grid Portal
Cancer Bioinformatics Grid
Globus
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MEDICUS: Management of DICOM Images
Grid PACS(Image Storage)GridFTP Server
Imaging Modality
Dicom Grid Interface Service (DGIS)
Cache ImageStorage
1
.
Grid PACS Meta Catalog(DICOM Image Attributes)
OGCE-DAI
.
Hospital Domain
Grid Node
Grid Node
Imaging Technologist
Stephan Erberich, Manasee Bhandekar, Ann Chervenak, et al.
Globus
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Children’s Oncology Grid:A MEDICUS Deployment
Globus
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MEDICUS Under the Covers
� DICOM images� Send (publish)� Query/Retrieve (discover)
� Grid Archive� Fault tolerant� Bandwidth
� Security� Authentication� Authorization� Cryptography
� Access� Web portal
� Applications� Computing� Data Mining
DICOM Grid Interface Service (DGIS)
+Meta Catalog Service (OGSA-DAI)
Data Replication Service (DRS)
Grid Web Portal, OGCE / GridSphere
Globus Toolkit Release 4
GRAM, OGSA-DAI
X.509 Certificates +
MyProxy Delegation
Globus
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Collaborative Analysis
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The Virtual Data Concept
� Capture information about relationships among
� Data (varying locations and representations)
� Programs (& inputs, outputs, constraints)
� Computations (& execution environments)
� Apply this information to:
� Discovery of data and programs
� Computation management
� Provenance
� Planning and scheduling
� Performance
optimization
Data
Program Computation
operates-on
execution-of
created-by
consumed-by
A Virtual Data System for Representing, Querying & Automating Data Derivation [SSDBM02]
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Provenance Model
� Temporal aspect
� Prospective provenance� Recipes for how to produce data
� Metadata annotations about procedures and data
� Retrospective provenance� Invocation records of run time environments and resources used: site, host, executable, execution time, file stats ...
� Dimensional aspect
� Virtual data relationships
� Derivation lineage
� Metadata annotations
Relationships
Derivation
Lineage
Metadata Annotations
Applying the Virtual Data Provenance Model [IPAW06]
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Query Context: fMRI Analysis
3a.h
align_warp/1
3a.i
3a.s.h
softmean/9
3a.s.i
3a.w
reslice/2
4a.h
align_warp/3
4a.i
4a.s.h 4a.s.i
4a.w
reslice/4
5a.h
align_warp/5
5a.i
5a.s.h 5a.s.i
5a.w
reslice/6
6a.h
align_warp/7
6a.i
6a.s.h 6a.s.i
6a.w
reslice/8
ref.h ref.i
atlas.h atlas.i
slicer/10 slicer/12 slicer/14
atlas_x.jpg
atlas_x.ppm
convert/11
atlas_y.jpg
atlas_y.ppm
convert/13
atlas_z.jpg
atlas_z.ppm
convert/15
First Provenance Challenge, http://twiki.ipaw.info/
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Query Examples� Query by procedure signature
� Show procedures that have inputs of type subjectImage and output types of warp
� Query by actual arguments
� Show align_warp calls (including all arguments), with argument model=rigid
� Query by annotation
� List anonymized subject images for young subjects:� Find datasets of type subjectImage , annotated with
privacy=anonymized and subjectType=young
� Basic lineage graph queries
� Find all datasets derived from dataset ‘5a’
� Graph pattern matching
� Show me all output datasets of softmean calls that were aligned with model=affine
� Multi-dimensional query
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“Grids are not just communities of computers, but communities of researchers, of people.”
— Peter Arzberger
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PRAGMA
� New communities:
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Globus Downloads Last Month
Globus
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Grids are Communities of People as well as Computers
� Based on (technology-mediated) trust
� Common goals
� Processes and policies
� Reward systems
� That share resources
� Computers
� Data
� Sensor networks
� Services
� Supported by software, standards, infrastructure
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Security Services for Virtual Organization Policy
� Attribute Authority (ATA)� Issue signed attribute assertions (incl. identity, delegation & mapping)
� Authorization Authority (AZA)� Decisions based on assertions & policy
� Use with message- or transport-level security
VO AService
VOATA
VOAZA
MappingATA
VO BService
VOUser A
Delegation AssertionUser B can use Service A
VO-A Attr �
VO-B Attr
VOUser B
Resource AdminAttribute
VO MemberAttribute
VO Member Attribute
Globus
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Bennett Berthenthal et al., www.sidgrid.org
Social Informatics Data Grid
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Collaborative Tagging and Other Web 2.0 Things
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Automating Science Protocols
Protocol: “a predefined written procedural
method in the design and implementation
of experiments. This should establish
standards that can be adequately assessed
by peer review and provide for successful
replication of results by others in the field.”
(Wikipedia)
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Robot Scientist(University of Wales)
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Microfluidic Bubble Logic(Prakash and Gershenfeld)
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Man-Computer Symbiosis:50 Years On
� Service oriented science
� Provenance
� Virtual organizations
� Automating science protocols
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Concluding Thoughts
� Networks are necessary but not sufficient
� There is only global software
� We build communities by doing experiments
� Persistent infrastructure is needed
� Persistent workers are needed
� Showing up
� Team New Zealand?
� Where are the students?
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Travel is fatal to prejudice, bigotry and narrow-
mindedness