Supplementary Table S1: INSeq analysis of C. jejuni 81-176 insertion mutants1

Gene ID symbol Annotation

B1_T1_0hr_IN

B1_T1_0hr_read

B1_T1_2hr_IN

B1_T1_2hr_read

B1_T2_0hr_IN

B1_T2_0hr_read

B1_T2_2hr_IN

B1_T2_2hr_read

B2_T1_0hr_IN

B2_T1_0hr_read

B2_T1_2hr_IN

B2_T1_2hr_read

B2_T2_0hr_IN

B2_T2_0hr_read

B2_T2_2hr_IN

B2_T2_2hr_read

B3_T1_0hr_IN

B3_T1_0hr_read

B3_T1_2hr_IN

B3_T1_2hr_read

B3_T2_0hr_IN

B3_T2_0hr_read

B3_T2_2hr_IN

B3_T2_2hr_read

CJJ81176_0001 rplC 50S ribosomal protein L3 1 15 1 28 1 18 1 40 1 112 1 60 1 157 1 88 1 142 1 330 1 238 1 243CJJ81176_0002 rpsJ 30S ribosomal protein S10 2 6 1 6 1 3 1 5 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0003 - RNA pseudouridine synthase family protein 3 20 4 19 3 23 3 14 3 68 2 45 3 45 2 31 3 134 3 73 3 117 3 89CJJ81176_0004 - metallo-beta-lactamase family protein 3 4 2 4 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0005 ksgA dimethyladenosine transferase 2 4 4 7 1 3 1 4 3 28 2 37 0 0 2 14 1 13 2 82 2 25 3 84CJJ81176_0006 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0007 -ribosomal RNA large subunit methyltransferase N 14 85 6 41 9 90 3 29 7 335 3 142 5 362 3 88 5 249 3 125 5 251 3 143

CJJ81176_0010 - lipopolysaccharide core biosynthesis protien 28 230 19 185 18 260 16 193 15 904 11 532 14 895 11 468 14 842 9 464 12 712 10 499CJJ81176_0013 - acetyltransferase 28 1096 26 1068 26 946 24 1023 23 4985 25 5928 26 5122 25 6052 25 4581 22 3539 23 4151 20 2819CJJ81176_0014 leuD isopropylmalate isomerase small subunit 30 640 28 548 28 539 22 571 23 2849 20 2761 20 3139 20 2595 26 2326 16 1980 21 2202 17 1872CJJ81176_0015 leuC isopropylmalate isomerase large subunit 83 3001 78 3147 81 3172 71 3301 74 12473 72 13967 73 13528 70 15005 79 13039 65 14353 75 14332 67 14143CJJ81176_0016 leuB 3-isopropylmalate dehydrogenase 65 4033 58 7322 58 3998 53 7125 51 18377 51 30608 53 18793 52 31544 49 18391 46 39675 48 19158 45 46390CJJ81176_0017 leuA 2-isopropylmalate synthase 96 3079 90 3189 82 3177 74 3103 75 14243 75 17736 77 14347 70 17420 76 13467 61 15927 71 14677 67 14842CJJ81176_0018 - hypothetical protein 27 349 18 161 25 367 15 161 17 1546 10 676 12 1354 9 568 20 1470 10 665 17 1336 7 585CJJ81176_0019 - hypothetical protein 33 413 26 344 27 429 21 333 24 1851 20 1817 23 1826 20 1767 24 2630 14 2575 21 2479 16 1964CJJ81176_0020 queF 7-cyano-7-deazaguanine reductase 13 201 6 186 8 189 5 170 6 698 5 647 5 705 5 538 5 765 3 1040 5 844 3 826CJJ81176_0021 - hypothetical protein 18 212 12 166 13 201 9 171 11 900 9 783 10 912 11 876 15 1098 12 1483 13 1303 11 1433CJJ81176_0022 metA homoserine O-succinyltransferase 37 1217 36 1157 36 1216 33 1140 32 4713 21 4302 29 4644 24 4420 27 4475 19 4851 24 4785 18 5205CJJ81176_0023 metX homoserine O-acetyltransferase 72 1155 69 1254 73 1247 56 1226 58 5675 55 5178 58 5569 54 4896 61 4648 41 5022 54 4559 46 4808CJJ81176_0024 - hypothetical protein 18 657 18 597 17 630 15 625 13 2821 13 3124 13 2752 14 3088 15 2976 13 2432 13 3102 14 2099CJJ81176_0025 flgE flagellar hook protein FlgE 8 27 4 18 3 25 1 10 2 53 1 23 2 64 1 31 2 41 1 21 2 25 2 35CJJ81176_0026 ruvC Holliday junction resolvase 3 63 3 14 2 15 2 10 2 87 2 74 2 64 2 74 2 58 2 34 2 51 2 65CJJ81176_0027 dnaA chromosomal replication initiation protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0028 dnaN DNA polymerase III subunit beta 5 11 3 6 1 4 2 8 0 0 1 10 0 0 0 0 0 0 1 12 0 0 1 11CJJ81176_0029 gyrB DNA gyrase subunit B 5 17 5 37 3 18 2 29 3 74 3 87 2 70 2 74 3 60 1 58 1 20 2 38CJJ81176_0030 sorB hypothetical protein 22 491 20 475 21 508 18 481 18 2441 16 2234 18 2436 16 2450 17 2198 16 3018 17 2261 15 3297CJJ81176_0031 sorA molybdopterin oxidoreductase 86 2735 79 3687 84 2612 77 3570 73 10358 67 11397 70 10728 71 11965 72 12520 64 14209 66 13209 69 14677CJJ81176_0032 - Na+/H+ antiporter family protein 74 2246 63 2899 66 2450 58 2979 56 9978 51 7723 60 10554 57 8180 59 11816 48 11125 54 12796 49 12165CJJ81176_0033 gltB glutamate synthase, large subunit 260 8845 241 11510 241 9102 221 11491 220 45312 194 47066 213 47241 208 47689 210 49000 180 51446 190 56381 184 53486CJJ81176_0034 - hypothetical protein 122 3106 104 3192 109 3506 98 3423 97 14227 90 13616 90 14771 88 13697 105 12167 81 12089 90 12773 77 12400CJJ81176_0035 gltD glutamate synthase subunit beta 68 2304 62 2606 65 2479 58 2810 57 9730 53 10237 55 9758 54 10681 58 9948 51 11289 54 10318 51 10355CJJ81176_0036 rnhB ribonuclease HII 29 311 22 257 25 287 20 303 20 1582 17 1710 20 1611 19 1670 21 1635 16 1767 17 1647 18 1829CJJ81176_0037 comEA competence protein ComEA 17 150 16 115 13 177 10 130 13 718 11 519 9 788 7 530 11 637 5 525 9 687 7 529CJJ81176_0038 rbr rubrerythrin 28 1346 30 1120 27 1122 25 1207 23 3864 22 5467 23 3861 26 5002 28 5110 24 4946 22 6161 23 3756CJJ81176_0039 ilvD dihydroxy-acid dehydratase 104 3683 96 2930 98 3351 79 2884 88 15297 75 10843 85 16014 76 11054 80 9892 66 9071 68 10665 63 9014CJJ81176_0040 - inner membrane protein YagU 7 298 8 173 6 197 7 166 6 1267 5 1686 5 1168 5 1591 6 1445 6 1828 4 1683 5 1546CJJ81176_0041 - membrane protein, putative, degenerate 20 368 18 335 20 367 17 341 16 1777 14 2001 14 1720 16 2129 17 1615 14 2517 14 1855 12 2385CJJ81176_0042 - hypothetical protein 82 2079 73 1722 75 1872 59 1704 66 5734 57 4731 61 6098 56 5000 62 6745 44 5831 55 7601 49 5660CJJ81176_0043 queC Queuosine biosynthesis protein 23 76 13 47 16 71 9 50 13 234 3 47 12 221 7 102 10 197 5 98 7 155 3 59CJJ81176_0044 cjaE DsbB family disulfide bond formation protein 87 1825 75 1661 80 1934 74 1736 68 9010 64 10620 66 9016 64 10316 68 8836 56 10170 60 9208 55 9430CJJ81176_0045 - hypothetical protein 10 177 9 123 10 150 8 113 6 454 6 439 6 416 8 405 6 375 6 439 7 383 6 389CJJ81176_0046 - methyl-accepting chemotaxis protein 81 1168 66 649 74 1159 48 643 58 4926 46 4047 57 5095 48 3894 62 5679 36 4156 47 5860 35 3653CJJ81176_0047 ccpA-1 cytochrome c551 peroxidase 50 772 41 413 47 828 35 436 35 2991 33 1768 33 3129 33 1872 36 2596 29 1846 33 3021 29 1867CJJ81176_0048 - fumarylacetoacetate hydrolase family protein 76 3700 73 3883 74 3740 66 3901 61 13430 58 16341 64 13913 64 16713 65 14975 53 17413 55 16053 53 17435CJJ81176_0049 - RNA pseudouridine synthase family protein 45 1120 39 831 41 1092 38 809 35 5424 35 5016 35 5234 34 4650 36 6290 30 7854 35 6235 32 7066CJJ81176_0050 purB-1 adenylosuccinate lyase 2 33 1 54 1 30 1 53 1 467 1 1461 1 453 1 1613 1 129 1 165 0 0 1 434CJJ81176_0051 nrdA ribonucleotide-diphosphate reductase subunit 7 56 5 184 2 56 3 151 1 376 2 773 2 341 1 795 1 187 2 748 2 213 2 726CJJ81176_0052 - sodium/dicarboxylate symporter 32 93 10 22 19 86 3 21 17 416 4 82 15 370 6 148 17 519 7 229 15 456 4 221CJJ81176_0053 thyX FAD-dependent thymidylate synthase 8 177 7 114 7 132 7 97 6 877 5 493 6 883 6 461 5 1580 7 1193 5 1746 6 1462CJJ81176_0054 pyrG CTP synthetase 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0055 recJ exonuclease RecJ 28 76 7 17 17 71 5 20 9 178 3 130 10 205 3 114 12 214 2 43 8 200 2 27CJJ81176_0056 ansA L-asparaginase 43 378 38 342 37 386 29 340 31 1323 29 1173 29 1512 30 1240 32 1448 24 1031 30 1422 22 934CJJ81176_0061 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0063 - hypothetical protein 61 738 55 597 53 780 38 644 40 2919 37 3132 39 2961 36 3307 47 3445 30 2825 42 3556 37 3157CJJ81176_0064 - cytochrome c family protein 83 2567 77 2951 77 2819 71 3142 68 11743 65 14204 65 12219 67 15633 69 12032 55 15833 61 13009 55 15519CJJ81176_0065 - hypothetical protein 22 543 20 674 21 567 17 662 16 1614 14 1294 15 1584 15 1094 18 1383 13 1004 16 1384 16 853CJJ81176_0066 - cytochrome c biogenesis protein 142 4634 127 5088 129 4562 110 5268 109 18634 107 20258 105 18907 112 20809 109 16295 91 19470 98 17186 95 20135CJJ81176_0067 ggt gamma-glutamyltransferase 137 9022 134 9802 128 7684 119 9398 118 47263 116 58886 116 48653 118 59382 117 43306 104 52767 108 47472 102 51441CJJ81176_0068 - type II restriction-modification enzyme 167 10859 159 13923 160 10431 145 14129 143 47138 138 67991 143 49241 137 70439 145 47036 130 82407 135 50736 130 89467CJJ81176_0069 - hypothetical protein 48 920 45 691 44 811 38 701 36 2777 31 2473 32 2597 31 2762 36 3643 30 3262 35 3675 31 3408CJJ81176_0070 - transglycosylase domain-containing protein 92 2334 86 2586 81 2535 76 2605 71 10182 72 8972 71 10284 69 9294 72 9626 60 9907 69 10219 61 10352CJJ81176_0071 - putative integral membrane protein 70 808 60 592 57 845 45 632 44 4097 42 3099 43 4235 48 3314 49 3626 34 3518 40 3485 36 3605CJJ81176_0072 - hypothetical protein 49 1237 42 1038 46 1182 38 1029 39 4520 37 4812 42 4396 35 4337 40 3972 33 4534 35 3911 33 4395CJJ81176_0073 - Bcr/CflA family drug resistance transporter 71 5841 63 5706 64 4377 55 5429 55 19405 59 23720 56 20770 57 23963 56 19642 52 21581 54 21256 51 22564CJJ81176_0074 - hypothetical protein 47 1647 42 1695 47 2000 38 1974 37 7772 30 8970 40 8410 37 9800 42 8690 27 11073 36 9405 34 12217CJJ81176_0075 tsdA bi-functional tetrathionate reductase 71 2270 68 2259 68 2279 68 2215 62 10004 65 10023 64 10410 65 9853 62 9505 56 9523 59 9849 55 9565CJJ81176_0076 - hypothetical protein 35 1121 31 1020 35 1267 25 1105 28 5726 28 5504 26 5691 25 5618 32 6321 28 5697 30 5495 29 5876CJJ81176_0077 typA GTP-binding protein TypA 40 261 18 189 35 304 12 198 19 936 5 2092 17 993 4 2200 16 551 4 842 14 611 3 836CJJ81176_0078 - hypothetical protein 12 78 13 55 10 96 5 46 8 408 8 181 11 536 7 198 7 138 4 73 6 122 4 132CJJ81176_0079 fliK hypothetical protein 17 34 5 22 6 21 3 19 10 229 2 99 7 263 3 97 5 76 2 55 3 81 2 70CJJ81176_0080 flgD flagellar basal body rod modification protein 16 97 5 42 10 103 4 42 11 535 6 235 9 560 7 217 9 633 5 384 9 699 5 359CJJ81176_0081 flgE-1 flagellar hook protein 104 3516 97 4110 95 3607 90 4063 82 16377 78 18280 79 16183 77 17143 84 16443 73 20330 79 16081 69 17367CJJ81176_0082 - hypothetical protein 117 3689 108 3458 109 3465 95 3606 90 14320 87 16876 90 15197 92 17890 99 15247 81 16449 85 15924 75 18436CJJ81176_0083 - hypothetical protein 20 171 14 122 14 170 10 111 13 482 7 247 10 391 9 267 9 422 8 244 8 426 7 219CJJ81176_0084 - hypothetical protein 6 55 6 45 7 68 6 48 5 176 5 126 6 250 4 117 7 223 6 192 6 243 6 227CJJ81176_0085 - anion transporter 19 884 18 1120 18 797 16 1006 17 3371 17 3058 16 3472 18 3292 20 2305 16 1880 18 2276 16 2334CJJ81176_0086 - anion transporter 10 487 11 776 10 420 9 760 8 2359 8 3826 8 2130 9 3361 10 2664 10 7207 12 3069 10 4012CJJ81176_0087 - 2-oxoglutarate/malate translocator 7 138 7 238 5 145 7 238 4 815 5 1440 4 784 6 1506 5 848 5 1712 4 917 5 1263CJJ81176_0088 - anion transporter 6 99 6 106 6 134 6 128 6 584 6 839 6 591 6 861 6 448 6 744 6 532 6 558CJJ81176_0089 - 2-oxoglutarate/malate translocator 32 2568 30 2328 32 2710 28 2511 29 7804 29 9681 31 7631 29 9403 29 6285 24 9565 27 6475 25 8734CJJ81176_0090 mnmA tRNA-specific 2-thiouridylase MnmA 2 26 3 41 2 33 2 37 2 164 2 159 2 178 2 148 2 153 1 21 1 147 2 46CJJ81176_0091 - lysine decarboxylase family protein 6 43 9 124 4 43 5 101 5 132 4 183 4 91 4 164 3 101 2 256 2 96 2 246CJJ81176_0092 - hypothetical protein 42 937 35 971 40 1055 27 1160 29 4112 28 4020 30 4384 28 4022 25 3495 18 2853 21 3442 20 3111CJJ81176_0093 - hypothetical protein 45 1028 39 917 42 1056 33 846 38 3855 31 3258 35 3811 34 3421 39 4073 31 4150 37 4159 29 4071CJJ81176_0094 - HmcD domain-containing protein 42 1382 36 1258 39 1364 35 1297 38 5133 36 5926 37 5761 35 6047 39 5917 30 6374 37 6906 33 6268CJJ81176_0095 - peptidase family protein 4 53 5 29 5 45 3 32 4 146 3 113 4 114 3 122 5 127 4 125 3 132 3 92CJJ81176_0096 - peptidase family protein 28 485 26 527 28 481 20 523 19 1985 20 1127 20 1884 20 1256 21 2222 16 1275 19 2311 21 1492CJJ81176_0097 fliY flagellar motor switch protein FliY 29 72 0 0 23 79 2 4 17 546 1 8 19 552 0 0 17 371 0 0 16 385 0 0CJJ81176_0098 fliM flagellar motor switch protein FliM 53 457 2 3 50 499 1 2 52 4756 2 17 50 4762 0 0 50 3413 0 0 48 3371 0 0CJJ81176_0099 fliA flagellar biosynthesis sigma factor 34 230 2 3 26 250 1 15 29 2739 1 12 27 2736 1 7 23 1572 2 37 17 1597 0 0CJJ81176_0100 - hypothetical protein 14 71 1 1 13 88 1 2 10 592 2 25 12 689 2 26 13 357 2 13 7 297 1 12CJJ81176_0101 flhG ParaA family ATPase 15 33 2 2 8 35 0 0 7 153 1 8 7 126 2 5 8 164 0 0 6 150 1 6CJJ81176_0102 flhF flagellar biosynthesis regulator FlhF 60 330 7 21 49 349 4 15 51 3371 2 51 52 3453 1 17 50 2634 2 131 44 2651 2 151

CJJ81176_0103 folK

2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 5 87 3 32 3 90 2 25 3 412 2 109 3 461 2 112 3 274 3 134 3 332 2 181

CJJ81176_0104 aroQ 3-dehydroquinate dehydratase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0105 - chlorohydrolase 2 5 2 7 1 5 1 4 1 25 2 35 1 31 1 10 1 14 0 0 0 0 0 0CJJ81176_0106 sppA signal peptide peptidase SppA, 36K type 44 1455 43 1696 42 1555 39 1896 37 5533 38 7552 33 6100 36 6724 38 5580 32 7359 33 5730 31 7554CJJ81176_0107 - hypothetical protein 61 1618 51 1323 55 1511 45 1251 45 6503 45 5088 45 6874 44 5143 49 7561 38 6023 45 7705 37 5682CJJ81176_0108 - hemerythrin family non-heme iron protein 6 250 4 515 5 338 4 684 5 1902 5 2337 4 2105 4 2728 4 227 3 238 4 226 3 162CJJ81176_0109 - hypothetical protein 15 180 14 142 16 197 12 150 11 769 9 810 10 778 9 863 16 834 9 882 15 900 14 998CJJ81176_0110 - hypothetical protein 31 902 28 904 25 870 22 921 19 3259 17 2951 19 2978 16 2857 21 3481 15 3805 20 3875 18 3710CJJ81176_0111 - iron-sulfur cluster binding protein 66 1078 64 1204 56 1086 54 1217 49 7063 47 3938 54 7486 47 4274 51 6069 39 4122 45 6326 45 3985CJJ81176_0112 - hypothetical protein 35 490 34 604 33 558 28 607 25 1690 23 1502 26 1882 21 1477 25 2000 20 2169 23 2068 22 1921CJJ81176_0113 lctP L-lactate permease 102 2643 98 5516 89 2556 87 5389 69 8265 77 11737 73 8795 73 11366 69 7298 67 14133 66 7469 70 13075CJJ81176_0114 cdtC cytolethal distending toxin, subunit C 42 1209 40 1024 37 1215 35 1079 34 5040 34 6542 31 5352 32 7179 36 5254 26 6496 28 5528 26 7816CJJ81176_0115 cdtB cytolethal distending toxin, subunit B 51 2273 48 2404 46 2107 43 2202 40 6044 36 5483 38 5850 37 5445 43 7105 37 6508 36 7621 35 6200CJJ81176_0116 cdtA cytolethal distending toxin, subunit A 51 1495 45 1265 49 1272 40 1272 40 5891 35 6901 40 6053 39 7115 41 6051 31 5867 36 6313 32 6527CJJ81176_0117 - hypothetical protein 9 154 10 106 10 150 8 114 9 512 8 447 8 443 7 340 8 623 6 436 6 464 6 362CJJ81176_0118 cydA cytochrome d ubiquinol oxidase, subunit I 93 1650 83 1946 86 1686 76 2027 72 8346 63 8669 67 8627 68 9167 71 8579 65 9227 64 9073 62 9438CJJ81176_0119 cydB cytochrome d ubiquinol oxidase, subunit II 34 269 27 315 28 310 22 381 18 820 15 715 21 881 18 752 23 1072 14 1025 22 1105 14 1036CJJ81176_0120 - aspartate racemase, putative 39 314 36 288 30 357 24 283 23 987 23 975 25 1187 21 1046 23 1076 18 1922 22 1232 20 1943CJJ81176_0121 ung uracil-DNA glycosylase 56 2236 51 3345 48 2541 41 3490 43 6015 42 6602 40 5666 38 6544 45 6952 37 7326 40 6906 39 7099

CJJ81176_0122 aspA aspartate ammonia-lyase 62 693 26 118 51 699 19 114 61 12239 46 3112 61 12525 43 3152 58 7596 34 2444 56 8440 36 2283CJJ81176_0123 dcuA anaerobic C4-dicarboxylate transporter 58 1077 54 788 49 928 45 670 42 3227 34 3146 39 3226 38 3263 40 2864 32 2520 36 3145 35 2757CJJ81176_0124 - putative lipoprotein 65 1171 51 1307 57 1192 42 1178 43 3435 38 2864 44 3658 38 2686 45 3552 35 3524 38 3439 28 3289CJJ81176_0125 - putative lipoprotein 22 227 20 275 21 255 21 253 20 1268 16 849 17 1257 17 830 17 640 13 500 13 672 12 459CJJ81176_0126 - putative lipoprotein 16 147 16 148 15 172 12 151 13 590 11 538 12 662 11 537 14 554 9 513 10 527 10 529CJJ81176_0127 - hypothetical protein 73 919 66 869 68 938 49 924 55 3972 53 3534 57 4216 53 3421 58 3495 44 3054 52 3807 43 2774CJJ81176_0128 - hypothetical protein 54 737 45 724 46 699 40 704 36 2626 31 2747 35 2810 33 2681 40 3183 33 3884 38 3769 32 3176CJJ81176_0129 rplU 50S ribosomal protein L21 1 1 0 0 0 0 0 0 2 36 0 0 1 12 0 0 1 11 0 0 0 0 0 0CJJ81176_0130 rpmA 50S ribosomal protein L27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0131 obgE GTPase ObgE 3 5 1 2 3 5 1 2 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0CJJ81176_0132 proB gamma-glutamyl kinase 34 291 28 254 32 373 24 278 22 1359 20 1282 23 1371 23 1334 24 1308 18 1245 21 1432 20 1052CJJ81176_0133 fmt methionyl-tRNA formyltransferase 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0134 - biotin--protein ligase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0135 - ParA family chromosome partitioning ATPase 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0136 - ParB family chromosome partitioning protein 20 72 14 49 16 88 9 44 15 497 10 157 15 449 11 178 10 201 3 64 7 182 3 59CJJ81176_0137 - F0F1 ATP synthase subunit B' 1 1 0 0 0 0 0 0 1 11 0 0 0 0 1 9 0 0 0 0 0 0 0 0CJJ81176_0138 - F0F1 ATP synthase subunit B 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0139 atpH F0F1 ATP synthase subunit delta 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0140 atpA F0F1 ATP synthase subunit alpha 1 6 1 14 1 4 1 8 0 0 2 33 0 0 2 28 3 107 2 49 0 0 2 65CJJ81176_0141 atpG F0F1 ATP synthase subunit gamma 2 2 3 3 0 0 2 4 1 206 1 387 1 134 1 285 1 55 1 107 1 71 1 86CJJ81176_0142 atpD F0F1 ATP synthase subunit beta 2 2 1 2 0 0 1 2 0 0 0 0 0 0 1 10 0 0 0 0 0 0 0 0CJJ81176_0143 atpC F0F1 ATP synthase subunit epsilon 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0144 - MotA/TolQ/ExbB proton channel 7 11 2 8 1 8 1 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0145 - TonB system transport protein ExbD 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0146 - TonB domain-containing protein 1 1 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_0147 tolB translocation protein TolB 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0148 - peptidoglycan-associated lipoprotein Omp18 1 3 1 4 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 13CJJ81176_0149 - hypothetical protein 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0150 slyD FKBP-type peptidyl-prolyl cis-trans isomerase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0151 fabD malonyl CoA-acyl carrier protein transacylase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0152 mtnA adenosylhomocysteine nucleosidase 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0153 - PP-loop family protein 22 317 18 260 18 296 15 261 15 2372 12 1389 14 2078 11 1097 18 817 11 720 13 910 11 718CJJ81176_0154 - pyrazinamidase/nicotinamidase, putative 15 57 9 29 13 57 10 41 9 183 6 111 11 225 6 102 8 91 5 95 8 114 5 103CJJ81176_0155 - putative recombination protein RecO 9 43 8 22 7 59 4 18 8 285 6 64 9 296 6 62 9 313 4 58 8 264 4 78CJJ81176_0156 - putative metalloprotease 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0157 - hypothetical protein 53 1334 48 1204 49 1329 42 1107 44 6528 38 5424 40 6129 39 4915 44 6754 37 6130 41 6785 36 5830CJJ81176_0158 dusB tRNA-dihydrouridine synthase B 44 1314 40 1543 45 1422 36 1625 35 5369 33 5578 34 5680 33 5887 33 5821 27 8330 33 6222 27 8782CJJ81176_0159 - hypothetical protein 10 58 4 33 4 60 3 32 2 170 1 105 1 203 1 150 2 159 3 159 1 150 1 130CJJ81176_0160 - dnaK suppressor protein, putative 3 5 1 4 1 5 1 6 2 30 0 0 1 10 0 0 2 39 0 0 2 35 1 13CJJ81176_0161 - hypothetical protein 10 36 5 18 7 35 5 23 6 161 3 60 4 132 3 64 6 138 2 37 4 139 2 43CJJ81176_0162 accD acetyl-CoA carboxylase subunit beta 4 6 2 3 2 5 1 2 1 8 1 10 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0163 - inositol monophosphatase family protein 39 754 32 609 41 827 29 695 35 3422 28 3301 30 3526 30 3314 37 4367 27 3210 31 4570 26 3221CJJ81176_0164 - OMP85 family outer membrane protein 7 41 6 19 3 45 2 15 1 450 2 194 1 540 1 247 1 299 1 113 1 327 1 167CJJ81176_0165 tyrA prephenate dehydrogenase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0166 - M24/M37 family peptidase 31 482 14 1888 25 526 6 2056 22 3310 5 9058 22 3699 9 10566 20 3492 4 17843 16 4321 4 14386CJJ81176_0167 lpxC UDP-3-O-N-acetylglucosamine deacetylase 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0168 - hypothetical protein 1 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0169 thrB homoserine kinase 5 7 2 5 2 5 1 2 0 0 1 10 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0170 - hypothetical protein 5 10 2 2 1 1 0 0 2 55 2 16 0 0 2 33 0 0 2 49 1 18 0 0CJJ81176_0171 infB translation initiation factor IF-2 3 63 3 37 1 66 1 45 1 405 1 321 1 440 1 347 1 304 1 88 1 342 1 167CJJ81176_0172 rbfA ribosome-binding factor A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0173 - hypothetical protein 6 16 3 6 4 15 2 9 2 98 2 33 3 110 1 16 1 8 0 0 3 38 0 0CJJ81176_0174 - McrBC restriction endonuclease system 105 1431 80 1135 96 1574 72 1339 75 5719 70 4226 71 6106 64 4669 75 5512 49 4256 65 5723 52 4654CJJ81176_0175 - hypothetical protein 18 118 16 108 19 143 13 110 13 635 8 509 12 647 9 588 12 596 7 430 10 748 8 391CJJ81176_0176 - hypothetical protein 48 1013 41 850 46 1064 33 859 39 4717 30 4259 40 4849 31 4353 41 3706 26 3015 33 3480 30 3000CJJ81176_0177 - cation ABC transporter, permease protein 15 37 7 8 11 39 2 4 8 87 0 0 8 97 1 9 6 52 1 15 2 20 0 0CJJ81176_0178 - cation ABC transporter, ATP-binding protein 18 71 10 42 16 81 6 42 11 187 3 58 6 174 4 81 5 115 3 67 4 91 4 78CJJ81176_0179 - cation ABC transporter, cation-binding protein 10 25 3 5 11 36 0 0 8 113 0 0 7 112 0 0 4 85 1 12 5 122 3 40CJJ81176_0180 - methyl-accepting chemotaxis protein 52 736 48 960 48 812 38 943 38 2911 33 2532 35 2742 40 2502 41 2716 28 2700 33 2955 29 2601CJJ81176_0181 - hypothetical protein 59 1123 53 924 53 1124 41 938 47 4838 38 4115 41 4951 43 4389 47 4334 31 3420 41 4169 34 3718CJJ81176_0182 trxB thioredoxin-disulfide reductase 3 4 1 1 1 2 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0

CJJ81176_0183 trx thioredoxin 1 2 1 4 1 2 1 3 1 9 1 12 1 14 1 19 1 20 1 46 0 0 1 32CJJ81176_0184 - hypothetical protein 17 157 14 135 15 178 13 130 16 512 12 394 15 521 13 343 14 653 9 500 13 687 10 542CJJ81176_0185 hom homoserine dehydrogenase 5 44 6 44 3 52 3 36 3 176 2 85 4 167 2 98 4 134 2 55 3 117 3 108CJJ81176_0186 - aspartate aminotransferase 26 67 8 15 18 59 6 17 10 180 4 49 6 139 5 55 7 98 0 0 7 106 1 11CJJ81176_0187 - hypothetical protein 6 11 3 4 1 2 1 3 4 49 1 8 2 23 1 9 2 27 0 0 1 20 2 32CJJ81176_0188 - hypothetical protein 3 3 0 0 2 3 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0189 - RNA methyltransferase 9 16 0 0 4 10 0 0 4 96 1 8 3 97 1 7 3 52 0 0 2 30 0 0CJJ81176_0190 - tetrapyrrole methylase family protein 25 77 10 16 18 79 5 11 12 278 5 99 12 294 6 114 10 214 2 27 7 259 2 30CJJ81176_0191 rpmE 50S ribosomal protein L31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0192 - 16S ribosomal RNA methyltransferase RsmE 6 5 1 1 1 2 0 0 0 0 0 0 0 0 1 7 2 17 0 0 1 18 0 0CJJ81176_0193 - hypothetical protein 6 10 4 16 0 0 2 5 2 19 1 8 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0194 - cytochrome c family protein 11 487 9 78 9 85 4 29 5 393 5 340 6 308 6 331 6 590 3 436 5 568 3 453CJJ81176_0195 - 6-pyruvoyl tetrahydrobiopterin synthase-like 10 40 8 26 8 44 5 28 7 170 3 74 7 221 4 100 3 72 2 24 3 84 3 57CJJ81176_0196 - radical SAM domain-containing protein 8 21 2 15 4 22 2 12 5 153 3 84 4 130 3 53 3 87 2 165 2 56 2 81CJJ81176_0197 moaA molybdenum cofactor biosynthesis protein A 13 21 5 6 7 22 1 3 5 55 0 0 5 72 0 0 3 38 0 0 4 53 0 0CJJ81176_0198 - hypothetical protein 15 59 2 2 9 62 2 4 10 735 1 14 8 730 4 18 8 162 0 0 5 132 1 6CJJ81176_0199 - hypothetical protein 5 14 0 0 4 15 0 0 3 62 1 1 2 37 0 0 2 20 0 0 1 10 0 0CJJ81176_0200 ubiA prenyltransferase 3 10 3 3 2 7 1 2 1 74 1 8 2 43 1 9 1 19 0 0 1 13 0 0

CJJ81176_0201 miaAtRNA delta(2)-isopentenylpyrophosphate transferase 1 7 1 9 2 5 1 8 1 13 0 0 1 10 0 0 0 0 0 0 0 0 0 0

CJJ81176_0202 - hypothetical protein 41 656 29 797 30 691 23 808 20 2174 20 1916 20 2086 21 1774 21 1626 16 1660 19 1440 13 1265CJJ81176_0204 - hypothetical protein 6 57 5 65 5 60 3 59 2 172 2 126 4 188 2 135 2 115 1 46 2 94 2 57CJJ81176_0205 sodB superoxide dismutase, Fe 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0206 - hypothetical protein 9 248 5 274 7 277 4 273 5 1333 3 723 4 1423 3 889 5 751 3 445 4 694 3 491CJJ81176_0207 - hypothetical protein 22 509 20 449 20 511 18 390 18 1936 15 1391 16 1880 16 1306 16 1736 14 2017 17 1946 14 1667CJJ81176_0208 - saccharopine dehydrogenase 3 11 1 8 1 13 1 9 1 74 1 25 1 72 1 31 1 33 1 18 1 58 1 16CJJ81176_0209 - iron ABC transporter, ATP binding subunit 34 358 31 235 29 377 21 245 20 2044 14 1459 17 1936 12 1416 20 1390 14 955 16 1566 13 909CJJ81176_0210 - iron ABC transporter, permease protein 88 825 78 612 74 714 49 566 51 3176 36 2934 49 3408 43 2830 62 3308 40 2966 46 3069 37 3176CJJ81176_0211 - iron ABC transporter, iron-binding protein 54 476 46 457 44 526 38 466 38 2728 33 2339 39 2622 35 2434 42 2574 25 2932 36 2689 28 3408CJJ81176_0212 - hypothetical protein 4 10 3 12 3 10 3 13 3 28 1 10 2 33 1 14 2 16 0 0 1 13 2 35CJJ81176_0213 - putative transporter 72 2347 62 2350 70 2258 59 2331 55 12736 52 12042 58 12484 55 11371 58 13472 50 11820 53 13868 50 10692CJJ81176_0214 - transporter, putative 58 277 29 132 50 300 21 114 39 1102 22 420 41 1193 26 461 39 1246 15 467 34 1219 18 486CJJ81176_0215 - Ser/Thr protein phosphatase family protein 63 589 53 442 57 666 44 476 50 2938 38 2279 46 2864 43 2343 53 3232 38 2453 48 3280 41 2555CJJ81176_0216 - PhnA domain-containing protein 8 92 5 66 6 85 5 50 4 868 2 558 5 697 3 437 5 489 2 247 4 449 3 146CJJ81176_0217 - TerC family integral membrane protein 14 161 10 205 12 186 8 190 12 577 11 297 11 505 11 366 13 423 11 415 13 545 10 410CJJ81176_0218 purN phosphoribosylglycinamide formyltransferase 31 3482 28 2880 28 2318 26 2881 32 13779 29 11667 28 13489 30 11246 33 8299 28 9059 30 8779 27 9295CJJ81176_0219 - hypothetical protein 83 4415 78 5133 78 3701 69 5143 69 17471 63 16452 66 17811 67 18012 62 13783 55 15262 60 15974 51 14550CJJ81176_0220 - hypothetical protein 38 541 36 488 39 579 31 493 31 2951 26 1955 30 2864 26 1831 30 2774 20 2923 24 2669 20 2884CJJ81176_0221 - Mg chelatase-related protein 81 1746 68 1402 71 1825 55 1371 58 7182 52 7231 61 7579 52 6989 59 6658 41 5507 51 7261 44 5534CJJ81176_0222 def peptide deformylase 2 9 2 10 2 14 1 7 1 26 1 23 1 17 1 21 1 19 1 34 1 25 1 22CJJ81176_0223 clpP ATP-dependent Clp protease 2 1 2 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0224 tig trigger factor 2 2 1 6 1 2 1 4 1 8 1 10 0 0 0 0 1 8 0 0 0 0 0 0CJJ81176_0225 folE GTP cyclohydrolase I 3 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0226 fliI flagellum-specific ATP synthase 75 461 1 1 67 493 0 0 71 6282 0 0 71 6067 0 0 66 3896 1 21 55 3847 1 27CJJ81176_0227 purF amidophosphoribosyltransferase 93 2670 89 3085 89 2801 77 3222 75 11286 67 10754 75 11853 74 10540 76 11269 64 13636 68 11423 59 13115CJJ81176_0228 dapB dihydrodipicolinate reductase 4 7 1 9 2 10 1 7 2 25 1 8 2 27 1 16 3 39 1 12 2 23 1 13CJJ81176_0229 - recombination factor protein RarA 81 1408 67 1212 74 1386 62 1192 59 6350 49 8455 53 6307 52 7201 56 9242 44 9831 51 9261 44 8380CJJ81176_0230 - hypothetical protein 76 801 66 747 61 921 52 792 46 3240 41 2811 43 3302 41 2593 52 3687 36 2947 45 3634 35 2844CJJ81176_0231 - hypothetical protein 27 6150 23 3777 26 1152 21 1084 19 2942 19 2671 18 3600 18 4876 18 2027 17 2188 17 1338 16 4125CJJ81176_0232 - hypothetical protein 31 644 26 652 31 790 21 679 21 2131 20 2510 20 2289 20 2709 23 2535 18 3497 20 2732 19 3912CJJ81176_0233 - hypothetical protein 7 74 5 58 5 62 5 74 4 270 4 194 4 283 4 157 7 516 7 339 6 398 7 329CJJ81176_0234 - hypothetical protein 7 109 6 93 6 109 6 93 5 363 5 260 5 389 5 224 4 375 2 250 3 456 2 221CJJ81176_0235 - citrate transporter, authentic frameshift 91 2988 82 3327 81 3199 69 3176 68 12919 69 12903 69 12928 65 12217 71 22654 50 26252 66 22062 58 23573CJJ81176_0236 - OPT family oligopeptide transporter 105 2606 92 2598 95 2809 81 2662 73 10639 68 9149 76 11009 71 9099 84 11772 62 11317 73 11724 66 10555CJJ81176_0237 - undecaprenol kinase, putative 0 0 0 0 0 0 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0238 thrS threonyl-tRNA synthetase 1 2 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0239 infC translation initiation factor IF-3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0240 -D12 class N6 adenine-specific DNA methyltransferase 26 160 7 16 21 176 5 12 13 420 1 8 13 428 0 0 23 593 2 27 20 550 1 19

CJJ81176_0241 - hypothetical protein 9 598 8 630 9 690 7 633 7 4006 8 4311 7 3819 7 3861 7 4608 8 4537 7 4286 8 4177CJJ81176_0242 - hypothetical protein 26 632 22 490 24 576 21 510 24 2596 22 2757 25 2591 22 2760 24 3243 19 2496 23 3239 21 2444

CJJ81176_0243 - hypothetical protein 8 101 7 79 7 121 6 80 7 563 6 369 5 579 5 381 6 423 5 363 5 446 5 367CJJ81176_0244 - hypothetical protein 28 291 26 214 26 273 20 191 20 783 20 715 19 819 17 688 21 1161 18 1047 23 1338 18 1166CJJ81176_0245 - hypothetical protein 18 1319 11 1771 15 1222 11 1593 10 2537 8 3363 8 2796 8 3623 10 2280 5 2368 8 2489 6 2299CJJ81176_0246 - pathogenicity domain-containing protein 9 29 7 16 7 32 6 23 6 127 2 49 5 105 6 76 8 231 6 122 6 205 6 148CJJ81176_0247 - hypothetical protein 13 181 12 158 11 218 9 140 10 679 9 470 11 678 9 485 10 516 8 482 9 575 9 510CJJ81176_0248 - pathogenicity protein, putative, truncation 10 237 8 220 10 298 8 254 9 909 7 878 8 897 10 830 8 1221 8 1654 9 1237 8 1721

CJJ81176_0249 argCN-acetyl-gamma-glutamyl-phosphate reductase 37 940 32 833 31 856 24 832 26 4475 24 5182 26 4520 24 4605 27 5552 22 5288 25 5502 23 5172

CJJ81176_0250 - acetyltransferase 26 1358 23 1114 22 1207 20 1076 19 4374 20 4251 17 4694 17 4429 22 3909 12 4009 18 3776 17 4244CJJ81176_0251 argB acetylglutamate kinase 45 949 41 1046 37 1031 34 1051 34 3989 30 3511 30 4090 31 3354 32 4543 26 3304 30 4286 27 2946CJJ81176_0252 argD acetylornithine aminotransferase 70 1319 65 1529 66 1391 63 1470 60 7233 56 5300 57 7482 56 5559 62 8472 52 6069 57 8483 49 6103CJJ81176_0253 pcm protein-L-isoaspartate O-methyltransferase 30 171 23 83 27 163 17 86 24 650 14 340 21 608 17 316 20 598 11 330 20 692 15 318CJJ81176_0254 - hexapaptide repeat-containing transferase 23 188 14 120 21 195 10 122 12 760 9 542 12 744 12 635 14 732 8 708 13 720 11 704CJJ81176_0255 - nicotinate phosphoribosyltransferase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0256 nrdF ribonucleotide-diphosphate reductase subunit 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0257 - hypothetical protein 14 22 5 7 8 18 1 3 7 134 2 17 7 122 3 31 8 123 1 18 5 96 2 24CJJ81176_0258 pyrE orotate phosphoribosyltransferase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0259 frr ribosome recycling factor 5 8 2 2 1 1 1 2 0 0 0 0 1 8 0 0 0 0 0 0 0 0 1 16CJJ81176_0260 secG preprotein translocase subunit SecG 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0261 - hypothetical protein 3 3 0 0 1 2 0 0 1 8 0 0 0 0 0 0 1 9 0 0 0 0 0 0CJJ81176_0262 cynT carbonic anhydrase 29 412 24 371 26 319 20 365 16 2189 14 1041 16 2450 17 1306 12 1797 9 851 13 2076 10 890CJJ81176_0263 - mechanosensitive ion channel family protein 60 288 42 270 48 321 29 248 28 650 19 338 28 560 16 293 32 494 14 311 23 476 16 299CJJ81176_0264 iscU NifU family protein 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0265 iscS cysteine desulfurase, putative 4 3 4 5 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0266 - hypothetical protein 22 460 22 437 22 545 22 450 20 1924 16 1580 18 1840 18 1496 18 1984 16 1202 18 1990 18 1306CJJ81176_0267 - hypothetical protein 53 476 43 373 45 545 28 381 29 1906 26 1403 27 1824 27 1258 34 1909 27 1373 30 1827 25 1152CJJ81176_0268 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0269 rpmI 50S ribosomal protein L35 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0270 rplT 50S ribosomal protein L20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0271 - MCP-domain-containing signal transduction 9 35 8 20 8 36 8 20 6 195 4 87 4 184 4 105 8 233 5 113 6 193 4 105CJJ81176_0272 - MCP-domain-containing signal transduction 7 23 4 20 5 25 3 29 2 98 2 52 3 118 2 62 2 33 0 0 1 25 1 13CJJ81176_0273 - MCP-domain-containing signal transduction 17 103 11 90 11 105 9 80 13 543 12 359 13 596 11 407 11 615 7 381 10 591 6 340CJJ81176_0274 - hypothetical protein 28 103 19 60 24 107 15 63 12 308 9 181 12 318 11 160 15 386 7 198 11 322 6 135CJJ81176_0275 - hypothetical protein 25 211 20 162 23 231 11 194 19 701 15 447 16 651 13 407 17 718 12 418 16 796 11 410CJJ81176_0276 - hypothetical protein 17 346 15 261 15 339 13 289 18 2274 13 2192 17 2039 15 2091 17 1871 15 1626 16 1901 13 1279CJJ81176_0277 - major facilitator superfamily protein 85 955 67 748 68 893 53 745 58 3872 47 2897 59 4107 48 3206 60 3756 39 2972 49 4075 40 3130CJJ81176_0278 - hypothetical protein 5 91 6 154 5 103 5 136 4 389 4 433 5 343 4 336 5 434 4 494 4 418 4 432CJJ81176_0279 moaC molybdenum cofactor biosynthesis protein 22 128 12 43 20 151 9 40 16 474 5 72 18 457 4 45 15 340 2 40 12 281 3 59CJJ81176_0280 - hypothetical protein 9 52 8 38 7 64 5 30 6 117 6 101 4 172 4 83 5 142 3 52 4 190 4 92CJJ81176_0281 - hypothetical protein 41 494 36 332 41 569 27 351 31 2463 25 1517 30 2558 28 1579 34 2297 25 1919 29 2175 23 1702CJJ81176_0282 xth exodeoxyribonuclease III 20 109 15 67 20 118 9 66 17 592 12 303 17 558 10 223 15 381 8 253 13 398 8 229CJJ81176_0283 EptC lipid A phosphoethanolamine transferase 59 361 30 187 51 344 20 143 27 1183 17 431 27 1108 14 361 38 773 5 311 28 748 11 351CJJ81176_0284 dgkA diacylglycerol kinase 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0285 - hypothetical protein 3 12 2 5 3 12 1 3 4 64 3 87 4 68 3 109 5 60 2 61 3 53 2 49CJJ81176_0286 pyrC dihydroorotase 3 6 2 3 1 2 1 2 1 19 0 0 1 12 0 0 2 25 0 0 1 10 0 0CJJ81176_0287 - hypothetical protein 15 194 14 115 14 207 11 113 11 991 8 779 12 988 9 875 13 1013 10 766 13 1009 9 952CJJ81176_0288 - hypothetical protein 41 529 43 417 33 567 31 419 32 2942 26 2275 28 2907 24 2446 31 1649 19 2719 25 1723 21 2838CJJ81176_0289 - methyl-accepting chemotaxis protein 52 505 49 774 47 546 43 747 40 2221 37 2986 33 2184 35 2686 36 1542 27 2508 28 1417 30 2531CJJ81176_0290 zupT zinc transporter ZupT 44 2764 41 2272 40 2406 36 2250 32 13900 32 11663 35 15056 33 11927 37 16356 30 13016 35 17660 33 14842CJJ81176_0291 - biotin sulfoxide reductase 116 3816 100 2866 105 3167 93 2872 91 13095 80 12316 88 13472 86 12709 90 11624 78 9968 81 13078 75 9430CJJ81176_0292 - cytochrome C-type haem-binding protein 30 221 25 145 26 228 20 127 20 718 13 338 19 738 18 416 20 781 14 659 17 981 16 607CJJ81176_0293 - hypothetical protein 24 117 15 109 21 121 8 95 12 318 3 286 11 279 3 209 13 482 3 647 9 466 4 483CJJ81176_0294 - hypothetical protein 30 349 16 140 27 424 10 144 24 1510 9 274 22 1456 10 262 20 1091 4 156 18 978 4 140CJJ81176_0295 - SPFH domain-containing protein 29 102 7 12 19 120 4 12 20 437 1 8 15 486 1 7 19 409 0 0 10 312 1 11CJJ81176_0296 ilvE branched-chain amino acid aminotransferase 23 88 9 14 17 103 5 10 15 480 4 93 13 505 6 97 15 387 4 64 13 436 5 97CJJ81176_0297 - 4-oxalocrotonate tautomerase family protein 10 49 11 57 11 65 8 65 7 251 6 216 7 254 7 202 6 529 5 735 7 611 5 478CJJ81176_0298 - anti-oxidant AhpCTSA family protein 16 160 14 126 14 171 12 135 13 722 10 560 13 705 11 599 17 662 9 726 13 674 11 785CJJ81176_0299 - hypothetical protein 47 610 38 493 42 652 38 516 36 2790 33 2223 36 3005 31 2426 37 3597 30 2304 31 3949 29 2256CJJ81176_0300 fabZ (3R)-hydroxymyristoyl-ACP dehydratase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0301 lpxA UDP-N-acetylglucosamine acyltransferase 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0302 clpX ATP-dependent protease ATP-binding subunit 3 38 2 15 1 32 2 13 1 142 1 76 1 91 1 57 1 94 1 58 1 73 1 59

CJJ81176_0303 mreB rod shape-determining protein MreB 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0304 mreC rod shape-determining protein MreC 3 8 3 6 2 3 2 6 0 0 1 14 1 10 2 26 0 0 1 15 0 0 1 22CJJ81176_0305 carB carbamoyl phosphate synthase large subunit 19 20 0 0 8 13 0 0 6 60 0 0 7 77 1 7 4 33 0 0 2 23 0 0CJJ81176_0306 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0307 tal transaldolase 30 112 20 81 23 115 17 80 13 885 10 532 16 997 10 600 13 466 6 293 11 423 7 335CJJ81176_0308 serB phosphoserine phosphatase SerB 17 66 12 35 17 65 7 27 13 408 9 159 15 407 9 179 12 253 6 128 10 228 7 186CJJ81176_0309 cheW purine-binding chemotaxis protein CheW 17 91 3 5 13 75 1 2 14 319 1 8 15 310 1 7 14 341 0 0 12 329 0 0CJJ81176_0310 cheA chemotaxis protein CheA 20 120 10 53 16 121 8 56 16 803 6 291 16 771 8 319 11 302 3 116 12 342 3 108CJJ81176_0311 cheV chemotaxis protein CheV 2 4 0 0 2 4 0 0 2 26 2 21 1 21 1 17 1 19 2 52 1 53 2 51CJJ81176_0312 - hypothetical protein 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0313 greA transcription elongation factor GreA 1 1 2 2 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0314 lpxB ipid-A-disaccharide synthase 5 45 4 45 5 49 4 67 4 155 3 196 3 130 3 271 4 190 3 400 4 220 4 453CJJ81176_0315 PEB3 major antigenic peptide PEB3 44 529 37 401 42 498 33 367 33 1996 26 2044 36 2144 27 1855 35 2123 20 1873 32 2088 26 1818CJJ81176_0316 - glycerol-3-phosphate transporter 74 2323 63 1818 69 2278 59 1730 59 10534 56 10909 58 11020 59 11780 64 8845 55 9129 58 9078 55 10495CJJ81176_0317 surE stationary phase survival protein SurE 27 520 24 687 24 554 19 617 14 2149 13 3272 14 2492 13 3568 22 2049 12 2276 16 2420 13 2396CJJ81176_0318 - thiF family protein 20 218 17 169 17 212 12 152 9 429 7 291 11 463 8 247 12 541 6 256 9 560 7 254CJJ81176_0319 panD aspartate alpha-decarboxylase 21 425 19 253 21 463 18 262 16 1285 15 903 19 1392 14 844 16 1729 12 1425 18 2071 15 1360CJJ81176_0320 panC pantoate--beta-alanine ligase 58 1266 44 830 48 1268 39 880 40 4823 33 4682 38 4913 35 4802 39 5133 31 4717 35 5444 28 4266

CJJ81176_0321 panB3-methyl-2-oxobutanoate hydroxymethyltransferase 52 635 48 600 47 750 43 620 39 2985 35 2893 34 3042 38 2888 40 3580 32 3195 39 3997 29 2668

CJJ81176_0322 modC molybdenum ABC transporter, ATP-binding 32 378 26 412 30 403 20 423 23 3070 19 3093 21 3304 19 3107 24 1388 18 1159 24 1318 15 1244CJJ81176_0323 modB molybdenum ABC transporter, permease 28 290 25 177 27 305 20 180 19 892 19 666 20 949 21 664 21 1265 17 793 21 1173 17 766CJJ81176_0324 - TOBE domain-containing protein 12 72 11 45 11 92 10 57 8 325 7 130 9 329 9 169 8 172 4 125 8 198 5 121CJJ81176_0325 modA molybdenum ABC transporter, periplasmic 30 765 27 698 27 820 22 663 26 2499 19 1589 25 2612 22 1665 27 3004 19 2551 23 2988 17 3060CJJ81176_0326 bioC biotin biosynthesis protein BioC 11 30 4 15 7 34 1 13 2 49 1 43 3 64 2 53 3 102 2 95 2 94 1 111CJJ81176_0327 - hypothetical protein 14 47 2 12 7 40 4 15 3 130 1 23 3 128 1 17 3 107 1 27 2 122 1 13CJJ81176_0328 bioF 8-amino-7-oxononanoate synthase 33 89 15 29 22 95 9 24 7 112 0 0 4 108 1 7 5 79 0 0 4 66 0 0

CJJ81176_0329 bioAadenosylmethionine--8-amino-7-oxononanoate transaminase 10 26 1 3 11 24 1 2 4 147 1 10 6 190 2 17 3 60 0 0 5 71 1 11

CJJ81176_0330 bioD dethiobiotin synthetase 3 4 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 24 0 0 0 0CJJ81176_0331 - SMR family multidrug efflux pump 19 350 14 485 15 393 11 476 14 1335 10 1173 12 1456 10 1166 15 1495 10 1373 13 1272 10 1600CJJ81176_0332 - SMR family multidrug efflux pump 31 310 28 247 30 319 22 241 26 2361 25 1710 25 2399 25 1630 30 5073 16 2227 26 4412 17 1595

CJJ81176_0333 rplY50S ribosomal protein L25/general stress protein Ctc 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0334 pth peptidyl-tRNA hydrolase 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0335 - hypothetical protein 8 8 2 2 2 3 1 2 2 40 3 31 2 33 1 10 1 8 1 21 0 0 2 24CJJ81176_0336 lysA diaminopimelate decarboxylase 13 25 2 3 5 20 0 0 5 119 1 62 3 120 1 91 3 63 1 195 2 71 1 200CJJ81176_0337 - HAD family hydrolase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0338 pheA chorismate mutase/prephenate dehydratase 3 9 1 3 1 7 0 0 2 42 2 17 2 50 2 22 2 25 2 37 1 20 1 13CJJ81176_0339 hisC histidinol-phosphate aminotransferase 3 4 2 3 2 3 1 2 0 0 1 12 1 8 1 12 1 8 1 15 0 0 1 13CJJ81176_0340 fliF flagellar MS-ring protein 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0341 fliG flagellar motor switch protein G 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0342 fliH flagellar assembly protein H 4 6 2 9 2 7 1 5 1 9 0 0 0 0 0 0 0 0 0 0 1 13 0 0CJJ81176_0343 dxs 1-deoxy-D-xylulose-5-phosphate synthase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 10 0 0 0 0 0 0 1 11CJJ81176_0344 - FUR family transcriptional regulator 3 7 2 3 2 6 0 0 1 23 0 0 1 25 0 0 0 0 0 0 0 0 0 0CJJ81176_0345 - hypothetical protein 41 180 25 112 35 192 17 103 23 924 17 484 25 800 23 516 24 845 12 351 20 692 12 326

CJJ81176_0346 ubiEubiquinone/menaquinone biosynthesis methyltransferase 3 3 0 0 0 0 0 0 1 9 0 0 1 8 0 0 0 0 0 0 0 0 0 0

CJJ81176_0347 xseA exodeoxyribonuclease VII large subunit 38 336 28 186 35 339 24 184 28 1197 22 824 28 1243 20 844 27 1182 15 891 27 1105 21 1147CJJ81176_0348 serC phosphoserine aminotransferase 4 15 1 4 1 2 0 0 0 0 0 0 1 14 0 0 1 9 0 0 1 18 0 0CJJ81176_0349 - endoribonuclease L-PSP family protein 6 17 5 19 5 22 3 15 4 68 1 8 3 77 2 21 5 69 1 21 2 91 1 32CJJ81176_0350 fabH 3-oxoacyl-(acyl carrier protein) synthase III 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0351 plsX putative glycerol-3-phosphate acyltransferase 4 7 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0352 rpmF 50S ribosomal protein L32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0353 - hypothetical protein 1 1 2 2 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0354 ndk nucleoside diphosphate kinase 1 7 1 1 1 2 1 3 1 11 1 10 0 0 1 12 1 8 0 0 0 0 0 0CJJ81176_0355 - ferredoxin, 4Fe-4S 18 1269 15 1336 17 1341 15 1476 15 6263 14 6330 15 6675 14 6610 15 7811 13 8220 14 8217 13 7592CJJ81176_0356 - anti-oxidant AhpCTSA family protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0CJJ81176_0357 flhB flagellar biosynthesis protein FlhB 49 254 2 3 44 285 1 2 45 3104 1 8 43 3015 1 9 43 1753 0 0 32 1599 0 0CJJ81176_0358 motB flagellar motor protein MotB 31 222 3 6 29 265 3 6 28 1567 1 10 27 1551 1 16 23 1160 1 18 21 1163 1 11CJJ81176_0359 motA flagellar motor protein MotA 36 230 1 1 34 261 1 4 28 1448 0 0 25 1342 0 0 30 1589 0 0 22 1802 0 0

CJJ81176_0360 polA DNA polymerase I 13 24 8 24 3 15 4 21 3 59 2 54 3 52 3 60 2 31 2 37 1 10 2 57CJJ81176_0361 - major facilitator family transporter 3 22 3 17 2 21 3 21 1 60 1 31 1 41 1 28 2 36 1 37 1 51 2 43CJJ81176_0362 - inner membrane metabolite transport protein 4 39 5 51 4 49 4 56 3 178 3 130 4 236 3 174 4 142 3 58 3 152 2 70CJJ81176_0363 - inner membrane metabolite transport protein 39 890 30 712 33 909 29 715 27 4494 19 4134 26 4727 22 4331 32 5649 24 6176 28 5799 24 7279

CJJ81176_0364 -inosine-uridine preferring nucleoside hydrolase 48 551 37 392 42 530 33 387 32 1822 27 1646 32 1861 29 1634 35 2134 26 1876 30 2438 27 2007

CJJ81176_0365 - hypothetical protein 22 214 17 125 19 189 13 141 13 439 12 233 14 461 9 186 12 360 6 180 12 464 7 194CJJ81176_0366 uvrA excinuclease ABC subunit A 57 227 22 60 45 218 11 52 33 550 6 153 25 534 6 138 28 563 5 269 17 456 5 224CJJ81176_0367 - hypothetical protein 6 14 3 4 3 14 2 5 4 64 2 16 3 27 2 19 3 30 2 31 1 13 1 16CJJ81176_0368 - hypothetical protein 17 617 16 492 17 682 16 500 16 2261 16 2125 15 2188 15 1894 16 2889 15 2127 17 2580 14 1783CJJ81176_0369 trpE anthranilate synthase component I 42 297 34 286 34 336 24 289 21 1427 22 1412 26 1425 18 1291 22 1245 15 1105 21 1186 17 1085CJJ81176_0370 trpD anthranilate synthase component II 59 369 49 352 50 420 37 347 37 1469 30 1253 36 1613 33 1206 37 1858 27 1492 29 1812 27 1155CJJ81176_0371 trpF N-(5'phosphoribosyl)anthranilate isomerase 14 72 12 60 11 68 7 48 8 354 4 111 6 273 6 147 11 290 7 241 9 256 7 194CJJ81176_0372 trpB tryptophan synthase subunit beta 34 521 27 438 30 558 18 415 25 2064 22 1436 21 2146 21 1563 24 2744 21 1767 24 2953 20 2029CJJ81176_0373 trpA tryptophan synthase subunit alpha 42 395 31 228 35 397 25 215 26 913 21 595 23 885 25 678 24 1004 14 854 20 1034 18 971CJJ81176_0374 cheC CHEC-like superfamily protein 6 8 1 1 4 11 0 0 3 64 0 0 3 45 0 0 2 28 0 0 2 43 0 0CJJ81176_0375 fliN flagellar motor switch protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 17 0 0 0 0 0 0 0 0CJJ81176_0376 fliO hypothetical protein 33 87 21 45 25 98 10 38 16 433 12 272 18 414 10 207 24 505 5 207 16 393 4 167CJJ81176_0377 - Ppx/GppA family phosphatase 5 6 3 7 1 3 1 7 1 13 1 25 1 10 2 24 2 19 1 37 1 13 1 22CJJ81176_0378 fdxA ferredoxin, 4Fe-4S 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0379 - DNA-binding response regulator 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0380 - FolB domain-containing protein 3 3 1 3 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0381 plsY putative glycerol-3-phosphate acyltransferase 6 6 1 2 0 0 1 2 1 234 3 117 1 31 3 276 1 35 2 204 1 66 3 65CJJ81176_0382 ccpA-2 cytochrome c551 peroxidase 25 258 19 222 21 266 19 222 13 1185 10 1030 19 1129 13 906 17 1242 12 1315 14 983 11 1387CJJ81176_0383 glmM phosphoglucosamine mutase 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0CJJ81176_0384 lspA lipoprotein signal peptidase 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0385 - hypothetical protein 3 3 2 2 1 1 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0CJJ81176_0386 - coproporphyrinogen III oxidase 53 329 38 157 46 320 31 162 33 1168 23 552 28 1146 25 568 35 1418 22 815 23 1308 19 761CJJ81176_0387 cheX Chemotaxis phosphatase CheX 3 6 0 0 3 8 0 0 3 104 0 0 3 108 2 17 2 120 0 0 2 165 0 0CJJ81176_0388 cmeC RND efflux system, outer membrane 2 1 1 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0389 cmeB RND efflux system, inner membrane 6 6 4 5 0 0 1 3 1 15 0 0 0 0 0 0 1 6 0 0 1 10 1 13CJJ81176_0390 cmeA RND efflux system, membrane fusion protein 1 1 1 2 1 2 1 4 0 0 2 17 1 10 2 21 1 19 1 27 1 13 2 38CJJ81176_0391 - TetR family transcriptional regulator 1 1 1 1 0 0 0 0 2 34 1 17 0 0 0 0 1 9 2 46 0 0 1 11CJJ81176_0392 - iron-sulfur cluster-binding protein 13 21 6 11 3 9 4 9 2 76 3 64 2 99 3 67 2 47 2 49 3 61 2 59CJJ81176_0393 rpsU 30S ribosomal protein S21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0394 - colicin E1 immunity protein 10 221 6 165 8 239 7 156 8 832 7 517 7 821 8 568 7 530 7 513 7 509 7 696CJJ81176_0395 - hypothetical protein 9 52 5 12 6 37 4 13 7 108 5 72 5 85 4 53 5 83 2 49 4 86 2 59CJJ81176_0396 - glutathionylspermidine synthase family 14 33 10 17 13 38 4 13 7 136 3 43 7 153 4 47 11 157 3 40 6 114 6 86CJJ81176_0397 - 2-hydroxyacid dehydrogenase 4 6 3 3 5 9 0 0 5 47 0 0 4 41 0 0 7 82 0 0 2 43 0 0CJJ81176_0398 - putative nucleotide-binding protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0399 - putative lipoprotein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0400 - hypothetical protein 5 8 1 2 0 0 0 0 1 11 1 8 2 17 0 0 0 0 0 0 0 0 0 0CJJ81176_0401 - ATPase, AAA family protein 8 16 5 9 5 12 4 10 5 51 0 0 4 50 2 14 6 121 1 21 5 119 2 30CJJ81176_0402 - hypothetical protein 24 84 16 54 20 85 12 46 13 418 9 229 9 300 10 188 14 337 6 204 11 327 7 240CJJ81176_0403 - putative sulfite oxidase subunit YedY 48 535 38 432 42 598 35 431 37 2369 30 1634 35 2283 35 1727 37 2458 29 1971 31 2545 26 1872CJJ81176_0404 pyrF orotidine 5'-phosphate decarboxylase 5 6 1 1 2 5 0 0 2 55 0 0 2 52 0 0 1 6 0 0 2 25 0 0CJJ81176_0405 nusB transcription antitermination protein NusB 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0406 ribH 6,7-dimethyl-8-ribityllumazine synthase 1 1 1 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0407 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase 2 18 1 12 2 17 1 15 1 17 0 0 1 23 1 12 2 42 1 34 1 25 1 22CJJ81176_0408 - integral membrane protein 55 1018 38 546 45 1050 32 551 37 3414 28 2118 37 3811 33 2105 36 3172 21 1309 30 3427 16 1157CJJ81176_0409 engA GTP-binding protein EngA 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0410 aroK shikimate kinase 1 2 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0411 trpS tryptophanyl-tRNA synthetase 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0412 serS seryl-tRNA synthetase 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0413 - TPR domain-containing protein 132 1007 12 15 116 1180 4 6 110 10242 2 52 107 10329 6 69 99 7473 2 24 93 7365 4 89CJJ81176_0414 - hypothetical protein 24 299 18 299 19 348 18 329 20 1779 18 1951 20 1731 17 1877 20 1847 13 1846 18 1924 14 1684CJJ81176_0415 pyk pyruvate kinase 32 73 6 21 18 68 3 12 13 335 3 155 9 265 3 126 6 260 2 134 7 284 2 103CJJ81176_0416 - malate:quinone oxidoreductase, putative 8 34 4 22 4 28 3 21 1 34 1 8 2 60 2 28 2 87 1 43 1 48 1 49CJJ81176_0417 - pantothenate kinase 2 5 2 3 2 6 1 2 1 13 2 19 1 17 1 22 1 31 1 12 1 23 1 16CJJ81176_0418 - tram-like protein 9 23 4 5 7 25 1 2 5 132 3 41 6 136 5 55 5 312 3 116 5 317 4 140CJJ81176_0419 - putative lipoprotein 7 12 6 8 2 5 3 15 1 8 1 8 0 0 0 0 0 0 1 24 0 0 1 24

CJJ81176_0420 - hypothetical protein 3 4 3 3 1 2 1 3 1 13 1 23 1 21 2 29 1 11 0 0 0 0 1 11CJJ81176_0421 gatC aspartyl/glutamyl-tRNA amidotransferase 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0422 - cvpA family protein 2 1 1 1 0 0 0 0 0 0 1 14 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0423 fur ferric uptake regulation protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0424 lysS lysyl-tRNA synthetase 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0425 glyA serine hydroxymethyltransferase 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0427 - hypothetical protein 8 47 5 18 8 50 3 20 8 140 3 72 5 108 3 38 8 134 3 40 3 109 4 54CJJ81176_0428 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_0429 aroE shikimate 5-dehydrogenase 0 0 0 0 0 0 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0430 - putative lipoprotein 29 60 14 25 22 58 7 14 8 178 4 124 8 190 4 119 15 370 6 168 15 416 6 192CJJ81176_0431 lgt prolipoprotein diacylglyceryl transferase 3 3 2 2 0 0 0 0 1 13 0 0 0 0 0 0 1 6 0 0 1 18 0 0CJJ81176_0432 frdC fumarate reductase cytochrome b-556 subunit 3 4 1 2 2 2 1 2 3 34 1 8 2 25 0 0 2 25 0 0 1 13 0 0CJJ81176_0433 frdA fumarate reductase flavoprotein subunit 6 10 0 0 6 13 0 0 5 164 0 0 6 136 0 0 5 46 0 0 4 43 0 0CJJ81176_0434 frdB fumarate reductase iron-sulfur subunit 2 2 0 0 0 0 0 0 2 19 0 0 1 10 0 0 0 0 0 0 1 10 0 0CJJ81176_0435 - GTP-binding protein 40 323 35 351 32 346 23 350 27 1495 18 999 25 1402 16 882 20 933 16 870 18 849 18 947CJJ81176_0436 - GTP-binding protein 35 127 27 128 25 138 16 120 12 361 14 223 13 314 14 247 17 409 13 461 12 413 13 383CJJ81176_0437 - hypothetical protein 19 208 12 253 16 236 9 269 16 357 7 105 11 341 9 160 13 261 3 67 7 182 3 86CJJ81176_0438 - gluconate 2-dehydrogenase subunit 3 26 332 23 174 26 372 17 187 23 1233 18 1022 21 1292 17 994 21 1460 17 1053 19 1581 16 844CJJ81176_0439 - oxidoreductase, putative 70 588 58 369 65 669 42 352 51 2849 38 1752 46 2984 39 1743 46 2911 38 1922 41 3290 35 1713CJJ81176_0440 - hypothetical protein 7 25 4 13 5 35 4 10 1 26 1 12 1 29 0 0 2 47 1 24 1 51 1 27CJJ81176_0441 - hypothetical protein 12 76 7 55 10 80 7 68 5 216 3 146 6 203 4 155 4 253 3 247 5 329 2 170CJJ81176_0442 - HIT family protein 15 204 14 133 14 210 9 128 10 1053 10 641 10 1011 8 692 12 1643 9 1138 11 1784 9 1152CJJ81176_0443 - hypothetical protein 17 121 12 99 13 131 11 96 12 389 7 233 10 368 7 252 11 441 6 345 10 456 7 305CJJ81176_0444 - hypothetical protein 9 16 3 3 6 8 1 5 0 0 0 0 2 23 1 7 3 35 1 12 2 23 1 11CJJ81176_0445 - hypothetical protein 3 3 2 2 2 3 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0446 - ABC transporter, ATP-binding protein 25 121 11 37 24 143 6 36 18 456 8 190 17 418 10 229 15 422 6 134 11 464 5 105CJJ81176_0447 - hypothetical protein 4 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0448 - hypothetical protein 13 74 12 73 12 94 7 71 9 297 4 122 8 225 6 135 9 194 3 110 7 190 4 127CJJ81176_0449 - hypothetical protein 22 122 15 113 16 141 7 109 5 405 8 323 9 378 4 243 9 485 6 290 7 504 5 286CJJ81176_0450 - hypothetical protein 14 23 7 10 3 4 3 5 2 1747 2 1793 2 1632 2 1936 3 637 3 2978 2 659 3 3035CJJ81176_0451 - hypothetical protein 7 113 6 93 7 127 5 83 4 541 4 324 5 639 4 354 6 428 2 290 3 403 4 434CJJ81176_0456 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0458 murDUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3 2 1 1 0 0 0 0 1 8 1 8 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0459 mraYphospho-N-acetylmuramoyl-pentapeptide-transferase 5 4 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0460 pgm phosphoglyceromutase 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0461 fabG 3-ketoacyl-(acyl-carrier-protein) reductase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0462 - hypothetical protein 6 33 3 10 5 30 2 10 3 66 2 25 2 56 2 26 4 102 2 27 3 79 1 13CJJ81176_0463 sdhA succinate dehydrogenase, flavoprotein subunit 48 316 39 201 42 326 30 189 32 1303 24 765 33 1464 24 688 31 1410 21 982 26 1366 22 828CJJ81176_0464 sdhB succinate dehydrogenase, iron-sulfur protein 23 212 19 211 20 237 12 177 16 707 10 424 13 587 12 371 13 463 6 360 12 469 9 286CJJ81176_0465 sdhC succinate dehydrogenase, C subunit 14 77 11 61 13 91 10 51 8 270 6 120 8 246 8 128 13 533 7 342 8 497 8 326CJJ81176_0466 - TenA/Thi-4 family protein 22 99 18 82 17 118 11 81 14 399 10 371 10 380 11 354 15 515 6 503 13 471 5 386CJJ81176_0467 - hypothetical protein 7 51 8 31 3 36 6 34 5 268 6 185 5 192 7 141 6 149 4 244 4 96 3 100CJJ81176_0468 acpP acyl carrier protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0469 fabF 3-oxoacyl-(acyl carrier protein) synthase II 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0470 accA acetyl-CoA carboxylase carboxyltransferase 2 3 1 2 1 2 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0471 - TonB-dependent receptor, putative, 83 388 55 252 60 378 41 244 47 1227 39 775 46 1185 35 645 51 1281 25 616 40 1313 32 785CJJ81176_0472 - NUDIX domain-containing protein 15 48 10 29 12 41 4 23 8 112 1 10 11 157 0 0 8 131 1 18 6 134 1 11CJJ81176_0473 - methyl-accepting chemotaxis protein 27 66 11 26 22 72 9 29 13 363 7 152 11 329 8 186 15 389 5 110 11 426 4 86CJJ81176_0474 - hypothetical protein 5 8 0 0 3 6 0 0 1 15 1 12 3 54 0 0 4 49 0 0 3 48 0 0CJJ81176_0475 rpmB 50S ribosomal protein L28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0476 rpe ribulose-phosphate 3-epimerase 1 1 0 0 0 0 0 0 1 25 1 21 1 17 1 41 1 8 1 24 0 0 1 24CJJ81176_0477 - DNA polymerase III subunit epsilon 18 65 9 22 13 57 6 25 9 180 3 89 7 136 4 93 12 308 4 79 11 259 5 62CJJ81176_0478 thiC thiamine biosynthesis protein ThiC 39 735 30 1935 32 761 21 1707 25 1690 13 3078 24 1745 21 3240 29 2971 17 3783 24 3353 19 3394CJJ81176_0479 - hypothetical protein 15 22 1 2 11 25 0 0 4 59 0 0 5 62 0 0 4 44 0 0 3 46 0 0CJJ81176_0480 - hypothetical protein 13 68 2 7 11 49 2 6 11 433 2 27 10 420 2 31 13 411 2 46 9 390 2 35CJJ81176_0481 - hypothetical protein 34 72 2 2 24 77 0 0 20 505 1 8 20 544 0 0 19 346 0 0 12 294 0 0CJJ81176_0482 - hypothetical protein 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 13CJJ81176_0483 miaB adenosine tRNA methylthiotransferase 5 25 1 16 2 3 2 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0484 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0485 nusA transcription elongation factor NusA 4 5 2 3 0 0 1 2 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_0486 - transporter, putative 67 1079 52 1471 52 1230 36 1495 41 2178 36 1502 40 2368 39 1573 40 1599 30 1025 34 1741 24 1074CJJ81176_0487 - hypothetical protein 2 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 12 0 0 0 0CJJ81176_0488 - peptidase, putative 11 17 3 4 6 13 2 3 7 74 1 16 6 70 3 36 3 36 1 18 2 41 3 40CJJ81176_0489 recG ATP-dependent DNA helicase RecG 27 56 14 28 17 51 12 31 9 263 5 115 12 335 5 129 10 279 1 15 9 360 3 57CJJ81176_0490 - hypothetical protein 13 307 8 390 8 332 8 385 7 991 5 457 7 1028 5 514 8 334 4 168 7 370 4 140CJJ81176_0491 - putative transcriptional regulator 10 44 8 20 7 46 4 30 4 112 3 84 3 105 2 59 6 175 4 156 5 180 2 81CJJ81176_0492 paqP His/Glu/Gln/Arg/opine ABC transporter 13 25 6 7 10 27 2 3 4 79 0 0 4 72 1 10 7 68 0 0 7 99 0 0CJJ81176_0493 - His/Glu/Gln/Arg/opine ABC transporter 8 31 5 17 8 39 2 15 7 113 3 66 6 134 3 69 5 167 2 131 4 200 1 59CJJ81176_0494 paqQ amino acid ABC transporter, ATP-binding 11 40 5 19 8 46 2 11 5 134 1 17 5 141 1 16 3 181 2 49 4 195 2 84CJJ81176_0499 tuf elongation factor Tu 1 1 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0500 rpmG 50S ribosomal protein L33 1 7 1 2 1 1 1 2 1 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0502 secE preprotein translocase subunit SecE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0503 nusG transcription antitermination protein NusG 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0505 rplK 50S ribosomal protein L11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0506 rplA 50S ribosomal protein L1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0507 rplJ 50S ribosomal protein L10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0508 rplL 50S ribosomal protein L7/L12 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0509 rpoB DNA-directed RNA polymerase subunit beta 6 579 7 2325 1 619 1 1962 3 22022 1 52576 1 25549 2 64190 1 8387 1 24596 1 11843 1 27822CJJ81176_0510 rpoC DNA-directed RNA polymerase, beta' subunit 6 37 4 19 2 9 2 15 2 36 2 23 2 19 3 24 1 13 1 49 0 0 2 22CJJ81176_0511 rpsL 30S ribosomal protein S12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0512 rpsG 30S ribosomal protein S7 2 4 1 2 1 2 0 0 0 0 0 0 1 17 0 0 0 0 0 0 0 0 0 0CJJ81176_0513 fusA elongation factor G 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0515 - hypothetical protein 1 1 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_0516 - hypothetical protein 12 73 8 36 8 87 4 35 5 405 7 247 8 430 7 242 6 223 5 192 3 180 5 202CJJ81176_0517 - hypothetical protein 2 2 0 0 0 0 0 0 1 15 1 10 0 0 0 0 1 20 0 0 1 18 0 0CJJ81176_0518 - putative lipoprotein 9 25 6 16 2 12 4 11 1 26 1 8 1 37 0 0 1 49 1 12 1 43 1 27CJJ81176_0519 trpC indole-3-glycerol-phosphate synthase 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 1 11CJJ81176_0520 - Hit family protein 6 19 0 0 4 14 0 0 2 28 0 0 2 54 1 12 4 58 0 0 3 46 0 0CJJ81176_0521 ybbB tRNA 2-selenouridine synthase 14 118 10 64 12 128 7 74 10 495 6 241 10 517 10 314 11 453 5 253 9 476 5 335CJJ81176_0522 - hypothetical protein 2 1 0 0 1 1 0 0 1 15 1 16 1 10 1 14 1 8 1 31 1 15 1 16CJJ81176_0523 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0524 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0525 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0526 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0527 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0528 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0529 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0530 - putative outer-membrane protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0531 hemH ferrochelatase 4 19 3 17 1 9 2 15 1 8 2 21 0 0 1 7 0 0 1 12 0 0 2 30CJJ81176_0532 - Gfo/Idh/MocA family oxidoreductase 13 59 10 26 13 57 4 25 6 129 3 91 8 120 2 52 8 165 3 122 7 170 3 103CJJ81176_0533 - DegT/DnrJ/EryC1/StrS aminotransferase 3 8 2 6 2 11 2 4 1 23 1 27 1 19 1 22 2 31 0 0 1 10 1 30CJJ81176_0534 alaS alanyl-tRNA synthetase 5 7 5 11 3 7 3 10 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0535 - Maf-like protein 11 35 8 17 6 28 5 17 3 70 2 33 2 54 2 21 5 57 2 34 3 46 0 0CJJ81176_0536 pbpA penicillin-binding protein 1A 3 7 1 3 1 7 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0537 clpB ATP-dependent chaperone protein ClpB 102 704 72 457 83 807 60 468 69 2976 48 1465 68 3052 58 1598 68 2875 37 1819 51 3155 43 1821CJJ81176_0538 - hypothetical protein 16 193 10 104 12 211 7 124 9 620 9 357 10 705 9 366 12 563 6 204 11 469 8 291CJJ81176_0539 ctpA carboxyl-terminal protease 8 13 5 12 5 12 3 9 7 163 5 84 4 147 4 69 6 99 3 67 5 94 2 89

CJJ81176_0540 purCphosphoribosylaminoimidazole-succinocarboxamide synthase 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0541 purS phosphoribosylformylglycinamidine synthase 3 7 2 3 2 8 1 2 2 85 2 19 2 83 3 38 2 63 2 82 2 56 2 65CJJ81176_0542 purQ phosphoribosylformylglycinamidine synthase 10 30 5 9 7 25 2 10 6 144 3 45 6 153 5 91 4 126 2 113 4 127 3 100CJJ81176_0543 - hypothetical protein 3 4 2 2 0 0 0 0 2 57 1 87 2 58 1 83 1 60 1 58 1 56 1 121

CJJ81176_0544 -1-acyl-sn-glycerol-3-phosphate acyltransferase 3 6 1 1 1 8 1 2 1 47 1 31 1 60 1 29 1 31 1 49 1 73 1 22

CJJ81176_0545 - crcB protein 12 56 8 47 9 52 4 34 7 113 3 54 4 103 7 78 6 105 2 37 5 91 1 30CJJ81176_0546 htpG heat shock protein 90 11 17 2 2 9 13 1 2 2 32 0 0 4 54 0 0 2 13 0 0 1 13 0 0CJJ81176_0547 - hypothetical protein 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0548 - hypothetical protein 17 66 10 44 14 69 9 37 9 208 2 72 7 201 2 72 11 181 2 70 8 236 1 67CJJ81176_0549 - Na/Pi-cotransporter, putative 41 210 30 128 35 252 21 120 26 1303 19 573 25 1311 17 581 25 1478 10 488 22 1407 14 542CJJ81176_0550 - penicillin-binding protein 11 37 4 18 2 37 3 25 2 151 2 76 2 130 2 69 4 120 1 49 1 84 1 46

CJJ81176_0551 fliE flagellar hook-basal body protein FliE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0552 flgC flagellar basal body rod protein FlgC 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0553 flgB flagellar basal body rod protein FlgB 2 3 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0554 - hypothetical protein 54 470 39 477 40 498 32 462 35 2151 26 1943 29 1993 27 2088 42 2342 26 2261 32 2162 30 2560CJJ81176_0555 - hypothetical protein 14 13 5 5 1 2 0 0 1 8 1 12 0 0 1 7 0 0 1 34 1 10 1 22CJJ81176_0556 icd isocitrate dehydrogenase, NADP-dependent 6 13 2 4 2 15 2 4 3 127 1 8 2 132 1 17 1 9 0 0 0 0 0 0CJJ81176_0557 mdh malate dehydrogenase 20 27 10 13 12 25 3 6 13 478 7 134 11 478 6 122 10 472 7 284 5 514 7 216CJJ81176_0558 sucC succinyl-CoA synthetase subunit beta 9 16 4 5 7 18 1 3 5 47 1 8 7 89 0 0 3 31 0 0 1 13 0 0CJJ81176_0559 sucD succinyl-CoA synthase, alpha subunit 2 3 0 0 1 2 1 3 0 0 1 10 0 0 1 9 0 0 1 43 0 0 1 24CJJ81176_0560 oorD 2-oxoglutarate-acceptor oxidoreductase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0561 oorA 2-oxoglutarate-acceptor oxidoreductase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0562 oorB 2-oxoglutarate-acceptor oxidoreductase 0 0 0 0 0 0 1 2 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0563 oorC 2-oxoglutarate-acceptor oxidoreductase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0564 - hypothetical protein 1 3 1 3 1 2 1 6 1 11 0 0 1 19 1 9 1 8 1 27 0 0 1 30CJJ81176_0565 - hypothetical protein 3 4 1 3 1 2 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0566 - polyprenyl synthetase family protein 1 2 2 2 1 2 1 3 1 36 1 39 2 52 1 33 2 24 0 0 1 18 1 19CJJ81176_0567 hemA glutamyl-tRNA reductase 4 4 1 4 1 2 1 3 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0568 proS prolyl-tRNA synthetase 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0569 - hypothetical protein 8 15 4 7 3 13 1 6 2 26 0 0 1 27 1 7 3 38 1 18 2 33 0 0CJJ81176_0570 hemC porphobilinogen deaminase 2 4 1 1 1 3 0 0 0 0 1 10 1 10 0 0 0 0 0 0 0 0 0 0

CJJ81176_0571 -3-octaprenyl-4-hydroxybenzoate carboxy-lyase 6 9 8 8 1 1 0 0 2 17 0 0 0 0 1 7 1 6 0 0 0 0 1 22

CJJ81176_0572 flaG flagellar protein FlaG 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0573 fliD flagellar capping protein 1 74 2 95 1 65 1 94 1 19 1 33 1 25 2 38 0 0 1 40 0 0 2 73CJJ81176_0574 fliS flagellar protein FliS 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0575 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0576 efp elongation factor P 1 1 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 18 0 0 1 24CJJ81176_0577 - hypothetical protein 27 259 17 255 20 288 14 259 16 1113 15 678 17 1185 12 652 19 674 9 308 17 788 7 243CJJ81176_0578 - hypothetical protein 53 672 41 327 48 698 37 309 40 3683 29 2347 40 3793 30 2265 42 3278 24 1587 36 3239 25 1554CJJ81176_0579 - hypothetical protein 45 466 35 477 40 517 32 454 32 2095 25 2009 33 2248 31 2372 34 2134 23 1638 30 2311 24 1786CJJ81176_0580 - hypothetical protein 62 656 53 507 55 710 41 493 43 2620 34 2057 40 2577 38 2044 43 2342 34 2102 37 2641 31 2140CJJ81176_0581 - hypothetical protein 20 148 13 99 19 171 9 101 11 516 10 350 17 668 11 347 20 669 7 302 13 525 8 302CJJ81176_0582 - hypothetical protein 64 591 54 408 62 631 39 386 47 2960 35 1947 45 2692 37 1743 49 2677 28 1559 42 2654 28 1508CJJ81176_0583 proA gamma-glutamyl phosphate reductase 56 543 49 296 51 520 37 291 40 1800 33 1537 42 1816 36 1568 41 2060 31 1855 41 2491 30 1457CJJ81176_0584 - pyridine nucleotide-disulphide oxidoreductase 32 185 19 82 26 194 13 71 19 768 7 227 18 738 5 226 20 955 7 445 18 973 6 451CJJ81176_0585 - MATE efflux family protein 69 547 52 289 58 578 43 341 45 2068 37 1245 43 1946 45 1134 55 2135 31 1217 47 2200 31 1157CJJ81176_0586 - hypothetical protein 67 615 59 503 62 681 48 479 53 2751 41 2129 55 2792 41 2046 52 2801 36 2487 45 2917 33 2431CJJ81176_0587 dnaB replicative DNA helicase 1 1 2 2 0 0 0 0 1 9 1 8 0 0 1 14 0 0 1 21 0 0 1 19CJJ81176_0588 - hypothetical protein 23 197 18 164 19 225 15 144 18 985 12 802 14 968 15 792 14 927 9 543 12 958 7 564CJJ81176_0589 - hypothetical protein 22 285 19 197 20 292 18 199 15 1149 15 1172 16 1195 14 1049 16 1013 13 982 15 999 12 901CJJ81176_0590 - hypothetical protein 27 262 23 178 26 256 21 176 19 1711 17 925 20 1752 18 990 19 1580 11 662 16 1571 13 766CJJ81176_0591 - hypothetical protein 39 520 35 507 39 593 30 485 34 1832 22 1255 30 1667 25 1291 28 1360 19 1184 25 1394 20 1295CJJ81176_0592 - hypothetical protein 34 491 28 391 32 536 24 416 26 4129 22 8096 30 4347 23 8637 29 3344 19 5038 21 3399 20 6114CJJ81176_0593 - hypothetical protein 14 157 12 110 13 149 8 96 12 380 8 282 8 399 10 285 13 670 10 519 10 629 10 432CJJ81176_0594 - hypothetical protein 7 68 6 54 8 83 5 55 4 208 4 169 5 230 5 209 6 238 4 232 6 208 6 270CJJ81176_0595 - putative ATP 6 67 5 36 6 62 4 36 4 178 4 144 4 209 4 126 4 217 4 171 4 256 4 178CJJ81176_0596 - hypothetical protein 38 416 33 300 35 425 28 292 28 1847 25 1191 28 1727 24 1249 32 1802 21 1333 31 1921 24 1187CJJ81176_0597 - transcriptional regulator, putative 21 135 16 61 22 120 13 57 11 350 11 278 15 393 9 195 16 491 7 201 12 436 12 297

CJJ81176_0600 ribB

bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 2 2 0 0 0 0 0 0 1 8 0 0 0 0 0 0 1 6 0 0 0 0 0 0

CJJ81176_0601 - GatB/Yqey family protein 7 63 5 36 7 71 5 38 6 310 4 153 6 362 5 129 5 312 4 183 3 266 4 278CJJ81176_0602 ilvB acetolactate synthase 3 catalytic subunit 77 909 56 327 71 924 45 315 64 4715 41 2776 59 5066 48 3004 60 4455 28 2459 55 4967 28 2277CJJ81176_0603 ilvH acetolactate synthase 3 regulatory subunit 17 74 7 24 15 87 5 20 11 257 4 68 11 310 5 93 8 258 3 70 6 357 5 132CJJ81176_0604 lpxD UDP-3-O-glucosamine N-acyltransferase 3 3 1 1 1 2 0 0 1 8 1 23 0 0 1 9 1 11 1 18 1 10 0 0

CJJ81176_0605 queAS-adenosylmethionine:tRNA ribosyltransferase-isomerase 30 183 16 154 22 192 10 131 13 940 8 581 14 906 7 562 11 515 6 580 12 593 6 604

CJJ81176_0606 tatC Sec-independent protein translocase TatC 1 15 1 11 1 30 1 22 1 51 1 33 1 52 1 40 0 0 0 0 0 0 1 11CJJ81176_0607 tatB sec-independent translocase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0608 - coproporphyrinogen III oxidase 41 246 30 196 31 274 26 201 23 1070 17 427 19 920 20 462 31 1223 17 751 22 1077 19 639CJJ81176_0609 nidH dinucleoside polyphosphate hydrolase 4 4 0 0 1 1 0 0 1 19 1 16 1 27 1 19 2 27 0 0 3 41 0 0

CJJ81176_0610 lysC aspartate kinase 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0611 - hypothetical protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0612 - DNA polymerase III subunit delta' 3 3 1 1 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0613 folP dihydropteroate synthase 3 9 1 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0614 ligA NAD-dependent DNA ligase LigA 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0615 - hypothetical protein 9 9 7 9 3 7 4 9 2 19 1 19 2 23 3 28 3 36 1 34 2 23 1 27CJJ81176_0616 tlyA hemolysin A 17 130 11 142 11 151 9 164 10 512 7 361 7 443 8 359 12 522 4 394 9 522 5 440

CJJ81176_0617 -bifunctional riboflavin kinase/FMN adenylyltransferase 7 20 3 10 2 18 1 9 4 197 2 192 2 163 3 207 2 151 3 165 3 150 2 165

CJJ81176_0618 - methyltransferase, putative 9 20 5 11 5 17 2 6 2 78 2 41 3 87 2 31 4 113 3 92 4 129 2 103CJJ81176_0619 - putative lipoprotein 7 21 5 11 5 26 1 4 3 53 4 58 2 60 3 50 4 127 1 31 4 139 2 40CJJ81176_0620 - hypothetical protein 8 17 3 10 5 15 4 11 5 81 3 27 1 10 2 22 2 25 1 27 2 23 1 13CJJ81176_0621 - hypothetical protein 21 216 17 116 22 239 12 121 19 1550 14 670 18 1689 16 768 16 793 10 549 14 844 7 394CJJ81176_0622 - DNA/RNA non-specific endonuclease 23 75 11 27 16 88 7 25 12 1146 7 628 11 1170 9 673 13 880 6 799 11 897 5 909CJJ81176_0623 nth endonuclease III 18 258 13 158 17 320 6 178 13 890 10 406 12 937 11 526 12 795 8 378 9 902 6 351CJJ81176_0624 peb4A major antigenic peptide PEB4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 17 0 0 1 25 1 13CJJ81176_0625 fbaA fructose-bisphosphate aldolase 3 44 1 44 1 41 1 14 1 100 1 111 1 126 1 85 1 134 1 290 1 124 1 391CJJ81176_0626 - hypothetical protein 47 370 31 228 39 432 21 238 25 1579 19 857 23 1638 17 864 28 1563 16 1138 21 1734 15 1155CJJ81176_0627 - chemotaxis protein MotB, putative 27 125 16 71 20 134 13 69 18 647 9 505 12 515 10 392 16 950 5 555 13 857 10 386CJJ81176_0628 - hypothetical protein 37 205 30 109 30 202 16 95 20 900 15 466 23 902 19 506 25 700 12 479 20 651 14 391CJJ81176_0629 - sodium-dependent transporter, putative 81 820 66 622 76 829 51 573 60 3868 48 2397 59 3739 45 2545 59 3451 37 2310 48 3822 35 2104CJJ81176_0630 - MOSC domain-containing protein 42 919 37 752 37 972 33 776 36 3775 27 3000 30 3726 27 3007 32 3673 26 3341 29 3776 26 3178CJJ81176_0631 dsbD thiol:disulfide interchange protein DsbD 9 16 4 10 2 3 2 5 0 0 0 0 1 19 3 22 0 0 0 0 1 13 2 22CJJ81176_0632 - hypothetical protein 22 188 16 117 20 187 14 105 17 650 14 396 14 577 14 393 15 573 9 241 15 613 12 370CJJ81176_0633 - polyphosphate kinase 2 19 94 13 58 14 78 6 45 9 263 9 185 10 246 11 212 9 222 5 128 8 274 5 178CJJ81176_0634 - carboxypeptidase 56 1502 48 970 52 1452 40 901 46 5817 37 4962 43 5499 36 4979 47 6011 33 4726 38 5946 33 4724CJJ81176_0635 macA macrolide-specific efflux protein macA 55 372 36 214 50 383 28 211 37 1412 27 841 36 1617 28 901 42 1626 28 1077 35 1703 25 1184CJJ81176_0636 macB macrolide-specific efflux protein macB 68 680 47 403 60 684 40 390 46 2316 35 1387 45 2397 39 1615 49 2634 29 1678 43 2752 29 1694CJJ81176_0637 - outer membrane efflux protein 35 398 19 844 29 408 11 691 21 1947 9 2295 19 1964 10 2377 24 1438 10 1382 19 1247 10 1592CJJ81176_0638 - hypothetical protein 35 68 9 11 20 72 2 3 17 302 3 25 17 339 1 12 11 173 0 0 11 243 1 13CJJ81176_0639 - hypothetical protein 30 106 13 34 24 94 7 29 12 274 6 93 9 261 8 105 17 338 7 134 12 342 5 119CJJ81176_0640 algI alginate O-acetyltransferase AlgI 69 433 44 194 53 452 28 194 39 1932 24 659 36 2076 28 723 41 2222 20 1077 33 2063 20 977CJJ81176_0641 ftn nonheme iron-containing ferritin 26 152 15 58 20 185 11 56 15 401 6 87 15 364 5 74 18 524 10 262 14 497 7 189CJJ81176_0642 - phosphate ABC transporter, periplasmic 41 637 30 430 36 693 25 447 25 3080 21 1387 25 3127 21 1592 32 3619 21 2410 25 3756 24 2811CJJ81176_0643 pstC phosphate ABC transporter, permease protein 40 804 38 576 38 850 32 573 31 3059 26 2221 30 2976 30 2210 33 3201 30 2923 27 3003 25 2706CJJ81176_0644 pstA phosphate ABC transporter, permease protein 47 565 40 539 40 672 33 518 35 4100 27 2955 35 4309 30 2966 35 5010 24 3692 28 6148 25 3240CJJ81176_0645 pstB phosphate ABC transporter ATP-binding 17 100 15 83 11 129 11 85 11 871 8 484 11 926 11 476 12 667 7 378 12 687 8 375CJJ81176_0646 - hypothetical protein 40 502 34 401 38 550 22 383 27 2461 22 2291 27 2310 25 2039 29 2151 14 2594 23 2025 18 2533CJJ81176_0647 - hypothetical protein 32 155 20 95 23 177 11 97 13 422 7 161 14 492 9 195 13 486 7 278 7 428 7 262CJJ81176_0648 - MATE efflux family protein 58 551 43 342 45 573 34 344 37 1921 29 1249 39 2053 35 1327 41 2781 26 2044 34 2669 29 1945CJJ81176_0649 - hypothetical protein 21 95 18 75 16 105 11 60 13 490 8 387 12 575 9 392 11 257 3 174 7 291 5 216CJJ81176_0650 - hypothetical protein 41 208 28 118 33 221 18 121 26 809 13 406 22 670 14 433 24 888 13 571 16 750 15 585CJJ81176_0651 hypF [NiFe] hydrogenase maturation protein HypF 59 503 43 328 50 510 37 319 32 1883 25 1580 33 1936 24 1435 36 2417 18 2420 33 2319 19 2064CJJ81176_0652 hypB hydrogenase accessory protein HypB 15 91 9 49 16 110 6 64 10 325 7 212 9 321 7 243 8 244 5 204 8 271 8 235CJJ81176_0653 hypC hydrogenase assembly chaperone HypC/HupF 4 5 2 2 2 3 0 0 3 38 1 10 1 14 0 0 2 25 1 31 2 35 0 0CJJ81176_0654 hypD hydrogenase expression/formation protein 29 104 18 53 20 117 10 52 13 342 8 119 14 335 8 135 20 447 8 150 15 400 10 189CJJ81176_0655 hypE hydrogenase expression/formation protein 21 135 17 100 21 161 11 93 14 962 9 585 16 862 11 594 14 823 5 351 11 796 8 362CJJ81176_0656 hypA hydrogenase nickel insertion protein HypA 15 58 10 31 15 68 5 20 10 240 5 128 9 219 5 117 8 236 1 134 6 177 3 138CJJ81176_0657 - prophage Lp2 protein 6 35 192 23 120 29 207 19 119 24 860 13 521 18 1055 13 528 17 666 10 433 16 659 11 437CJJ81176_0658 holA DNA polymerase III subunit delta 3 3 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 10 0 0CJJ81176_0659 - RNB-like protein 33 125 23 98 25 148 14 85 22 934 13 915 21 1015 14 909 22 793 9 592 17 811 12 669CJJ81176_0660 ilvC ketol-acid reductoisomerase 3 16 2 5 4 14 2 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0661 - hypothetical protein 2 2 1 1 1 1 0 0 0 0 0 0 0 0 1 10 1 6 0 0 0 0 0 0CJJ81176_0662 dprA DNA processing protein A 17 103 11 49 12 98 6 43 9 314 7 130 7 267 7 117 8 222 3 64 6 203 2 40CJJ81176_0663 - Holliday junction resolvase-like protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0664 - NOL1/NOP2/sun family protein 1 1 0 0 0 0 1 2 0 0 0 0 0 0 1 9 0 0 1 18 0 0 0 0CJJ81176_0665 msrA methionine sulfoxide reductase A 13 16 1 1 6 13 1 2 3 38 2 17 3 50 1 9 4 46 1 15 1 20 0 0CJJ81176_0666 ppa inorganic pyrophosphatase 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0667 adk adenylate kinase 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0668 aspS aspartyl-tRNA synthetase 3 6 0 0 3 4 1 2 1 25 0 0 1 8 1 9 2 16 1 34 0 0 0 0CJJ81176_0669 pnk inorganic polyphosphate/ATP-NAD kinase 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0670 recN DNA repair protein RecN 15 39 4 19 6 38 2 13 2 30 0 0 2 27 0 0 1 11 0 0 2 25 0 0CJJ81176_0671 - response regulator 6 9 3 3 3 6 1 2 2 55 1 8 2 43 0 0 0 0 1 52 0 0 0 0CJJ81176_0672 - TatD family hydrolase 0 0 2 2 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0673 -membrane-bound lytic murein transglycosylase 12 76 5 22 9 105 3 17 7 405 2 124 7 407 4 169 9 319 2 104 5 266 2 86

CJJ81176_0674 rlpA rare lipoprotein A 7 52 2 31 4 39 1 24 3 85 1 37 3 132 1 43 3 87 1 12 2 73 2 38CJJ81176_0675 - YrbI family phosphatase 4 5 2 3 2 4 2 4 2 49 1 16 2 56 0 0 1 17 1 21 1 15 1 27CJJ81176_0676 - hypothetical protein 1 2 2 3 1 1 2 3 0 0 0 0 0 0 0 0 1 6 1 18 0 0 1 19CJJ81176_0677 - OstA family protein 3 8 1 5 1 10 1 4 1 9 0 0 0 0 0 0 0 0 0 0 1 20 1 11CJJ81176_0678 engB ribosome biogenesis GTP-binding protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0679 - hypothetical protein 5 4 4 4 1 1 0 0 2 15 1 14 0 0 1 12 1 6 0 0 0 0 0 0CJJ81176_0680 pbpC penicillin-binding protein 2 7 7 2 3 1 1 2 3 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0681 - M24 family peptidase 83 725 54 387 67 842 45 407 48 3178 36 1766 47 3327 37 1661 49 2315 27 1065 40 2395 24 974CJJ81176_0682 - di-/tripeptide transporter 55 776 41 459 46 806 34 494 38 2730 29 1929 36 2765 27 1724 38 2669 22 1754 32 2823 22 1808CJJ81176_0683 - di-/tripeptide transporter 22 171 16 76 17 162 10 67 13 724 12 443 14 689 12 361 13 782 9 412 13 717 7 224CJJ81176_0684 - di-/tripeptide transporter 6 29 3 8 6 23 4 13 4 166 3 37 5 199 3 36 3 126 2 37 4 165 1 24CJJ81176_0685 - di-/tripeptide transporter 73 612 53 508 61 650 39 472 40 2015 29 1381 40 2105 35 1349 48 2027 34 1233 38 2010 30 1211CJJ81176_0686 - hypothetical protein 19 1020 16 606 19 1177 16 676 16 3520 15 2100 15 3449 16 2248 17 3327 13 1907 13 3069 11 1945CJJ81176_0687 - hypothetical protein 50 450 34 250 41 470 30 260 33 1664 16 849 33 1487 19 849 35 1344 18 885 30 1303 14 755CJJ81176_0688 era GTP-binding protein Era 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0689 hslU ATP-dependent protease ATP-binding subunit 6 6 3 3 2 3 0 0 4 142 3 62 5 118 2 33 2 50 1 15 2 58 1 11CJJ81176_0690 hslV ATP-dependent protease peptidase subunit 4 9 2 5 2 9 0 0 2 76 1 17 3 64 1 19 0 0 0 0 0 0 0 0CJJ81176_0691 rplI 50S ribosomal protein L9 5 6 3 4 0 0 2 3 1 21 2 23 0 0 1 9 1 19 0 0 1 41 0 0CJJ81176_0692 argG argininosuccinate synthase 24 143 22 99 19 153 14 95 18 824 17 758 23 823 19 706 20 578 11 522 16 578 14 569CJJ81176_0693 - S4 domain-containing protein 12 89 10 55 9 87 6 61 7 440 8 200 11 498 6 200 10 437 5 214 6 459 5 156CJJ81176_0694 - hypothetical protein 1 2 1 1 0 0 0 0 1 9 0 0 0 0 1 9 0 0 0 0 0 0 0 0CJJ81176_0695 - ABC transporter, ATP-binding protein 2 4 2 12 1 2 1 15 2 19 2 35 2 21 2 35 1 8 1 24 1 10 1 27CJJ81176_0696 rpoN RNA polymerase factor sigma-54 53 461 2 3 47 540 0 0 45 4397 2 23 49 4494 0 0 49 3042 0 0 42 2963 1 13CJJ81176_0697 dcuB anaerobic C4-dicarboxylate transporter 76 937 66 626 71 983 50 612 51 4123 38 3179 51 4032 47 3294 48 4076 32 3384 44 4278 35 3491CJJ81176_0698 kdpF? hypothetical protein 2 43 2 33 2 45 2 29 2 113 1 142 2 120 2 157 2 153 2 180 2 172 2 237

CJJ81176_0699 kdpApotassium-transporting ATPase, A subunit, degenerate 64 589 39 274 49 452 27 225 33 1554 18 1121 32 1605 21 1033 34 1677 17 973 27 1698 20 1093

CJJ81176_0700 kdpB potassium-transporting ATPase subunit B 74 403 52 267 64 450 33 248 44 1834 28 1181 40 2010 29 1385 43 1630 22 1251 34 1559 26 1503CJJ81176_0701 kdpC potassium-transporting ATPase, C subunit, 16 67 12 35 14 78 9 31 11 265 5 51 11 269 5 57 13 250 5 107 7 190 5 116CJJ81176_0702 kdpD truncated KdpD protein 38 131 12 58 30 136 7 49 15 495 9 243 18 525 7 210 17 456 5 238 9 413 5 275CJJ81176_0703 uvrB excinuclease ABC subunit B 73 369 32 117 66 388 23 114 43 1926 21 777 40 1809 20 792 49 2041 16 662 41 1987 14 591CJJ81176_0704 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0705 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0706 - hypothetical protein 8 24 4 11 6 21 2 8 4 64 1 10 3 52 1 10 3 41 0 0 2 30 1 19CJJ81176_0707 priA primosome assembly protein PriA 8 16 6 10 2 5 2 4 1 11 1 47 1 27 1 50 1 33 1 354 2 43 1 151CJJ81176_0708 - invasion phenotype protein 87 789 55 497 62 879 42 505 53 3042 32 1527 50 2901 34 1468 50 2389 22 1181 38 2403 26 1120

CJJ81176_0709 ispG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 3 7 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0710 flgH flagellar basal body L-ring protein 7 8 0 0 2 6 0 0 5 59 0 0 5 52 0 0 1 8 0 0 1 5 0 0CJJ81176_0711 pta phosphate acetyltransferase 38 148 16 58 29 159 13 60 15 560 7 117 17 622 7 150 13 452 5 107 14 512 6 105CJJ81176_0712 ackA acetate kinase 36 425 23 177 33 473 13 191 23 2057 9 734 21 2380 12 837 26 2595 7 671 21 2656 6 753CJJ81176_0713 - hypothetical protein 116 676 67 454 83 678 41 422 62 2571 32 1480 55 2492 41 1637 62 2364 36 1638 48 2382 37 1770CJJ81176_0714 - hypothetical protein 11 25 4 4 7 27 2 3 4 66 1 8 5 83 0 0 5 98 0 0 5 117 1 16CJJ81176_0715 - hypothetical protein 4 4 1 1 1 1 1 2 1 9 0 0 1 8 1 10 0 0 0 0 1 10 1 11CJJ81176_0716 mraW S-adenosyl-methyltransferase MraW 3 3 1 3 1 4 0 0 2 32 2 21 1 12 1 12 2 20 4 82 3 38 3 97CJJ81176_0717 - peptidyl-prolyl cis-trans isomerase D 3 2 3 3 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 13 1 13CJJ81176_0718 ftsA cell division protein FtsA 4 9 3 6 2 3 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0719 ftsZ cell division protein FtsZ 1 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0720 flgF flagellar basal-body rod protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0721 flgG flagellar basal body rod protein FlgG 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0722 glnA glutamine synthetase, type I 4 3 2 3 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0723 - hypothetical protein 2 2 1 1 1 1 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0724 - U32 family peptidase 2 2 1 1 0 0 1 2 1 15 1 23 1 17 1 33 2 20 1 37 1 10 1 27CJJ81176_0725 purE phosphoribosylaminoimidazole carboxylase 2 1 0 0 1 1 0 0 0 0 0 0 1 10 0 0 0 0 0 0 0 0 0 0CJJ81176_0726 - hypothetical protein 1 1 0 0 1 2 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0727 glyQ glycyl-tRNA synthetase subunit alpha 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0728 - hypothetical protein 11 37 9 20 13 58 6 17 4 127 2 27 6 110 2 36 7 164 1 27 5 185 2 30CJJ81176_0729 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0730 waaA3-deoxy-D-manno-octulosonic-acid transferase 3 4 1 4 1 2 1 4 1 19 0 0 1 33 1 21 3 28 1 15 1 15 2 30

CJJ81176_0731 - RNA pseudouridine synthase family protein 5 15 3 11 5 23 1 11 1 47 1 23 1 37 2 33 2 46 1 12 2 66 0 0CJJ81176_0732 ffh signal recognition particle protein 3 34 2 110 1 33 2 101 1 164 1 435 1 192 1 490 1 164 1 824 1 162 1 990CJJ81176_0733 rpsP 30S ribosomal protein S16 0 0 1 1 0 0 0 0 1 8 1 8 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0734 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0735 rimM 16S rRNA processing protein RimM 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0736 trmD tRNA (guanine-N(1)-)-methyltransferase 3 3 2 2 0 0 0 0 0 0 0 0 1 12 0 0 0 0 0 0 1 10 2 35CJJ81176_0737 rplS 50S ribosomal protein L19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0738 - transthyretin-like protein 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0739 - 3-deoxy-7-phosphoheptulonate synthase 2 4 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0740 - hypothetical protein 4 20 2 9 3 29 1 10 3 78 1 17 3 58 2 41 3 173 2 79 2 172 2 116CJJ81176_0741 dnaE DNA polymerase III subunit alpha 3 4 3 3 0 0 1 2 2 17 1 12 0 0 1 16 1 8 0 0 0 0 0 0CJJ81176_0742 - hypothetical protein 4 5 0 0 0 0 0 0 1 9 0 0 1 12 0 0 4 41 0 0 3 48 0 0CJJ81176_0743 flaC flagellin subunit protein FlaC 7 7 3 3 2 3 0 0 1 9 0 0 1 14 0 0 2 28 1 12 0 0 0 0CJJ81176_0744 - hypothetical protein 11 18 7 9 5 10 5 10 3 40 3 51 3 41 2 40 2 19 1 24 2 28 2 40CJJ81176_0745 - HemK family modification methylase 7 19 3 5 4 14 3 8 2 38 2 33 3 41 2 26 2 47 1 31 1 38 1 24CJJ81176_0746 - M48 family peptidase 15 25 11 25 8 16 7 18 5 79 3 43 5 66 3 50 3 50 4 82 4 68 4 65CJJ81176_0747 - hypothetical protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0748 mogA molybdenum cofactor biosynthesis protein 13 41 2 8 6 41 3 14 5 221 1 8 3 194 1 12 4 134 0 0 3 96 1 13CJJ81176_0749 corA magnesium and cobalt transport protein CorA 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0750 -ABC transporter, periplasmic substrate-binding protein 52 472 40 389 47 521 35 366 33 2114 25 1335 32 2192 30 1240 31 1739 21 1400 29 1812 19 1422

CJJ81176_0751 - hypothetical protein 50 381 38 215 39 385 27 213 29 1297 21 791 29 1363 23 726 34 1973 14 986 27 2017 15 923CJJ81176_0752 - hypothetical protein 40 343 34 178 36 347 28 194 29 1216 18 618 29 1222 23 714 33 1508 19 836 28 1604 18 607CJJ81176_0753 - ABC transporter, permease protein 29 156 20 143 21 163 15 141 19 1450 12 1020 15 1483 10 1070 15 461 5 207 10 388 9 216CJJ81176_0754 - ABC transporter, permease protein 34 1341 28 1032 29 1357 25 1073 28 5159 25 3427 23 5323 23 3495 29 3814 21 2844 27 4037 19 3022CJJ81176_0755 - ABC transporter, ATP-binding protein 32 170 18 81 21 183 11 68 16 588 10 344 14 687 11 390 20 817 13 577 17 1011 10 505CJJ81176_0756 - HAD family hydrolase 26 117 19 82 20 125 12 78 15 238 4 68 16 240 8 119 9 216 4 110 7 226 6 143CJJ81176_0757 cjaC cjaC protein 23 54 12 27 19 65 7 32 7 138 5 72 10 167 6 98 12 220 5 113 7 220 4 65CJJ81176_0758 - hypothetical protein 23 113 16 53 15 105 13 63 11 471 10 190 15 500 13 248 13 567 9 330 14 613 8 232CJJ81176_0759 - hypothetical protein 69 416 45 219 54 400 34 227 42 2079 23 1241 40 2229 28 1222 33 1844 23 1117 31 2020 19 1001CJJ81176_0760 - hemagglutination domain-containing protein 21 256 17 156 21 295 16 174 18 1072 13 1004 18 1183 14 1216 18 1150 11 1150 16 1194 12 1211CJJ81176_0761 - hypothetical protein 53 348 39 326 49 409 33 317 36 1488 26 913 34 1406 26 963 33 1028 20 647 28 1151 20 658CJJ81176_0762 - hypothetical protein 3 23 4 41 3 29 1 27 1 62 1 25 2 99 1 28 4 198 2 101 3 188 2 105CJJ81176_0763 - hypothetical protein 29 260 26 205 30 321 16 266 15 1083 11 600 14 906 10 633 17 826 11 705 14 925 11 469CJJ81176_0764 - putative outer-membrane protein 54 525 38 453 45 558 28 514 30 1493 22 921 27 1520 24 871 31 1388 17 912 27 1564 20 888CJJ81176_0765 - hypothetical protein 3 28 2 11 2 21 2 13 2 91 1 37 2 77 1 33 2 83 1 46 2 81 2 49CJJ81176_0770 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0772 - hypothetical protein 20 54 9 21 14 52 2 7 11 221 3 35 7 159 5 47 10 140 1 31 9 238 1 19CJJ81176_0773 hrcA heat-inducible transcription repressor 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0774 grpE heat shock protein GrpE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0775 dnaK molecular chaperone DnaK 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0776 - type I restriction-modification system 54 388 42 233 49 377 27 207 35 1654 21 931 37 1783 22 885 32 1264 14 693 25 1247 19 801

CJJ81176_0777 -type I restriction modification DNA specificity domain-containing protein 31 95 21 63 26 106 6 41 15 344 10 163 12 352 11 167 16 302 7 140 15 319 6 138

CJJ81176_0778 - hypothetical protein 24 181 18 108 20 213 12 117 12 544 10 420 13 618 10 390 13 729 8 439 9 659 6 359CJJ81176_0779 - hypothetical protein 27 85 16 46 21 116 9 45 16 325 8 148 14 296 7 126 20 330 7 140 14 302 6 97CJJ81176_0780 - type I site-specific deoxyribonuclease chain R 74 249 39 92 60 267 29 107 47 994 27 523 36 848 27 604 47 1345 20 616 33 1293 21 518CJJ81176_0781 - hypothetical protein 15 74 12 42 11 83 7 40 8 401 7 188 8 455 6 202 13 277 7 146 7 238 9 186CJJ81176_0782 - hypothetical protein 10 91 7 55 10 117 4 49 5 335 3 144 6 393 5 171 7 241 2 113 2 248 3 108CJJ81176_0783 aspC aspartate aminotransferase 4 7 0 0 3 5 0 0 4 47 0 0 2 43 0 0 5 52 0 0 3 41 0 0CJJ81176_0784 cysE serine acetyltransferase 7 8 4 5 4 6 1 2 1 36 1 25 1 27 1 26 1 14 2 40 1 10 0 0CJJ81176_0785 speA arginine decarboxylase 2 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 20 1 11CJJ81176_0786 hisS histidyl-tRNA synthetase 4 5 1 1 0 0 0 0 0 0 1 8 0 0 1 9 0 0 0 0 1 10 0 0CJJ81176_0787 tmk thymidylate kinase 1 1 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0788 coaD phosphopantetheine adenylyltransferase 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0789 -3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2 4 1 2 0 0 1 2 1 8 1 8 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0790 flgA flagellar basal body P-ring biosynthesis 1 1 1 1 1 1 1 2 2 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0791 - NLPA family lipoprotein 34 210 19 149 28 237 18 152 23 1165 15 626 19 988 13 549 22 939 11 265 19 798 11 256CJJ81176_0792 - NLPA family lipoprotein 39 169 22 68 32 159 12 62 22 637 10 297 16 629 12 366 19 489 10 302 17 547 11 219CJJ81176_0793 - NLPA family lipoprotein 18 39 6 12 12 32 5 14 7 121 2 17 6 95 2 22 8 151 2 43 7 157 1 40CJJ81176_0794 - ABC transporter, permease protein 9 19 4 8 4 16 1 3 3 45 2 17 3 37 3 28 4 60 1 15 2 43 0 0CJJ81176_0795 - ABC transporter, ATP-binding protein 4 7 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0796 valS valyl-tRNA synthetase 3 30 4 37 3 29 2 32 0 0 1 12 1 14 1 12 1 6 0 0 1 10 1 19CJJ81176_0797 - hypothetical protein 5 5 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0798 - putative ATP-dependent DNA helicase 2 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0799 peb2 major antigenic peptide PEB2 17 73 12 40 14 78 7 36 11 336 8 247 11 327 7 219 10 367 4 211 10 380 7 302CJJ81176_0800 tpx thiol peroxidase 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 1 15 0 0CJJ81176_0801 napA nitrate reductase catalytic subunit 68 394 61 281 67 437 41 262 51 1698 38 1309 49 1799 40 1349 50 2017 35 1834 47 2093 31 1719CJJ81176_0802 napG quinol dehydrogenase periplasmic component 30 185 23 121 28 228 15 103 22 1142 15 703 21 1150 11 687 19 1260 13 1007 15 1249 13 1114CJJ81176_0803 napH quinol dehydrogenase membrane component 23 101 13 102 16 120 7 99 13 340 6 136 13 298 5 88 12 255 5 156 12 286 9 197CJJ81176_0804 napB periplasmic nitrate reductase, small subunit 21 388 13 409 17 413 10 351 14 1253 10 610 15 1491 12 751 15 631 9 452 13 611 9 518CJJ81176_0805 napL napL protein 29 172 17 113 17 191 9 103 17 630 8 295 12 701 8 352 18 793 5 403 11 705 7 550CJJ81176_0806 napD napD protein 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0807 - hypothetical protein 2 3 2 5 1 2 1 4 2 38 1 52 2 43 2 59 2 46 2 232 2 35 2 189CJJ81176_0808 - hypothetical protein 3 3 0 0 1 3 0 0 1 21 1 21 2 31 1 21 2 22 0 0 2 28 1 13CJJ81176_0809 - hypothetical protein 2 4 1 2 1 1 0 0 1 8 0 0 1 8 0 0 0 0 1 12 0 0 0 0CJJ81176_0810 cca polyA polymerase family protein 3 6 2 5 1 5 1 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0811 purU formyltetrahydrofolate deformylase 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0CJJ81176_0812 - aminotransferase, putative 2 12 4 7 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0813 - hypothetical protein 23 92 16 87 19 116 12 88 13 418 11 278 13 407 11 338 13 258 6 201 8 248 7 208CJJ81176_0814 flgR sensor histidine kinase 39 284 2 2 31 330 1 2 37 4123 0 0 33 4059 0 0 30 3015 0 0 27 3127 0 0CJJ81176_0815 - hypothetical protein 24 122 19 97 23 135 11 69 18 558 13 330 15 571 13 354 18 722 12 522 13 735 12 440CJJ81176_0816 - Mur ligase family protein 8 19 7 11 2 12 3 7 1 25 1 10 2 37 1 19 1 28 3 49 1 35 2 43CJJ81176_0817 - hypothetical protein 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0818 - prevent-host-death family protein 0 0 1 1 0 0 0 0 1 19 1 19 1 17 1 9 1 11 1 40 1 10 1 16CJJ81176_0819 ddl D-alanyl-alanine synthetase A 1 1 1 1 0 0 0 0 0 0 0 0 1 12 0 0 1 11 0 0 0 0 0 0CJJ81176_0820 ruvA Holliday junction DNA helicase RuvA 1 1 1 1 1 2 0 0 0 0 1 12 1 8 0 0 1 6 0 0 0 0 1 11CJJ81176_0821 - hypothetical protein 13 35 8 16 7 17 1 8 5 72 3 35 5 68 2 36 3 28 3 61 2 38 3 40CJJ81176_0822 mviN integral membrane protein MviN 4 4 1 3 1 4 1 4 1 9 1 25 1 14 1 7 1 14 1 12 0 0 0 0CJJ81176_0823 cysS cysteinyl-tRNA synthetase 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0824 - ATP-binding protein/permease MsbA, 3 3 2 3 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0825 pyrD dihydroorotate dehydrogenase 2 4 3 2 2 2 3 0 0 4 34 0 0 1 8 0 0 1 6 0 0 0 0 0 0CJJ81176_0826 - M16 family peptidase 27 94 11 61 16 87 6 49 11 340 8 153 14 283 7 117 19 475 6 189 14 517 5 186CJJ81176_0827 dapA dihydrodipicolinate synthase 4 6 3 3 1 1 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0828 - 7-alpha-hydroxysteroid dehydrogenase 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0829 - hypothetical protein 15 53 9 31 13 69 6 33 10 329 6 190 11 347 9 276 11 343 8 217 9 307 6 200CJJ81176_0830 - metallo-beta-lactamase family protein 23 146 17 78 18 156 11 74 15 1115 12 799 18 1127 13 813 19 1191 12 1001 16 1054 13 1117CJJ81176_0831 nadE NAD synthetase 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 12 0 0 0 0CJJ81176_0832 lpxK tetraacyldisaccharide 4'-kinase 3 2 1 1 0 0 0 0 1 8 0 0 1 14 1 9 0 0 0 0 0 0 1 13CJJ81176_0833 thrC threonine synthase 4 4 3 3 1 1 1 2 1 19 1 35 1 10 1 7 1 16 1 67 1 13 1 67

CJJ81176_0834 kdsB3-deoxy-manno-octulosonate cytidylyltransferase 2 1 1 1 0 0 1 2 1 13 0 0 1 12 1 16 0 0 1 18 1 10 0 0

CJJ81176_0835 - hypothetical protein 31 308 28 313 27 321 21 295 27 1647 21 1177 25 1702 25 1284 25 1939 17 1452 24 2010 16 1489CJJ81176_0836 - amino acid-binding protein 14 55 7 32 9 56 5 23 7 401 4 245 9 463 11 314 10 623 8 415 9 618 7 410CJJ81176_0837 fliP flagellar biosynthesis protein FliP 55 579 4 4 45 665 0 0 48 8104 0 0 49 8245 0 0 46 6164 0 0 39 5702 0 0

CJJ81176_0838 glmU

bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0839 coaBCbifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1 2 1 1 1 1 0 0 0 0 0 0 0 0 1 14 0 0 1 12 0 0 1 13

CJJ81176_0840 - hypothetical protein 11 21 6 12 9 27 2 4 6 100 4 76 7 116 4 62 3 102 1 24 3 134 2 32CJJ81176_0841 uppS undecaprenyl diphosphate synthase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0842 - A24 family peptidase 14 54 11 41 12 57 6 33 13 331 10 187 12 310 9 160 12 297 6 204 10 319 7 256CJJ81176_0843 - hypothetical protein 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0844 truA tRNA pseudouridine synthase A 18 74 13 65 16 61 9 58 11 202 10 204 13 273 9 204 13 214 6 192 7 170 6 232CJJ81176_0845 ilvA threonine dehydratase 37 367 25 329 28 370 22 306 25 1270 20 814 22 1162 21 702 23 954 14 586 19 971 15 707CJJ81176_0846 - CoA-binding domain-containing protein 20 61 13 31 15 65 10 23 12 340 8 220 10 352 8 217 9 198 5 107 6 177 2 116

CJJ81176_0847 - hypothetical protein 6 21 3 8 5 26 1 3 4 85 2 29 4 74 3 62 4 138 1 165 2 144 2 108CJJ81176_0848 trmA tRNA (uracil-5-)-methyltransferase 40 113 20 50 27 143 10 51 17 673 9 530 17 705 11 813 22 760 8 867 15 735 6 764CJJ81176_0849 - Na+/H+ antiporter family protein 67 325 36 211 58 353 33 207 34 1374 24 1022 35 1452 20 949 36 1388 18 1224 27 1333 19 1066CJJ81176_0850 - short chain dehydrogenase/reductase 22 109 12 56 20 115 10 58 15 556 7 315 12 540 7 292 14 601 7 378 10 608 5 224CJJ81176_0851 - ankyrin repeat-containing protein 30 73 20 59 22 73 12 61 8 310 3 119 11 329 9 185 11 261 6 171 11 355 4 138

CJJ81176_0852 acnBbifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 4 5 5 9 1 2 3 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0853 ogtmethylated-DNA--protein-cysteine S-methyltransferase 19 53 11 22 13 64 6 19 11 180 5 103 7 141 5 59 15 252 6 143 11 264 7 135

CJJ81176_0854 - hypothetical protein 5 9 4 5 3 6 1 4 3 108 3 45 3 39 2 38 3 50 1 58 2 33 0 0CJJ81176_0855 metS methionyl-tRNA synthetase 3 3 1 2 4 8 2 4 4 55 2 17 2 31 1 9 2 25 1 31 2 38 1 19CJJ81176_0856 - hypothetical protein 1 1 1 2 0 0 0 0 1 17 1 17 0 0 1 7 1 9 1 12 1 23 1 13CJJ81176_0857 fbp fructose-1,6-bisphosphatase 1 2 1 3 0 0 1 2 0 0 1 10 1 19 2 31 1 17 1 34 1 10 1 30

CJJ81176_0858 mobBmolybdopterin-guanine dinucleotide biosynthesis protein MobB 3 7 1 4 2 10 1 3 2 42 0 0 3 39 2 31 2 35 1 12 2 48 1 19

CJJ81176_0859 - soluble lytic murein transglycosylase 31 52 7 14 26 57 2 8 12 206 0 0 10 170 1 10 15 236 1 12 13 203 2 32CJJ81176_0860 - YGGT family protein 11 16 1 2 3 10 0 0 3 28 1 8 2 29 2 17 5 42 0 0 2 35 0 0CJJ81176_0861 gltX-1 glutamylglutaminyl-tRNA synthetase 2 7 1 1 1 1 1 2 2 26 1 43 1 17 1 29 0 0 1 34 0 0 1 13CJJ81176_0862 - Ser/Thr protein phosphatase family protein 31 1286 18 7469 21 1328 8 7221 14 586 11 2368 12 476 9 2395 16 6678 5 9013 11 6541 5 11286CJJ81176_0863 psd phosphatidylserine decarboxylase 3 3 2 2 0 0 0 0 0 0 0 0 0 0 1 10 0 0 1 12 0 0 0 0

CJJ81176_0864 FlhB domain-containing protein 4 10 1 3 4 17 2 5 3 79 1 10 2 72 1 12 1 13 0 0 3 30 0 0CJJ81176_0865 - hypothetical protein 41 361 29 417 34 427 23 412 29 1781 18 1412 20 1621 18 1596 29 1188 13 668 23 1161 11 612CJJ81176_0866 - major facilitator family protein 53 284 41 237 42 309 22 206 31 809 15 375 29 871 22 478 32 1031 13 482 22 907 13 318CJJ81176_0867 - hypothetical protein 8 15 7 11 4 7 3 6 4 42 0 0 4 56 1 7 3 24 2 27 1 13 2 24CJJ81176_0868 - hypothetical protein 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0869 hemL glutamate-1-semialdehyde aminotransferase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0870 - hypothetical protein 6 7 5 6 1 2 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0871 folD

bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0872 lepB signal peptidase I 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0873 moeA molybdopterin biosynthesis MoeA protein 12 20 0 0 8 18 0 0 9 93 0 0 3 33 0 0 7 68 0 0 2 20 0 0

CJJ81176_0874 murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 3 1 1 1 3 0 0 0 0 0 0 1 10 1 7 1 11 0 0 2 23 0 0

CJJ81176_0875 fspA flagellar secreted protein 11 30 7 19 13 36 7 17 8 110 3 37 5 83 7 76 10 134 2 49 5 109 6 94CJJ81176_0876 - integral membrane protein 24 85 15 49 19 97 10 44 16 503 8 326 13 534 10 373 16 466 9 354 14 449 8 308

CJJ81176_0877 pabApara-aminobenzoate synthase glutamine amidotransferase, component II 16 29 9 12 6 21 6 13 7 104 4 47 6 101 3 36 5 105 2 46 3 81 1 16

CJJ81176_0878 pabBpara-aminobenzoate synthase glutamine amidotransferase, component I 57 314 32 243 40 374 22 257 28 1510 22 958 32 1528 23 930 35 1463 18 870 26 1457 19 728

CJJ81176_0879 -phage integrase family site specific recombinase 9 9 4 5 2 3 0 0 0 0 0 0 0 0 0 0 1 8 0 0 2 28 0 0

CJJ81176_0880 dsbA thiol:disulfide interchange protein DsbA 18 43 6 15 15 51 4 12 8 246 5 167 7 219 3 143 8 283 4 299 6 274 5 224CJJ81176_0881 dsbB putative disulfide oxidoreductase 41 244 29 135 36 238 23 122 26 807 13 264 25 835 15 264 26 880 13 439 21 879 13 510CJJ81176_0882 - arylsulfate sulfotransferase, degenerate 74 533 58 357 63 612 43 340 53 2225 40 1343 47 2161 39 1382 47 2990 29 2316 43 3079 30 2148CJJ81176_0883 - thiol:disulfide interchange protein DsbA 28 185 19 152 21 204 13 145 17 830 11 328 14 788 9 264 19 798 8 320 13 715 6 227CJJ81176_0884 - cytochrome c family protein, degenerate 19 122 13 64 16 132 9 59 9 524 7 291 7 548 7 307 13 467 8 357 6 487 6 310CJJ81176_0885 - cytochrome C 20 246 13 165 18 277 13 152 10 1233 8 455 9 1208 9 480 13 747 7 226 11 654 6 159CJJ81176_0886 - hypothetical protein 1 3 1 3 1 1 1 2 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0887 - putative periplasmic protein 13 24 4 9 9 22 2 5 3 64 3 35 4 54 1 12 7 85 1 21 1 35 0 0CJJ81176_0888 - hypothetical protein 10 22 5 11 6 27 2 7 5 87 0 0 3 56 0 0 3 46 1 12 2 51 2 22CJJ81176_0889 - hypothetical protein 2 2 0 0 1 1 0 0 0 0 0 0 1 10 0 0 0 0 0 0 1 10 0 0CJJ81176_0890 flhA flagellar biosynthesis protein FlhA 92 349 5 8 72 358 6 16 87 3486 1 8 76 3575 1 7 72 1882 1 24 55 2081 1 35CJJ81176_0891 - RrF2 family protein, putative 17 54 1 1 15 68 0 0 12 431 1 8 13 445 1 7 7 126 0 0 6 144 0 0CJJ81176_0892 rpsO 30S ribosomal protein S15 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0893 - cell division protein FtsK, putative 8 12 8 10 3 6 1 3 2 255 2 255 2 213 2 321 5 249 2 198 3 241 3 391CJJ81176_0894 flgL lagellar hook-associated protein FlgL 13 32 7 27 5 18 4 25 3 79 2 82 4 79 3 67 3 54 2 204 1 38 4 237CJJ81176_0897 - ABC transporter, ATP-binding protein 39 218 17 154 29 280 14 166 21 854 12 305 18 823 13 300 27 831 15 369 21 816 13 308CJJ81176_0898 - sensor histidine kinase 31 106 18 62 20 90 10 43 12 393 8 179 15 428 7 160 13 375 5 180 12 400 9 178CJJ81176_0899 - DNA-binding response regulator 20 55 7 14 13 43 4 15 8 155 3 45 9 209 1 17 10 330 2 85 5 281 4 119CJJ81176_0900 serA D-3-phosphoglycerate dehydrogenase 31 75 25 56 21 68 16 41 12 295 5 101 14 285 8 124 14 308 8 192 9 259 6 132

CJJ81176_0901 - hypothetical protein 15 70 7 62 11 75 4 53 7 127 4 60 4 130 4 62 6 66 0 0 2 35 1 16CJJ81176_0902 rpsA 30S ribosomal protein S1 7 7 3 9 1 2 2 11 0 0 1 27 1 10 1 19 0 0 0 0 0 0 1 11

CJJ81176_0903 ispH4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 2 2 2 0 0 0 0 1 8 1 19 0 0 1 12 0 0 1 15 0 0 1 32

CJJ81176_0904 aroA3-phosphoshikimate 1-carboxyvinyltransferase 1 1 1 1 0 0 0 0 1 9 0 0 0 0 0 0 0 0 1 21 0 0 0 0

CJJ81176_0905 pheT phenylalanyl-tRNA synthetase subunit beta 10 14 6 8 1 3 3 5 0 0 2 21 2 23 4 36 1 11 1 24 0 0 3 57CJJ81176_0906 pheS phenylalanyl-tRNA synthetase subunit alpha 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0907 - HIT family protein 7 107 7 43 7 132 7 48 7 442 5 148 7 461 6 160 5 500 4 198 4 474 2 210

CJJ81176_0908 thiJ4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 15 97 11 55 12 80 7 55 10 456 8 330 6 318 5 278 7 373 8 381 7 428 6 375

CJJ81176_0909 - hypothetical protein 8 20 3 4 8 25 1 3 3 60 0 0 3 48 1 9 4 54 1 18 3 51 1 16

CJJ81176_0910 -His/Glu/Gln/Arg/opine amino acid ABC transporter permease 21 83 14 40 15 84 8 30 9 527 5 153 9 443 5 176 12 412 7 229 11 492 4 186

CJJ81176_0911 -amino acid ABC transporter, ATP-binding protein 14 43 10 23 11 40 7 20 7 130 3 35 9 143 3 36 7 83 3 40 5 89 2 22

CJJ81176_0912 - amino acid carrier protein 41 126 19 72 31 141 13 67 22 1312 11 820 18 1348 13 939 16 680 10 598 15 646 10 507CJJ81176_0913 - RNA methyltransferase 16 70 13 58 14 90 10 97 8 268 5 282 8 294 5 386 8 109 4 88 3 119 4 116CJJ81176_0914 alr alanine racemase 4 14 3 15 2 15 2 15 2 57 2 35 2 37 2 35 2 19 2 34 1 20 1 32

CJJ81176_0915 -affects flagellin glycosylation to alter bacterial motility 5 3 1 1 0 0 0 0 1 15 1 19 1 25 1 21 0 0 1 18 0 0 1 13

CJJ81176_0916 - hypothetical protein 36 1227 29 982 32 1241 23 950 22 3424 16 1803 22 3422 20 1762 25 2497 15 1843 22 2382 18 1872CJJ81176_0917 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0918 - hypothetical protein 7 8 4 5 1 2 1 2 2 21 2 17 1 14 1 10 1 22 0 0 1 13 1 11CJJ81176_0919 - SCO1/SenC family protein 3 4 3 5 1 1 2 4 1 13 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_0920 cysK cysteine synthase A 3 3 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0921 ciaB invasion antigen B 46 200 31 358 33 199 18 386 20 575 11 445 18 443 12 481 20 678 7 320 16 905 7 302CJJ81176_0922 - thioesterase family protein 12 50 9 30 10 58 3 20 9 198 4 64 9 182 4 83 6 157 2 76 5 132 1 35CJJ81176_0923 - hypothetical protein 8 20 6 18 5 17 4 15 5 57 2 19 5 60 1 9 7 113 3 49 6 124 4 67CJJ81176_0924 cstA carbon starvation protein A 94 722 75 845 76 762 56 844 54 2972 35 1537 52 2781 39 1642 59 3314 36 2246 42 3961 31 2210CJJ81176_0925 prsA ribose-phosphate pyrophosphokinase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_0926 -amino acid ABC transporter, permease protein PEB1 24 57 12 23 19 48 10 21 13 151 4 37 8 136 3 28 7 90 3 67 7 106 3 62

CJJ81176_0927 -amino acid ABC transporter, permease protein PEB1 18 31 8 9 15 34 3 7 6 119 1 10 7 101 1 10 6 91 0 0 4 81 1 11

CJJ81176_0928 pebAbifunctional adhesin/ABC transporter aspartate/glutamate-binding protein 17 42 6 22 13 47 3 23 13 267 2 47 9 232 3 47 6 80 1 40 4 71 2 30

CJJ81176_0929 pebCamino acid ABC transporter, ATP-binding protein PEB1 15 51 9 17 15 66 4 12 14 267 6 80 9 201 5 93 13 404 5 165 11 525 5 138

CJJ81176_0930 cheR chemotaxis protein methyltransferase CheR 22 172 18 273 17 203 11 275 16 1429 8 3111 12 1408 12 2809 14 957 7 1876 11 1021 7 1754CJJ81176_0931 cheB protein-glutamate methylesterase CheB 10 22 1 2 7 28 1 3 2 45 0 0 5 81 0 0 3 76 0 0 4 79 0 0CJJ81176_0932 rpiB ribose 5-phosphate isomerase B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0934 apt adenine phosphoribosyltransferase 3 4 1 1 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0935 - DedA family protein 4 4 4 4 0 0 0 0 0 0 0 0 1 8 0 0 0 0 1 12 0 0 1 13CJJ81176_0936 - leucyl aminopeptidase 2 2 2 2 0 0 0 0 0 0 1 16 0 0 1 7 0 0 1 15 0 0 0 0CJJ81176_0937 EngD GTP-dependent nucleic acid-binding protein 4 6 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0938 argH argininosuccinate lyase 22 38 7 9 9 37 4 8 8 142 2 19 5 95 3 29 7 96 1 15 5 89 1 11CJJ81176_0939 pckA phosphoenolpyruvate carboxykinase 2 10 1 1 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_0940 - oxaloacetate decarboxylase, alpha subunit, 7 6 2 3 1 2 0 0 2 26 1 8 1 10 0 0 1 6 1 12 2 33 1 16CJJ81176_0941 - sodium transporter, putative 48 211 30 126 36 219 20 113 29 732 17 356 25 701 18 286 31 847 14 296 23 727 12 216CJJ81176_0942 - sodium transporter, putative 14 32 9 17 6 24 6 20 7 98 3 39 5 66 4 66 4 33 2 40 4 53 3 76CJJ81176_0943 atpE F0F1 ATP synthase subunit C 1 1 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0945 - hypothetical protein 2 5 1 2 2 10 1 2 1 25 1 10 0 0 1 7 1 19 0 0 1 20 1 13CJJ81176_0946 - hypothetical protein 4 19 2 5 3 22 1 4 3 125 3 107 4 110 2 66 3 118 2 92 3 99 2 89CJJ81176_0947 - hypothetical protein 6 6 2 3 0 0 1 3 1 8 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_0948 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0949 - hypothetical protein 32 230 22 147 28 235 15 131 22 974 13 527 20 900 18 576 22 666 10 510 21 776 12 631CJJ81176_0950 - hypothetical protein 20 101 11 91 15 121 9 82 7 543 5 336 6 556 6 326 12 721 9 534 11 781 7 564CJJ81176_0951 - hypothetical protein 8 49 6 24 6 41 5 32 6 161 4 72 7 186 3 62 5 118 2 37 4 81 2 57CJJ81176_0952 - hypothetical protein 41 227 30 84 36 203 22 84 24 713 15 344 25 722 16 343 26 760 12 409 21 907 12 380CJJ81176_0953 - hypothetical protein 9 15 4 5 5 21 2 5 5 129 2 16 3 97 3 33 3 68 2 31 3 53 1 19CJJ81176_0954 - hypothetical protein 20 88 14 62 19 114 10 54 14 316 6 74 11 316 6 74 13 842 3 391 10 803 5 359

CJJ81176_0955 aas2-acyl-glycerophospho-ethanolamine acyltransferase 109 412 63 264 89 431 40 260 62 1376 31 598 58 1342 34 581 72 1663 24 613 52 1617 23 564

CJJ81176_0956 - hypothetical protein 4 6 4 5 1 2 1 2 1 8 0 0 1 8 0 0 1 6 0 0 0 0 0 0CJJ81176_0964 - His/Glu/Gln/Arg/opine ABC transporter 30 70 13 29 20 71 7 20 11 223 6 74 13 252 5 59 13 143 2 43 7 152 3 35CJJ81176_0965 - permease, putative 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0966 secA preprotein translocase subunit SecA 3 2 0 0 0 0 2 3 1 13 1 23 0 0 1 9 1 24 1 34 1 28 0 0CJJ81176_0967 lolA outer-membrane lipoprotein carrier protein 4 6 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0968 - hypothetical protein 22 73 12 41 16 95 9 37 9 280 6 103 9 271 6 95 8 349 5 88 7 378 3 43CJJ81176_0969 - hypothetical protein 7 28 5 24 2 57 1 39 2 76 2 43 3 130 1 74 1 41 2 31 1 56 2 62CJJ81176_0970 - putative lipoprotein 25 65 13 40 14 59 8 29 13 677 7 188 11 573 8 179 11 784 7 296 8 694 5 181CJJ81176_0971 - carbon-nitrogen family hydrolase 2 1 1 1 1 1 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 1 11CJJ81176_0972 - cation efflux family protein 20 49 12 22 17 52 5 21 10 314 6 126 11 335 8 136 12 445 5 198 8 441 5 165CJJ81176_0973 - peptidyl-arginine deiminase family protein 5 6 3 5 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0974 - putative lipoprotein 6 12 2 2 5 15 0 0 1 9 0 0 3 39 1 7 4 65 0 0 3 68 1 11CJJ81176_0975 - membrane protein, putative, degenerate 47 362 37 367 42 396 20 390 30 1047 18 672 32 1164 21 692 29 1020 14 622 21 988 17 567

CJJ81176_0976 purH

bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 47 520 24 295 36 523 16 260 27 1374 17 490 26 1563 12 518 23 792 12 433 12 808 10 432

CJJ81176_0977 - DnaJ domain-containing protein 6 15 2 5 2 17 1 2 1 15 1 8 1 19 0 0 1 14 0 0 1 23 0 0CJJ81176_0978 purL phosphoribosylformylglycinamidine synthase 42 328 21 280 28 345 18 278 29 4074 18 1964 26 4353 16 2050 27 1739 12 943 16 1959 11 1139CJJ81176_0979 trmE tRNA modification GTPase TrmE 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0980 - hypothetical protein 5 18 1 3 4 24 2 8 4 129 0 0 4 145 0 0 2 102 0 0 3 84 2 22CJJ81176_0981 - putative inner membrane protein translocase 2 3 2 5 2 3 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0982 - hypothetical protein 6 9 4 7 3 5 2 4 1 17 2 23 2 17 3 40 0 0 1 15 0 0 0 0CJJ81176_0983 rnpA ribonuclease P protein component 2 1 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 10 0 0CJJ81176_0984 rpmH 50S ribosomal protein L34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0985 - acetyltransferase 12 60 6 41 9 71 3 43 6 261 5 122 7 256 5 119 5 148 3 116 5 177 3 89CJJ81176_0986 - hypothetical protein 10 17 3 5 5 12 0 0 1 8 1 8 1 8 1 7 3 76 0 0 2 56 1 16CJJ81176_0987 - hypothetical protein 1 1 2 2 0 0 0 0 0 0 0 0 1 17 0 0 0 0 0 0 0 0 1 19CJJ81176_0988 - thioesterase family protein 6 8 3 3 4 8 2 4 1 36 1 10 1 39 0 0 0 0 0 0 1 15 0 0CJJ81176_0990 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0991 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0992 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0993 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_0995 - methyltransferase, putative 27 189 19 138 22 198 14 138 19 637 12 270 19 645 11 200 14 609 9 375 15 669 11 469CJJ81176_0996 - hypothetical protein 17 66 0 0 12 71 0 0 10 287 0 0 10 300 0 0 15 288 0 0 10 317 0 0CJJ81176_0997 - putative lipoprotein 3 4 2 2 2 5 0 0 3 34 0 0 2 21 0 0 2 36 0 0 2 33 0 0CJJ81176_0998 - thermonuclease family protein 25 167 15 71 23 211 12 69 15 569 8 435 14 536 8 537 14 582 6 482 11 636 6 429CJJ81176_0999 pepD aminoacyl-histidine dipeptidase 38 734 26 962 28 838 21 950 21 3673 17 4191 22 3503 16 4279 28 3251 17 2288 25 3335 16 2310CJJ81176_1000 cjaB CjaB protein 31 98 19 35 20 76 12 31 18 376 8 120 14 343 9 135 17 343 5 104 14 307 5 103CJJ81176_1001 cjaA CjaA protein 29 82 8 22 20 75 3 23 10 125 2 49 7 126 3 59 12 116 1 18 7 91 3 73CJJ81176_1002 jlpA surface-exposed lipoprotein 21 77 13 55 17 77 11 50 10 405 4 157 9 387 4 145 13 223 2 46 8 238 3 73CJJ81176_1003 - hypothetical protein 27 153 20 108 19 171 12 103 19 550 9 237 13 457 9 242 10 200 5 79 9 215 6 135CJJ81176_1004 hipO hippurate hydrolase 37 230 27 127 34 258 21 130 25 883 15 414 25 962 18 509 30 1001 15 497 22 1016 15 591CJJ81176_1005 - hypothetical protein 25 170 16 109 18 159 14 111 12 497 8 297 12 494 10 338 12 658 11 436 12 641 12 469CJJ81176_1006 - hypothetical protein 15 72 11 22 14 63 7 27 10 414 4 177 7 356 6 167 11 367 6 177 9 291 8 192CJJ81176_1007 - hypothetical protein 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 2 19 0 0 0 0 0 0CJJ81176_1008 - hypothetical protein 15 97 7 66 14 98 9 81 8 166 4 49 7 172 5 72 6 113 1 24 3 101 3 49CJJ81176_1009 - iron-sulfur cluster-binding protein 6 15 7 12 2 14 1 2 1 38 1 14 1 33 1 24 1 31 0 0 1 20 0 0CJJ81176_1010 hemN coproporphyrinogen III oxidase 3 3 2 2 0 0 1 2 0 0 1 8 0 0 1 9 0 0 0 0 0 0 1 19CJJ81176_1011 - hypothetical protein 1 5 2 6 1 5 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1012 argF ornithine carbamoyltransferase 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1013 hemB delta-aminolevulinic acid dehydratase 1 3 1 3 1 3 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1014 ribA GTP cyclohydrolase II 1 1 1 1 2 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1015 gidB methyltransferase GidB 11 122 9 152 9 137 7 156 8 595 7 478 6 573 7 566 9 245 6 201 7 243 5 213CJJ81176_1016 - hypothetical protein 23 54 14 30 10 42 6 14 10 208 8 97 10 184 4 62 10 316 5 128 8 281 6 105CJJ81176_1017 - hypothetical protein 53 569 43 351 44 606 37 390 35 1900 26 1205 34 2084 29 1410 35 1829 25 1367 33 2086 26 1363CJJ81176_1018 - LysR family transcriptional regulator 24 79 12 51 19 92 7 47 11 140 6 91 12 211 8 105 11 148 6 107 10 162 6 86CJJ81176_1019 rpoD RNA polymerase sigma factor RpoD 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1020 sixA phosphohistidine phosphatase SixA 9 80 8 54 9 83 6 64 5 448 5 336 6 349 7 352 5 417 5 488 5 418 6 510CJJ81176_1021 - rhomboid family protein 30 280 17 181 24 335 12 212 15 1187 10 721 17 1251 12 752 19 1514 10 1181 17 1622 12 1255

CJJ81176_1022 - hypothetical protein 2 3 2 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1023 - cell division protein FtsH, putative 12 16 5 7 2 7 3 13 1 9 2 16 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_1024 - MiaB-like tRNA modifying enzyme 10 13 10 20 2 6 2 11 2 17 1 8 1 8 0 0 1 6 0 0 0 0 0 0CJJ81176_1025 - mechanosensitive ion channel family protein 28 204 19 196 10 152 9 176 12 851 6 596 11 885 6 625 11 390 7 262 9 388 6 291CJJ81176_1026 aroB 3-dehydroquinate synthase 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1027 - TrkA domain-containing protein 62 462 45 357 48 459 26 292 39 1747 25 1032 41 1911 29 1253 44 1138 17 546 37 1201 16 707CJJ81176_1028 tgt queuine tRNA-ribosyltransferase 14 27 6 15 10 24 2 10 8 72 2 17 4 54 2 16 8 80 2 34 4 48 2 24CJJ81176_1029 - hypothetical protein 13 78 10 54 11 70 7 51 7 380 7 210 10 451 5 212 9 589 5 217 7 629 5 302CJJ81176_1031 - hypothetical protein 6 19 3 4 5 11 1 2 4 96 1 33 4 87 1 17 4 121 1 12 3 56 1 16

CJJ81176_1032 -CcmF/CcyK/CcsA family cytochrome c biogenesis protein 12 75 6 63 2 74 4 59 1 210 1 249 2 203 2 255 2 293 1 299 2 327 1 254

CJJ81176_1033 livFhigh affinity branched-chain amino acid ABC transporter, ATP-binding protein 7 16 4 8 4 11 2 4 1 25 1 14 2 21 0 0 2 20 0 0 0 0 0 0

CJJ81176_1034 livGhigh affinity branched-chain amino acid ABC transporter, ATP-binding protein 6 16 3 10 4 15 2 5 4 78 1 8 5 54 2 16 2 33 0 0 2 58 0 0

CJJ81176_1035 livMhigh affinity branched-chain amino acid ABC transporter, permease protein 9 14 8 13 4 13 1 2 3 51 1 8 3 85 1 7 3 35 1 15 1 18 0 0

CJJ81176_1036 livHhigh affinity branched-chain amino acid ABC transporter, permease protein 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1037 -high affinity branched-chain amino acid ABC transporter, periplasmic 5 22 1 6 3 21 1 6 2 181 1 27 1 182 1 33 1 85 0 0 1 84 1 30

CJJ81176_1038 -high affinity branched-chain amino acid ABC transporter, periplasmic 7 10 2 2 3 5 0 0 5 89 1 14 5 68 1 10 3 69 0 0 3 94 0 0

CJJ81176_1039 - cytochrome c family protein 15 44 4 10 7 36 4 15 10 395 4 91 8 368 5 53 10 258 2 67 7 236 2 30CJJ81176_1040 - porin domain-containing protein 5 12 3 6 4 12 2 6 2 36 1 17 3 35 2 24 1 38 1 43 4 91 1 13CJJ81176_1041 - hypothetical protein 28 165 13 98 22 168 6 78 10 520 9 309 12 451 5 214 10 563 5 308 7 585 7 372CJJ81176_1042 asd aspartate-semialdehyde dehydrogenase 1 1 2 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1043 flgS DNA-binding response regulator 29 61 2 3 23 66 0 0 19 841 3 23 23 860 2 21 19 611 0 0 17 593 0 0CJJ81176_1044 flgQ hypothetical protein 13 22 2 2 6 23 1 2 5 151 1 8 5 161 0 0 4 140 0 0 2 94 0 0CJJ81176_1045 flgP putative lipoprotein 5 15 0 0 5 18 0 0 5 146 0 0 5 174 0 0 4 98 0 0 4 127 0 0CJJ81176_1046 gyrA DNA gyrase subunit A 5 14 4 6 3 9 1 2 2 51 2 39 2 45 2 40 3 65 2 40 2 79 1 11CJJ81176_1047 ctsW transformation system protein 15 75 10 30 12 79 8 40 7 176 6 120 8 227 6 128 8 217 3 79 8 193 4 116CJJ81176_1048 mapA outer membrane liproprotein MapA 23 98 9 41 12 103 7 38 11 369 5 122 7 343 5 116 7 330 2 137 8 362 4 197CJJ81176_1049 lepA GTP-binding protein LepA 27 109 19 70 19 90 10 48 12 253 5 70 8 186 5 88 10 142 4 88 9 198 5 119CJJ81176_1050 - hypothetical protein 28 139 17 119 21 167 7 124 14 488 11 350 13 443 9 261 13 430 7 217 10 378 5 119CJJ81176_1051 - hypothetical protein 11 20 3 3 8 17 2 4 7 72 0 0 3 27 0 0 5 68 2 31 3 53 1 11CJJ81176_1052 - AcrB/AcrD/AcrF family protein 85 312 53 140 69 337 35 134 48 1439 34 538 49 1615 33 785 53 1608 26 604 45 1528 31 761CJJ81176_1053 - adenylosuccinate lyase 22 71 17 54 16 78 9 45 12 268 5 97 9 223 6 129 10 98 2 37 5 91 1 32CJJ81176_1054 - arginyl-tRNA-protein transferase 19 91 9 24 14 74 6 16 12 389 5 109 13 465 6 183 9 371 2 37 8 345 4 143CJJ81176_1055 - hypothetical protein 3 4 1 1 3 10 0 0 1 13 0 0 1 25 0 0 1 22 0 0 1 23 1 11CJJ81176_1056 accC-1 acetyl-CoA carboxylase subunit A 59 363 29 139 54 381 25 168 35 1206 18 521 35 1247 19 597 38 1352 17 696 32 1440 14 658CJJ81176_1057 ftsW cell cycle protein FtsW 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1058 murG

undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1059 - hypothetical protein 9 21 4 5 8 28 0 0 4 42 1 12 2 27 0 0 2 66 1 24 1 66 1 11CJJ81176_1060 - putative transmembrane transport protein 10 134 5 84 5 138 4 74 4 471 4 198 4 525 3 221 5 367 3 201 4 375 3 216CJJ81176_1061 - putative transmembrane transport protein 27 393 20 299 18 424 14 285 14 1399 11 1140 16 1516 12 1310 17 1292 9 876 16 1452 9 1157CJJ81176_1062 - hypothetical protein 42 165 30 101 37 199 23 99 24 733 15 305 23 726 16 286 31 757 14 479 23 705 16 356CJJ81176_1063 - AraC family transcriptional regulator 36 140 23 112 28 158 16 100 19 669 14 266 17 608 13 243 20 584 6 192 11 517 9 251CJJ81176_1064 - thiamine-phosphate pyrophosphorylase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1065 thiH thiamine biosynthesis protein ThiH 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1066 thiG thiazole synthase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1067 thiF thiamine biosynthesis protein ThiF 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1068 thiS thiamine biosynthesis protein ThiS 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1069 dapE succinyl-diaminopimelate desuccinylase 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1070 - amino acid transporter LysE 26 91 18 36 19 86 8 27 15 446 10 188 14 463 9 164 13 305 4 122 10 355 5 124CJJ81176_1071 - NAD-dependent deacetylase 17 59 10 23 12 57 5 19 11 304 6 99 12 267 7 86 10 164 5 95 9 188 3 65

CJJ81176_1072 mutSrecombination and DNA strand exchange inhibitor protein 4 6 4 6 4 7 4 8 0 0 0 0 2 21 1 7 1 16 0 0 1 10 1 11

CJJ81176_1073 - hypothetical protein 2 3 1 1 1 2 0 0 2 21 1 12 0 0 0 0 0 0 0 0 0 0 1 11CJJ81176_1074 murC UDP-N-acetylmuramate--L-alanine ligase 3 4 1 3 1 4 1 3 0 0 1 14 1 21 1 12 1 6 0 0 1 10 1 16

CJJ81176_1075 - putative integral membrane protein 111 930 72 580 99 981 54 522 72 4968 45 2250 68 4450 44 2210 73 5067 32 2444 62 4978 30 2285CJJ81176_1076 - carbon-nitrogen family hydrolase 7 12 3 3 3 8 0 0 2 30 0 0 4 50 1 7 1 20 1 12 1 28 1 13CJJ81176_1077 - exodeoxyribonuclease VII, small subunit 1 3 1 5 1 6 1 6 1 11 1 23 1 25 1 16 3 46 1 43 2 43 1 65CJJ81176_1078 guaB inosine 5'-monophosphate dehydrogenase 1 4 2 8 1 4 1 9 0 0 0 0 0 0 0 0 0 0 0 0 1 13 0 0CJJ81176_1079 gatA aspartyl/glutamyl-tRNA amidotransferase 2 3 3 4 1 5 2 4 1 9 0 0 1 12 0 0 0 0 0 0 1 15 0 0CJJ81176_1080 ileS isoleucyl-tRNA synthetase 0 0 2 2 2 3 1 2 1 11 1 23 1 14 1 17 0 0 0 0 0 0 0 0

CJJ81176_1081 -competence/damage-inducible domain-containing protein 40 256 24 117 38 241 21 94 28 1098 21 602 31 1135 17 581 34 1251 16 561 25 1140 15 505

CJJ81176_1082 - acetyltransferase 11 188 10 175 11 210 7 164 8 454 7 350 7 414 7 323 8 395 6 272 8 365 7 329CJJ81176_1083 - nitroreducatase family protein 13 86 9 56 12 91 7 55 7 473 8 359 9 418 7 304 10 548 5 284 10 504 6 248CJJ81176_1084 - nitroreductase family protein 31 204 18 71 29 247 9 57 17 698 14 404 19 769 12 307 19 689 9 430 18 798 12 316

CJJ81176_1085 pgsACDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 7 3 4 0 0 0 0 1 13 0 0 0 0 0 0 0 0 1 15 0 0 0 0

CJJ81176_1086 - membrane-associated zinc metalloprotease 20 214 9 799 13 254 5 987 13 325 3 593 10 349 6 740 10 1397 3 1867 7 2248 2 1333CJJ81176_1087 virK hypothetical protein 20 97 17 53 16 106 8 46 13 433 6 93 13 376 9 97 18 538 7 180 15 585 9 232CJJ81176_1088 rpsF 30S ribosomal protein S6 1 2 1 3 1 2 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1089 ssb single-stranded DNA-binding protein 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 24CJJ81176_1090 rpsR 30S ribosomal protein S18 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1091 lon ATP-dependent protease La 9 27 5 11 3 10 2 4 4 49 3 35 1 17 4 45 3 49 3 82 1 15 2 54CJJ81176_1092 - putative lipoprotein 3 4 2 5 0 0 1 2 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_1093 fliW flagellar assembly protein FliW 5 5 2 2 2 5 1 5 0 0 1 8 0 0 0 0 1 6 1 18 1 13 0 0CJJ81176_1094 proC pyrroline-5-carboxylate reductase 16 117 9 66 11 121 6 58 10 490 7 175 10 517 8 231 14 629 5 265 11 707 6 353CJJ81176_1095 ctsT transformation system protein 12 54 6 26 7 46 4 20 5 187 3 49 7 167 3 41 6 83 0 0 3 53 0 0CJJ81176_1096 - hypothetical protein 26 69 13 33 19 73 8 25 13 391 3 89 9 368 6 147 12 247 3 82 6 195 3 100CJJ81176_1097 - hypothetical protein 25 192 19 101 20 160 11 86 16 645 9 361 12 604 10 421 15 683 10 381 11 667 8 316CJJ81176_1098 hemD uroporphyrinogen-III synthase 4 7 5 5 2 3 2 3 1 9 2 31 1 8 0 0 2 24 1 21 0 0 0 0CJJ81176_1099 thiE thiamine-phosphate pyrophosphorylase 3 103 1 241 2 94 1 222 1 98 1 309 1 95 1 367 1 74 2 220 1 46 2 235CJJ81176_1100 thiD phosphomethylpyrimidine kinase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1101 - endonuclease III, putative 12 29 6 15 8 35 2 15 4 136 2 47 5 163 2 38 5 88 1 24 3 94 1 22CJJ81176_1102 - hypothetical protein 15 30 10 18 13 36 5 15 13 174 3 31 11 147 4 57 7 104 1 12 6 84 2 32CJJ81176_1103 mfd transcription-repair coupling factor 98 460 67 269 79 498 42 271 55 1826 35 913 50 1720 39 906 59 1887 29 995 47 1883 33 1133CJJ81176_1104 - hypothetical protein 8 35 6 22 7 35 3 14 5 119 3 80 5 110 3 55 6 101 1 12 3 51 1 30CJJ81176_1105 - M24/M37 family peptidase 41 329 32 234 31 348 26 230 23 1599 19 820 23 1665 19 823 22 1687 14 967 22 1860 15 1020CJJ81176_1106 folC folC bifunctional protein 12 16 7 9 3 4 2 4 5 93 3 51 3 52 4 60 3 44 3 55 3 43 3 70CJJ81176_1107 - hypothetical protein 38 107 20 54 27 85 13 46 11 189 6 74 9 223 4 72 11 205 3 122 6 139 5 151CJJ81176_1108 LptE putative lipoprotein 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1109 leuS leucyl-tRNA synthetase 6 7 2 2 0 0 0 0 1 8 0 0 0 0 1 10 0 0 0 0 0 0 0 0CJJ81176_1110 secF preprotein translocase subunit SecF 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1111 secD preprotein translocase subunit SecD 2 14 1 1 1 3 1 2 1 47 1 21 1 54 1 35 1 39 0 0 0 0 1 16CJJ81176_1112 yajC preprotein translocase subunit YajC 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1113 cutE apolipoprotein N-acyltransferase 24 65 15 42 11 65 8 39 12 240 7 85 9 186 7 83 11 285 4 101 9 266 5 148CJJ81176_1114 metK S-adenosylmethionine synthetase 2 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1115 sstT serine/threonine transporter SstT 32 171 19 59 23 169 14 53 21 518 9 190 23 612 13 259 23 548 7 256 17 461 12 305CJJ81176_1116 pyrB aspartate carbamoyltransferase catalytic 3 4 2 3 4 7 0 0 3 45 0 0 4 41 1 7 0 0 0 0 0 0 0 0CJJ81176_1117 pepF oligoendopeptidase F 29 81 15 41 23 82 6 23 15 272 5 150 12 236 6 141 16 337 4 159 14 314 7 186CJJ81176_1118 - hypothetical protein 8 14 2 3 4 15 0 0 3 70 2 19 3 97 1 7 4 65 0 0 3 51 0 0CJJ81176_1119 - ATP-dependent DNA helicase UvrD 30 74 14 26 21 69 9 23 14 259 6 85 12 240 4 72 15 272 4 104 10 256 2 78CJJ81176_1120 truB tRNA pseudouridine synthase B 31 249 25 228 28 272 19 226 21 1059 16 756 19 1046 15 644 22 1006 11 577 20 1059 15 710CJJ81176_1121 csrA carbon storage regulator 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1122 ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1123 smpB SsrA-binding protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1124 - thioredoxin domain-containing protein 8 12 3 8 3 8 3 8 2 19 1 8 2 17 0 0 1 13 0 0 1 15 0 0CJJ81176_1125 - hypothetical protein 2 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0CJJ81176_1126 clpA ATP-dependent Clp protease 23 55 4 4 13 59 0 0 9 155 2 25 7 170 2 29 11 205 0 0 9 243 1 11CJJ81176_1127 aat leucyl/phenylalanyl-tRNA--protein transferase 13 41 4 9 10 40 3 8 7 187 3 45 7 211 4 55 7 312 2 52 6 261 5 81CJJ81176_1128 - methyl-accepting chemotaxis protein 38 288 22 200 34 332 10 181 18 1053 8 732 20 1048 7 761 25 1260 7 1013 20 1429 8 1168CJJ81176_1129 - MarC family integral membrane protein 32 375 20 233 30 370 17 257 21 1393 17 863 18 1373 18 726 23 979 12 1275 21 978 13 548CJJ81176_1130 msrB methionine sulfoxide reductase B 8 33 5 19 7 39 6 20 8 176 3 68 5 114 6 100 5 116 2 79 7 172 5 94CJJ81176_1131 - hypothetical protein 26 152 17 121 23 171 10 109 18 488 7 204 14 471 14 357 17 411 7 229 13 428 8 254CJJ81176_1132 pssA CDP-diacylglycerol--serine O- 4 6 3 5 2 4 1 2 2 17 1 8 1 12 1 9 1 6 0 0 1 13 1 11

phosphatidyltransferaseCJJ81176_1133 - phosphatidylserine decarboxylase-related 17 70 10 45 13 76 6 38 10 242 7 111 11 261 5 95 11 227 5 168 9 241 4 146CJJ81176_1134 ftsH cell division protein FtsH 5 4 0 0 1 2 0 0 2 38 0 0 1 29 0 0 1 6 0 0 0 0 0 0CJJ81176_1135 prmA ribosomal protein L11 methyltransferase 19 33 11 15 7 24 3 5 7 104 2 31 7 101 3 41 7 79 1 12 3 38 0 0CJJ81176_1136 cheY chemotaxis protein CheY 5 6 4 10 1 1 3 6 0 0 1 12 0 0 0 0 0 0 1 12 0 0 0 0CJJ81176_1137 pglG general glycosylation pathway protein 41 271 26 240 29 293 20 221 22 1174 12 868 17 1181 13 878 21 1367 12 1199 17 1361 11 1149CJJ81176_1138 pglF general glycosylation pathway protein 18 36 6 11 3 18 3 8 11 183 2 21 9 143 4 57 13 138 2 24 7 114 1 16CJJ81176_1139 pglE general glycosylation pathway protein 11 1118 4 1477 5 1042 4 1465 8 2208 2 4482 6 1888 1 4136 5 1701 2 3335 5 1505 2 2668CJJ81176_1140 pglD general glycosylation pathway protein 3 3 2 3 3 4 1 2 1 9 0 0 2 25 0 0 0 0 0 0 1 13 0 0CJJ81176_1141 pglC general glycosylation pathway protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1142 pglA general glycosylation pathway protein 8 10 3 5 3 5 1 2 3 30 2 23 2 19 2 17 1 11 1 67 2 28 2 148CJJ81176_1143 pglB general glycosylation pathway protein 14 14 6 7 3 7 1 2 1 11 1 14 1 14 0 0 3 19 0 0 0 0 1 11CJJ81176_1144 pglJ general glycosylation pathway protein 3 4 2 2 1 2 1 2 0 0 0 0 2 17 0 0 0 0 0 0 0 0 0 0CJJ81176_1145 pglI general glycosylation pathway protein 33 155 20 107 26 164 15 100 20 577 14 297 20 581 15 295 22 483 11 247 15 380 10 208CJJ81176_1146 pglH general glycosylation pathway protein 5 5 1 1 1 1 0 0 5 43 0 0 0 0 1 7 1 6 0 0 0 0 0 0CJJ81176_1147 wlaB ABC transporter, permease 16 31 9 11 4 21 4 8 4 62 3 33 3 58 2 22 3 19 0 0 2 28 0 0CJJ81176_1148 galE UDP-glucose 4-epimerase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1149 wlaX polysaccharide biosynthesis protein 26 194 21 150 24 193 12 125 17 539 7 225 14 478 12 328 14 658 12 503 11 482 10 558CJJ81176_1150 waaC lipopolysaccharide heptosyltransferase I 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1151 waaM lipid A biosynthesis lauroyl acyltransferase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1152 -lipooligosaccharide biosynthesis glycosyltransferase 41 149 17 36 36 168 11 40 29 1741 12 396 28 1586 19 433 34 1385 6 156 28 1229 7 143

CJJ81176_1153 - galactosyltransferase 31 278 20 192 23 300 14 172 17 1157 13 799 20 1170 14 692 22 1693 12 1230 15 1569 11 788CJJ81176_1154 - beta-1,4-N-acetylgalactosaminyltransferase 32 277 23 225 29 303 17 193 16 554 12 256 16 517 11 252 19 736 9 394 13 841 11 456CJJ81176_1155 - beta-1,3-galactosyltransferase 37 274 24 210 26 324 15 216 19 1070 15 624 19 1007 16 631 21 1283 11 1044 20 1270 11 820CJJ81176_1156 - beta-1,3-galactosyltransferase 34 527 31 376 31 559 22 380 21 2580 18 1492 22 2663 16 1432 27 2674 18 1568 21 2973 17 1640CJJ81176_1157 - alpha-2,3-sialyltransferase 31 576 14 378 25 636 11 365 18 2713 12 1620 17 2982 9 1712 21 3193 13 1806 17 3188 12 2409CJJ81176_1158 - sialic acid synthase 52 1282 43 1235 47 1359 43 1199 43 6692 36 5459 41 7145 37 5864 41 3866 27 2545 37 4187 33 2741CJJ81176_1159 - UDP-N-acetylglucosamine 2-epimerase 60 836 47 571 56 910 33 571 40 4261 36 2568 44 3974 38 2705 51 4741 30 2493 45 4810 33 2660CJJ81176_1160 - beta-1,4-N-acetylgalactosaminyltransferase 41 283 35 287 38 320 28 277 28 1197 19 851 27 1201 20 868 28 1078 13 665 22 1044 17 809CJJ81176_1161 - CMP-Neu5Ac synthetase 14 50 6 12 11 49 2 8 6 83 1 8 4 68 1 7 6 57 0 0 6 86 0 0CJJ81176_1162 - acetyltransferase 22 313 13 400 19 309 10 360 14 548 9 253 16 540 11 273 17 563 10 272 11 492 11 318

CJJ81176_1163 waaVlipooligosaccharide biosynthesis glycosyltransferase 21 120 15 101 15 130 10 90 12 469 7 181 12 474 7 128 10 415 4 238 9 395 6 278

CJJ81176_1164 waaF ADP-heptose--LPS heptosyltransferase II 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 12 0 0 0 0CJJ81176_1165 - LPS glycosyltransferase subfamily protein 49 482 36 215 36 515 24 187 39 3149 28 1057 35 2922 30 899 28 2529 20 870 30 2431 17 853CJJ81176_1166 gmhA-1 phosphoheptose isomerase 22 430 20 289 18 422 19 274 19 1698 15 979 17 1760 15 940 19 1684 12 1303 17 1825 15 1487

CJJ81176_1167 hldED,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase 3 7 2 4 1 5 2 4 1 45 1 21 1 54 1 7 0 0 0 0 0 0 0 0

CJJ81176_1168 waaD ADP-L-glycero-D-mannoheptose-6-epimerase 4 3 2 2 0 0 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 0 0CJJ81176_1169 - hydrolase, putative 12 158 11 143 8 178 7 139 7 834 7 935 7 786 7 876 7 840 6 1031 7 877 6 963CJJ81176_1170 cyf cytochrome c553 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1171 -cytochrome oxidase maturation protein, cbb3-type 2 4 2 2 1 3 0 0 1 60 1 19 1 103 1 28 1 98 1 12 1 96 1 32

CJJ81176_1172 - heavy metal translocating P-type ATPase 8 16 3 5 3 8 1 2 1 32 1 10 1 17 1 9 1 22 2 40 0 0 0 0CJJ81176_1173 rho transcription termination factor Rho 2 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1174 dnaX DNA polymerase III subunits gamma and tau 3 3 1 1 0 0 1 3 0 0 1 19 0 0 1 12 0 0 0 0 0 0 0 0CJJ81176_1176 - copper-translocating P-type ATPase 67 384 41 201 55 407 33 202 40 1962 24 804 39 1849 26 751 43 2057 21 1053 36 1901 22 1141CJJ81176_1177 - hypothetical protein 4 12 2 14 4 10 1 11 2 55 2 39 3 64 2 31 3 88 2 79 3 86 1 97CJJ81176_1178 - cation efflux family protein 14 38 8 14 12 50 3 11 13 367 6 144 10 327 6 169 11 422 6 171 10 466 5 140CJJ81176_1179 - hypothetical protein 17 340 13 260 12 407 10 321 12 1287 12 872 11 1404 11 859 13 917 9 696 11 988 10 629CJJ81176_1180 - hypothetical protein 20 228 14 179 19 228 8 147 12 1354 9 1224 12 1536 11 1228 12 2274 8 1217 13 2679 10 1325CJJ81176_1181 - hypothetical protein 42 499 35 384 39 588 26 383 29 3216 20 1766 26 2930 25 1922 31 3256 21 2609 30 3700 21 2426CJJ81176_1182 ldh L-lactate dehydrogenase 26 189 17 111 21 222 14 102 14 1030 13 684 15 1036 11 654 18 1196 12 876 16 1280 11 966CJJ81176_1183 - DedA family protein 41 357 35 224 38 374 27 244 28 1191 21 686 28 1263 20 681 33 1503 14 1059 23 1642 20 1246CJJ81176_1184 - hypothetical protein 5 34 7 15 5 35 4 14 5 136 2 33 5 141 4 64 4 112 4 95 3 119 2 67CJJ81176_1185 - hypothetical protein 80 1194 63 863 72 1175 48 811 55 4242 41 2671 54 3997 40 2514 59 5195 35 3195 46 5680 39 2612CJJ81176_1186 ppiB peptidyl-prolyl cis-trans isomerase B 14 95 8 53 10 101 4 40 9 408 3 152 8 416 5 193 8 337 3 323 7 436 4 267CJJ81176_1187 - hypothetical protein 27 125 12 45 22 135 6 45 14 348 2 45 15 302 5 71 14 234 1 24 11 248 2 57CJJ81176_1188 - SMR family multidrug efflux pump 15 105 10 103 13 133 7 102 7 316 2 80 9 370 3 131 7 154 1 18 4 137 1 11CJJ81176_1189 - SMR family multidrug efflux pump 9 44 5 54 4 38 3 38 1 181 2 173 2 207 1 131 7 354 2 183 4 314 3 254

CJJ81176_1190 argS arginyl-tRNA synthetase 1 2 1 4 1 2 1 6 0 0 0 0 0 0 1 7 1 9 0 0 0 0 0 0CJJ81176_1191 - twin arginine-targeting protein translocase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1192 gmk guanylate kinase 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1193 - hypothetical protein 6 8 2 2 2 7 1 2 3 36 1 8 2 23 1 9 1 13 1 40 0 0 0 0CJJ81176_1194 fliR flagellar biosynthesis protein FliR 47 210 3 9 36 233 3 5 44 2202 0 0 37 2173 0 0 33 1297 0 0 25 1394 0 0CJJ81176_1195 - ABC transporter, ATP-binding protein 4 15 3 6 3 18 2 11 2 47 0 0 2 33 0 0 2 120 2 49 3 68 1 30CJJ81176_1196 tsf elongation factor Ts 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1197 rpsB 30S ribosomal protein S2 4 8 4 6 1 2 2 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1198 -cyclopropane-fatty-acyl-phospholipid synthase 37 725 32 1053 32 827 22 1141 23 2401 17 2691 21 2289 14 2502 25 1951 14 2877 22 2035 15 2685

CJJ81176_1199 petCubiquinol--cytochrome c reductase, cytochrome c1 subunit 6 7 2 3 2 3 1 2 1 9 0 0 1 12 0 0 1 8 0 0 0 0 0 0

CJJ81176_1200 petB ubiquinol--cytochrome c reductase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1201 petA ubiquinol--cytochrome c reductase 2 2 2 4 1 2 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1202 arsB arsenical pump membrane protein 31 97 17 57 23 104 11 51 15 312 7 175 8 277 7 126 15 414 6 247 10 406 8 275

CJJ81176_1203 gidAtRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 6 11 5 10 2 11 5 19 1 26 1 8 2 31 2 21 1 63 1 21 2 89 1 13

CJJ81176_1204 cetB methyl-accepting chemotaxis protein 5 6 1 1 2 5 0 0 1 13 0 0 1 29 0 0 0 0 0 0 1 13 0 0CJJ81176_1205 cetA methyl-accepting chemotaxis protein 9 10 5 6 4 6 2 4 3 30 1 12 1 10 0 0 3 28 1 21 1 10 1 27CJJ81176_1206 - methyl-accepting chemotaxis protein 30 469 27 527 26 539 21 509 24 1408 20 1129 20 1462 21 1042 18 1651 14 1321 14 1652 14 1298CJJ81176_1207 dctA C4-dicarboxylate transport protein 71 798 61 637 61 825 45 587 50 2960 39 2038 47 3046 48 2070 58 4546 41 3683 49 4296 42 3823CJJ81176_1208 - hypothetical protein 45 478 33 262 41 540 30 294 27 2618 18 2124 28 2790 22 2598 34 2414 18 2200 25 2562 18 2399CJJ81176_1209 - phosphate transporter family protein 56 412 51 474 52 425 38 463 41 1843 32 1430 39 1797 32 1472 35 1544 29 1611 30 1498 26 1492CJJ81176_1210 - dihydroorotase 4 38 2 10 4 48 1 13 2 130 1 49 2 143 1 40 2 90 1 40 1 94 1 67

CJJ81176_1211 gpsANAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1212 gatB aspartyl/glutamyl-tRNA amidotransferase 4 4 0 0 1 3 0 0 1 8 1 8 1 8 2 16 2 22 0 0 2 23 0 0CJJ81176_1213 luxS S-ribosylhomocysteinase 6 16 2 3 6 17 1 2 1 11 0 0 1 8 0 0 3 96 1 12 3 96 0 0CJJ81176_1214 - 2OG-Fe(II) oxygenase family oxidoreductase 40 440 34 299 36 426 30 300 31 1717 28 1020 28 1758 29 1008 32 1838 26 1047 30 2043 25 1009CJJ81176_1215 - NLPA family lipoprotein 37 470 29 256 29 416 22 237 24 1713 19 1430 22 1836 20 1475 22 1748 18 1230 21 1865 19 1325

CJJ81176_1216 metE5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 63 569 44 439 51 625 36 438 39 2709 25 2458 38 2655 32 2314 43 2752 28 2136 34 2904 28 1986

CJJ81176_1217 metF 5,10-methylenetetrahydrofolate reductase 24 288 21 199 21 334 17 219 20 1217 14 631 19 1307 15 811 18 1284 11 839 16 1402 13 796CJJ81176_1218 - hypothetical protein 6 8 0 0 2 3 0 0 3 26 1 10 1 10 2 17 1 61 1 31 1 73 1 19CJJ81176_1219 atpB F0F1 ATP synthase subunit A 5 6 4 8 2 5 2 11 1 28 1 41 1 21 1 55 1 16 2 58 1 15 2 81CJJ81176_1220 radA DNA repair protein RadA 35 131 16 75 27 137 11 70 14 611 5 253 19 711 7 302 21 628 5 293 13 687 6 267CJJ81176_1221 ftsY signal recognition particle-docking protein 3 4 1 1 1 3 0 0 0 0 1 12 0 0 0 0 0 0 0 0 0 0 1 11CJJ81176_1222 - putative lipoprotein 5 6 4 7 3 6 1 3 2 25 0 0 0 0 1 7 2 19 0 0 0 0 0 0CJJ81176_1223 - phosphodiesterase 16 26 3 4 7 20 2 4 7 113 2 17 4 72 2 17 8 116 2 24 5 119 1 11CJJ81176_1224 - DedA family protein 4 4 1 1 1 1 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1225 yihY YihY family protein 19 32 10 20 14 38 3 10 6 318 2 185 5 290 2 157 8 102 1 168 4 104 1 213CJJ81176_1226 glcD glycolate oxidase, subunit GlcD 2 3 1 2 1 2 1 2 0 0 0 0 1 8 0 0 0 0 1 12 0 0 0 0CJJ81176_1227 - hypothetical protein 4 5 0 0 0 0 1 2 0 0 1 10 0 0 0 0 1 8 0 0 0 0 0 0CJJ81176_1228 - M24/M37 family peptidase 3 3 0 0 0 0 1 2 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1229 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1230 - hypothetical protein 19 63 12 21 16 75 10 25 6 369 5 107 8 327 5 98 12 245 5 113 7 271 8 162CJJ81176_1231 ribE riboflavin synthase subunit alpha 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 13CJJ81176_1232 - hypothetical protein 12 21 5 6 7 22 2 4 6 104 4 47 7 136 4 59 6 71 2 37 3 48 1 35CJJ81176_1233 groES co-chaperonin GroES 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1234 groEL chaperonin GroEL 2 15 1 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1235 arsR sensor histidine kinase 28 404 12 355 22 424 9 346 17 981 10 923 17 974 8 790 15 878 7 598 11 895 5 594CJJ81176_1236 - DNA-binding response regulator 10 46 4 49 10 55 2 37 7 157 2 45 6 134 3 83 4 47 0 0 3 46 1 13CJJ81176_1237 - hemerythrin family non-heme iron protein 16 181 10 56 13 189 9 59 13 696 9 243 15 722 11 328 11 727 8 189 9 654 9 237CJJ81176_1238 - hypothetical protein 0 0 0 0 1 1 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0CJJ81176_1240 - sensor histidine kinase 11 12 3 3 0 0 0 0 0 0 0 0 1 8 1 7 3 19 0 0 0 0 0 0

CJJ81176_1241 DNA-binding response regulator 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1242 htrA protease DO 37 131 16 62 28 128 10 47 21 482 8 126 19 443 12 166 20 548 7 125 20 550 9 138CJJ81176_1243 dnaJ-1 co-chaperone protein DnaJ 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1244 hspR MerR family transcriptional regulator 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1245 - sodium/hydrogen exchanger family protein 34 153 17 56 27 198 9 48 15 478 5 185 14 500 6 229 20 499 4 107 15 444 6 135CJJ81176_1246 - hypothetical protein 2 12 1 4 1 12 1 4 4 113 3 52 3 105 3 62 3 74 2 107 2 66 2 105

CJJ81176_1247 - HAD-superfamily hydrolase, subfamily IA, 19 105 13 76 18 128 12 76 14 457 9 204 13 453 10 257 14 540 8 247 12 568 10 283CJJ81176_1248 glyS glycyl-tRNA synthetase subunit beta 4 4 2 3 1 2 2 3 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0CJJ81176_1249 - M24/M37 family peptidase 3 3 1 1 1 2 0 0 2 15 0 0 2 23 1 7 1 6 0 0 1 10 0 0CJJ81176_1250 - hypothetical protein 3 5 3 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1251 - Ppx/GppA family phosphatase 30 235 18 106 22 231 13 122 19 749 13 427 15 761 9 490 17 916 8 568 12 1004 6 397CJJ81176_1252 pdxJ pyridoxine 5'-phosphate synthase 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1253 pdxA4-hydroxythreonine-4-phosphate dehydrogenase 1 1 2 2 0 0 1 2 0 0 1 8 0 0 1 7 0 0 0 0 0 0 0 0

CJJ81176_1254 - hypothetical protein 13 69 12 44 10 45 7 38 5 1208 4 412 5 1377 6 364 7 2411 3 802 5 2864 5 804CJJ81176_1255 - putative periplasmic protein 14 74 8 52 12 81 5 41 12 378 10 153 12 374 9 131 14 453 7 207 10 461 8 200CJJ81176_1256 - transporter, putative 67 873 54 612 62 875 45 623 52 3216 41 2584 52 3426 46 2538 51 4117 37 3198 43 4344 43 2617CJJ81176_1257 - hypothetical protein 10 63 6 41 10 84 5 33 8 406 7 338 7 405 6 283 8 560 4 394 8 545 5 437CJJ81176_1258 hemE uroporphyrinogen decarboxylase 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1259 - radical SAM domain-containing protein 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1260 - hypothetical protein 56 174 33 114 40 191 20 100 25 580 18 307 23 560 20 330 27 760 14 464 17 689 12 380CJJ81176_1261 uvrC excinuclease ABC subunit C 84 995 47 526 68 1031 39 596 35 2711 27 2308 37 2850 28 2377 49 4263 25 2648 36 4400 29 2641CJJ81176_1262 - hypothetical protein 4 4 2 2 0 0 0 0 2 15 0 0 0 0 1 9 0 0 0 0 0 0 0 0CJJ81176_1263 - hypothetical protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1264 guaA GMP synthase 1 4 1 1 1 2 0 0 1 11 0 0 1 8 0 0 0 0 0 0 1 28 0 0CJJ81176_1265 - hypothetical protein 47 280 23 92 40 317 13 50 31 1662 10 365 31 1809 11 404 34 1194 5 201 23 1287 7 246CJJ81176_1266 purD phosphoribosylamine--glycine ligase 3 2 2 2 0 0 2 3 1 8 1 12 1 10 1 7 0 0 0 0 0 0 1 19CJJ81176_1267 - hypothetical protein 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1268 - organic solvent tolerance protein, putative 2 3 2 4 1 2 2 5 1 9 2 25 0 0 2 17 0 0 1 18 0 0 0 0CJJ81176_1269 pnp polynucleotide phosphorylase/polyadenylase 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1270 - hypothetical protein 4 10 2 3 3 9 2 4 2 25 0 0 2 35 0 0 2 25 1 15 1 10 1 13CJJ81176_1271 - hypothetical protein 10 41 6 17 6 32 4 16 5 123 1 31 4 103 1 45 4 82 1 43 2 46 1 51CJJ81176_1272 - hypothetical protein 30 163 25 112 28 167 17 99 18 647 13 365 19 629 16 402 23 1035 14 632 21 1247 19 564CJJ81176_1273 - multidrug resistance efflux transporter 45 1124 41 2100 40 1324 38 1916 37 2881 31 3044 30 2854 30 3028 30 1756 29 2145 26 1777 28 1956CJJ81176_1274 - low molecular weight phosphotyrosine protein 7 61 5 35 5 67 4 43 5 132 4 56 4 118 4 43 6 234 3 92 4 238 1 13CJJ81176_1275 porA major outer membrane protein 2 8 1 3 0 0 1 3 0 0 0 0 0 0 0 0 0 0 1 15 0 0 1 11CJJ81176_1276 dnaJ-2 chaperone protein DnaJ 18 89 6 20 9 95 5 29 7 361 3 43 4 273 3 50 4 198 1 21 4 139 2 32CJJ81176_1277 racR DNA-binding response regulator 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1278 racS sensor histidine kinase 0 0 0 0 0 0 0 0 0 0 1 12 1 17 1 22 1 8 0 0 0 0 0 0CJJ81176_1279 recR recombination protein RecR 8 17 3 9 3 14 2 8 2 36 0 0 2 27 0 0 3 35 1 12 2 28 1 11CJJ81176_1280 hydD hydrogenase maturation protease HydD 14 69 10 38 12 79 6 38 9 295 5 87 11 304 6 93 10 285 3 82 11 327 4 84CJJ81176_1281 hydC quinone-reactive Ni/Fe hydrogenase 21 89 18 52 18 84 8 37 12 282 7 140 9 287 6 160 15 304 5 134 10 271 5 113CJJ81176_1282 hydB quinone-reactive Ni/Fe-hydrogenase 58 311 42 202 43 334 34 202 33 926 19 659 26 1007 21 749 40 1144 17 1007 27 1173 20 1017CJJ81176_1283 hydA quinone-reactive Ni/Fe-hydrogenase 43 396 40 417 37 400 34 437 25 1227 24 1166 28 1228 22 1240 30 1419 24 1666 25 1490 23 1881

CJJ81176_1284 mnmC5-methylaminomethyl-2-thiouridine methyltransferase 48 237 34 165 42 235 27 191 29 771 16 441 18 674 19 426 28 707 12 409 20 634 12 275

CJJ81176_1285 - N-acetylmuramoyl-L-alanine amidase 5 4 3 4 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 11CJJ81176_1286 - 2-nitropropane dioxygenase family 1 2 1 2 0 0 0 0 1 9 2 16 1 12 0 0 1 6 0 0 0 0 0 0CJJ81176_1287 tyrS tyrosyl-tRNA synthetase 5 11 5 7 0 0 0 0 1 43 1 45 1 45 1 48 1 27 1 49 1 35 1 57CJJ81176_1288 - RelA/SpoT family protein 8 69 6 13 2 3 2 4 2 36 1 10 1 10 2 33 0 0 0 0 1 10 1 11CJJ81176_1289 rpoZ DNA-directed RNA polymerase subunit 2 5 2 3 0 0 0 0 1 9 0 0 0 0 2 14 0 0 0 0 0 0 1 13CJJ81176_1290 pyrH uridylate kinase 2 2 1 1 0 0 0 0 0 0 1 12 0 0 1 10 0 0 0 0 0 0 1 11CJJ81176_1291 - M24/M37 family peptidase 4 5 2 2 0 0 0 0 1 9 1 35 2 19 1 14 1 20 1 18 1 20 2 22CJJ81176_1292 - cell division protein FtsX, putative 3 3 4 4 1 1 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_1293 lolD lipoprotein releasing system ATP-binding 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1294 trmB tRNA (guanine-N(7)-)-methyltransferase 21 80 18 113 17 82 12 109 13 357 10 270 11 352 10 274 10 442 11 720 9 418 9 685CJJ81176_1295 flpA fibronectin type III domain-containing protein 30 65 28 77 24 79 17 79 10 214 7 126 11 275 11 167 16 279 9 250 13 314 10 278

CJJ81176_1296 -ribosomal large subunit pseudouridine synthase A 11 13 3 3 2 5 0 0 1 19 1 8 1 23 0 0 1 6 0 0 0 0 0 0

CJJ81176_1297 mrdB rod shape-determining protein RodA, putative 6 13 5 11 0 0 2 5 2 15 0 0 0 0 0 0 0 0 0 0 1 13 1 16CJJ81176_1300 ktrB TrkH family potassium uptake protein 47 225 33 112 41 262 22 104 30 828 12 200 27 866 14 221 28 787 15 308 22 710 9 208CJJ81176_1301 ktrA potassium uptake protein TrkA, putative 13 129 12 87 13 140 7 99 8 609 5 138 11 620 6 198 13 365 6 146 9 380 5 148CJJ81176_1302 - hypothetical protein 9 17 5 7 2 4 1 2 1 23 2 19 1 8 2 17 1 11 1 12 1 25 1 22CJJ81176_1303 upp uracil phosphoribosyltransferase 9 19 3 6 4 18 2 5 3 110 1 10 3 97 2 28 5 118 1 12 3 84 1 27CJJ81176_1304 - NADP-dependent malic enzyme, truncation 15 42 5 8 12 51 3 7 6 176 1 47 7 196 1 47 11 349 3 64 10 378 2 59CJJ81176_1305 gltX glutamyl-tRNA synthetase 3 3 2 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1306 - SurA-like chaperone 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1307 accC-2 biotin carboxylase 3 18 2 8 1 24 1 7 1 72 2 60 2 48 1 36 1 47 1 21 1 20 2 46CJJ81176_1308 accB acetyl-CoA carboxylase 0 0 0 0 0 0 0 0 1 8 1 8 0 0 1 9 0 0 0 0 0 0 0 0CJJ81176_1309 dcd deoxycytidine triphosphate deaminase 14 73 10 35 15 91 6 34 10 357 5 105 12 370 4 105 8 341 2 58 7 357 2 57CJJ81176_1310 pseB polysaccharide biosynthesis protein 15 43 1 1 11 42 0 0 5 168 0 0 6 190 0 0 7 99 0 0 3 89 1 11CJJ81176_1311 pseC aminotransferase 1 1 3 3 0 0 2 3 0 0 0 0 0 0 0 0 0 0 1 12 0 0 0 0CJJ81176_1312 - hypothetical protein 29 388 23 277 26 382 19 268 21 1329 20 971 20 1311 19 885 19 1157 13 906 20 1374 15 925CJJ81176_1313 - hypothetical protein 29 564 26 542 23 570 21 530 21 3021 19 2761 21 2874 20 2735 23 2422 20 2691 22 2390 16 2253CJJ81176_1314 - hypothetical protein 53 485 42 453 43 506 30 416 32 1892 26 1686 28 1946 27 1775 31 1497 25 1184 25 1488 28 1120CJJ81176_1315 - hypothetical protein 28 465 24 425 26 506 19 452 20 1686 17 1269 20 2022 16 1330 21 1663 14 1379 19 1746 9 1441CJJ81176_1316 - hypothetical protein 5 10 3 5 2 5 2 5 0 0 1 10 1 10 1 7 1 6 0 0 0 0 0 0CJJ81176_1317 - hypothetical protein 51 486 37 298 38 491 26 319 27 2386 25 1824 29 2297 25 1808 29 2512 16 1715 27 2694 15 1565CJJ81176_1318 - HAD family phosphatase 58 400 42 385 48 481 37 393 40 2025 29 1982 39 1915 34 1956 40 2353 27 2273 31 2210 24 1983CJJ81176_1319 - 3-oxoacyl-(acyl carrier protein) synthase III 43 837 38 700 38 898 26 726 28 3938 31 4420 32 3993 30 4082 30 3969 24 5083 23 4037 27 4827CJJ81176_1320 - acyl carrier protein, putative 9 101 5 121 6 109 5 122 6 382 5 357 6 407 5 300 6 694 5 708 5 710 4 591CJJ81176_1321 - hypothetical protein 37 236 32 201 31 307 22 181 23 1040 18 1028 21 1212 19 1083 27 1089 14 925 22 1156 13 831CJJ81176_1322 - amino acid adenylation domain-containing p 81 1226 72 1159 74 1356 54 1182 53 4615 48 4265 54 4661 47 4294 56 5741 38 5578 47 5596 39 5097CJJ81176_1323 - acetyltransferase 19 87 13 73 14 93 7 74 12 437 7 284 10 438 8 252 10 351 8 357 8 388 9 399CJJ81176_1324 - hypothetical protein 15 175 11 86 13 180 11 80 13 932 9 715 14 959 10 802 11 1223 8 918 10 1338 10 1130CJJ81176_1325 - formyl transferase domain-containing protein 14 264 11 260 13 245 12 251 11 828 11 898 12 842 10 901 12 1242 9 1663 10 1120 9 1554CJJ81176_1326 - acyl carrier protein, putative 3 12 2 4 2 17 2 8 2 34 2 33 1 27 1 7 2 31 1 27 2 38 1 19CJJ81176_1327 - hypothetical protein 37 764 26 584 34 786 24 564 26 2652 21 1933 23 2792 20 1877 32 2875 20 2090 25 3140 18 2374CJJ81176_1328 neuA acylneuraminate cytidylyltransferase 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1329 pseG flagellar protein, putative 0 0 1 1 0 0 0 0 2 19 1 14 1 8 1 7 0 0 1 12 0 0 0 0CJJ81176_1330 pseH acetyltransferase 1 1 1 1 0 0 0 0 1 25 1 17 1 8 1 19 2 14 1 55 0 0 1 49CJJ81176_1331 hisF-1 imidazole glycerol phosphate synthase subunit 45 897 38 572 37 1040 29 624 34 3452 28 2405 31 3406 29 2139 38 4102 29 3350 33 4144 30 3699CJJ81176_1332 hisH imidazole glycerol phosphate synthase subunit 19 86 15 43 17 111 9 44 13 318 7 187 10 347 7 214 14 524 6 537 11 570 8 615CJJ81176_1333 pseA flagellin modification protein, PseA 32 235 17 49 31 268 10 47 26 887 8 78 24 895 11 92 25 1100 9 147 22 1070 10 110CJJ81176_1334 neuB N-acetylneuraminic acid synthetase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1335 - motility accessory factor 74 820 52 397 67 855 39 341 48 4579 31 2225 47 4411 33 2215 52 4326 29 2191 43 4202 30 2220CJJ81176_1336 pseD PseD 89 1298 68 959 79 1461 49 928 59 4601 37 2316 54 4512 43 2196 64 3670 37 1925 53 3644 37 2042CJJ81176_1337 pseE PseE 18 38 7 11 10 36 2 6 11 299 2 29 8 256 2 31 7 112 2 92 6 132 2 32CJJ81176_1338 flaB flagellin 45 354 20 190 42 381 14 186 31 1802 16 591 38 1944 15 592 32 1146 12 461 25 1265 13 556CJJ81176_1339 flaA flagellin 12 42 5 7 10 29 4 11 8 142 1 33 8 165 2 31 6 109 1 12 8 152 0 0CJJ81176_1340 - motility accessory factor 113 1278 86 450 103 1291 62 423 88 3883 53 1416 84 3964 49 1423 81 4200 46 1523 74 4162 38 1462CJJ81176_1341 - hypothetical protein 69 716 46 503 57 740 36 483 45 2747 35 1737 45 2601 39 1831 44 3051 26 1449 39 2942 26 1303CJJ81176_1342 ctsG transformation system protein 24 198 22 105 21 235 17 116 17 732 16 589 18 738 14 512 17 699 13 531 14 760 9 413CJJ81176_1343 gcp DNA-binding/iron metalloprotein 6 46 6 25 5 66 5 34 5 246 5 146 5 347 6 219 5 249 3 107 5 261 4 130CJJ81176_1344 - hypothetical protein 43 242 31 120 36 229 20 96 29 839 11 171 23 821 12 185 28 961 6 217 21 912 11 345

CJJ81176_1345 dxr1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 6 1 3 1 2 0 0 0 0 1 10 1 8 0 0 2 17 0 0 0 0 1 11

CJJ81176_1346 cdsA phosphatidate cytidylyltransferase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1347 - hypothetical protein 14 155 12 90 13 176 7 93 9 493 7 144 8 447 7 157 9 291 3 58 8 220 5 84CJJ81176_1348 - fibronectin/fibrinogen binding protein 64 618 53 522 54 726 37 511 38 2473 30 2450 33 2436 32 2407 39 2886 22 2368 36 2861 30 2474

CJJ81176_1349 mobAmolybdopterin-guanine dinucleotide biosynthesis 10 65 7 43 8 78 4 39 5 200 2 29 5 254 1 29 5 74 0 0 5 91 2 22

CJJ81176_1350 pldA phospholipase A 51 715 42 531 48 744 39 545 33 2688 27 1997 34 2839 29 2155 34 2593 20 2206 33 2963 26 2633

CJJ81176_1351 ceuBenterochelin ABC transporter, permease protein 70 992 61 667 61 919 50 665 45 3853 44 3200 46 3968 43 3349 53 4796 39 3545 50 4788 42 3715

CJJ81176_1352 ceuC enterochelin ABC transporter, permease 48 736 39 562 42 753 23 511 28 2868 18 1673 29 2670 20 1660 33 3333 14 1840 23 3257 16 1918CJJ81176_1353 ceuD enterochelin ABC transporter, ATP-binding 36 566 28 515 32 667 28 547 31 1743 24 1346 27 1793 28 1384 33 2184 23 2130 29 2519 26 1827CJJ81176_1354 - enterochelin ABC transporter, periplasmic 28 351 20 214 24 371 16 215 18 1391 14 818 16 1479 12 875 20 2505 14 1669 21 2471 14 1476CJJ81176_1355 - hypothetical protein 7 8 3 5 3 5 1 2 2 15 1 8 2 19 0 0 1 31 1 18 1 20 1 24CJJ81176_1356 - RelE/ParE family plasmid stabilization system 11 43 6 30 8 41 4 29 6 202 6 159 8 199 6 236 7 151 3 104 4 119 5 189CJJ81176_1358 - hypothetical protein 53 816 44 755 42 814 34 761 39 3805 35 3890 33 3716 39 3896 42 3728 29 3607 33 3984 29 3167CJJ81176_1359 nrfA cytochrome c552 113 2280 96 2409 103 2479 79 2440 80 13065 70 15764 72 13501 76 16261 76 12731 55 12800 66 13772 54 13765CJJ81176_1360 nrfH cytochrome c-type protein nrfH 20 423 16 350 16 433 14 333 16 1698 15 1791 17 1832 14 1706 15 2515 14 2450 13 2783 15 2326CJJ81176_1361 ppk polyphosphate kinase 2 1 1 1 0 0 0 0 1 25 1 29 1 19 1 16 1 16 1 43 1 10 1 43CJJ81176_1363 - hypothetical protein 17 91 12 85 16 99 10 79 15 406 12 416 13 449 14 400 16 430 10 262 13 428 14 270CJJ81176_1364 ruvB Holliday junction DNA helicase RuvB 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1365 - hypothetical protein 1 2 1 3 1 2 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1366 fumC fumarate hydratase 5 21 2 21 2 15 1 21 1 53 2 37 1 37 1 35 1 35 1 37 1 48 1 40

CJJ81176_1367 - serine protease 211 2116 162 1487 191 2125 133 1467 138 7225 105 5492 137 7391 120 5806 126 7756 83 6859 116 8186 91 7088

CJJ81176_1368 glmSglucosamine--fructose-6-phosphate aminotransferase 4 8 2 4 3 8 1 2 1 8 0 0 1 17 0 0 1 16 0 0 0 0 0 0

CJJ81176_1369 - GlnD family protein 79 307 39 148 61 312 28 123 42 1206 30 684 46 1299 34 614 40 1048 21 598 30 943 25 618CJJ81176_1370 - hypothetical protein 1 1 1 1 0 0 1 3 0 0 0 0 0 0 1 14 0 0 0 0 0 0 0 0CJJ81176_1371 - serine protease 68 365 35 207 50 405 27 182 28 1838 21 1247 33 2004 21 1222 30 1896 17 1062 29 1754 22 1125CJJ81176_1372 - xanthine/uracil permease family protein 15 38 7 13 10 30 5 15 7 119 1 14 8 120 3 22 8 115 2 34 7 89 4 57CJJ81176_1373 - putative nucleotide phosphoribosyltransferase 3 3 1 1 1 1 1 2 2 38 2 89 2 58 2 97 1 19 2 76 1 28 2 94CJJ81176_1374 - VacJ family lipoprotein 37 697 27 374 34 764 23 359 28 3390 22 1247 30 3517 24 1375 26 2996 14 1044 24 3259 19 1336CJJ81176_1375 - toluene tolerance protein, putative 22 343 14 236 18 395 8 241 11 938 9 323 10 900 8 304 13 562 5 198 10 512 7 232CJJ81176_1376 - hypothetical protein 87 695 57 298 77 743 42 274 66 3649 38 1853 62 3604 40 1710 68 3679 27 1458 56 3601 25 1443

CJJ81176_1377 -deoxyribonucleotide triphosphate pyrophosphatase 27 191 19 142 24 211 12 133 19 843 15 406 18 871 14 424 17 1037 12 586 16 943 11 434

CJJ81176_1378 - multidrug resistance efflux transporter 3 3 3 3 0 0 1 2 0 0 0 0 1 8 0 0 0 0 0 0 0 0 1 13CJJ81176_1379 - iron-sulfur cluster-binding protein 43 192 23 81 35 196 11 75 22 788 9 227 19 804 9 250 24 499 7 168 18 540 7 138CJJ81176_1380 selA selenocysteine synthase 60 660 54 1051 53 760 48 1070 36 3749 32 3153 37 3489 35 2912 38 3108 32 3631 34 2859 38 3721CJJ81176_1381 selB selenocysteine-specific elongation factor 56 385 46 384 45 466 38 418 35 1783 23 1069 31 1830 29 1196 39 1800 24 1840 31 1936 24 1635CJJ81176_1382 - hypothetical protein 2 6 2 4 2 6 0 0 1 11 0 0 1 21 0 0 0 0 0 0 0 0 0 0CJJ81176_1383 - putative lipoprotein 15 100 10 53 9 116 7 48 8 520 8 323 8 449 7 278 8 505 7 363 8 629 6 348CJJ81176_1384 fldA flavodoxin FldA 0 0 1 1 0 0 0 0 0 0 1 14 0 0 1 12 0 0 0 0 0 0 0 0CJJ81176_1385 - hypothetical protein 41 725 42 599 38 843 34 716 39 3038 34 3134 36 3213 32 3458 30 2672 22 2200 28 2983 25 1870CJJ81176_1386 - hypothetical protein 18 265 14 168 14 297 10 165 12 1357 10 1117 12 1377 13 1182 12 1198 8 952 10 1282 9 755CJJ81176_1387 katA catalase 72 1743 67 1571 67 1638 62 1557 59 6448 58 6648 56 6338 59 6587 59 6885 51 6682 58 7362 52 6311CJJ81176_1388 - ankyrin repeat-containing protein 25 548 22 468 26 529 18 491 19 2308 16 2250 19 2229 19 2191 19 2433 14 2017 18 2608 14 1934CJJ81176_1389 - hypothetical protein 18 49 5 10 13 60 1 5 6 140 1 21 6 182 0 0 5 94 1 34 4 96 1 13CJJ81176_1390 - endoribonuclease L-PSP, putative 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1391 - cryptic C4-dicarboxylate transporter DcuD 83 2945 81 3660 78 3151 75 3691 67 14354 67 15792 70 14876 70 16332 69 16021 55 18463 63 17036 59 18830CJJ81176_1392 metC cystathionine beta-lyase 56 1091 51 1364 54 1181 45 1330 49 4161 44 4226 47 4202 44 4251 43 4112 37 4806 39 4580 36 4463CJJ81176_1393 purB-2 adenylosuccinate lyase 56 845 48 831 54 927 39 904 45 4454 38 4107 45 4649 39 4034 45 3495 35 3307 42 3503 32 3033CJJ81176_1394 - MmgE/PrpD family protein 65 1284 57 1276 60 1374 46 1336 53 7471 47 6464 54 7819 48 7122 54 8951 43 6963 51 10198 43 6966CJJ81176_1395 - feoA family protein 5 103 5 100 5 76 5 90 4 575 4 664 5 546 5 761 4 611 4 1001 4 702 4 855CJJ81176_1396 - ferrous iron transport protein B 28 337 23 218 22 341 20 239 19 1352 17 1102 19 1361 17 940 21 1234 16 1007 19 1298 17 1077CJJ81176_1397 feoB ferrous iron transport protein B 63 2822 53 2911 60 2971 45 2993 47 16171 45 14844 49 17023 48 15999 49 16984 35 15784 42 18296 38 16299CJJ81176_1398 - hydrogenase, (NiFe)/(NiFeSe) small subunit 60 615 46 512 50 613 33 509 33 1938 30 1370 36 2070 33 1387 37 1862 24 1822 33 1919 26 2086CJJ81176_1399 fabI enoyl-(acyl carrier protein) reductase 52 783 40 989 43 861 38 1087 45 3773 38 3655 37 3755 40 3773 45 3501 34 3872 38 3685 34 3413CJJ81176_1400 tpiA triosephosphate isomerase 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1401 pgk phosphoglycerate kinase 2 6 1 4 1 4 0 0 1 21 1 12 1 14 1 9 1 17 1 55 1 15 1 30CJJ81176_1402 gapA glyceraldehyde 3-phosphate dehydrogenase A 1 1 0 0 0 0 1 2 0 0 0 0 0 0 1 7 1 9 0 0 1 10 0 0

CJJ81176_1403 nadDnicotinate (nicotinamide) nucleotide adenylyltransferase 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1404 - hypothetical protein 11 73 8 51 11 76 7 54 5 299 4 152 3 234 5 162 5 275 4 128 3 228 3 111CJJ81176_1405 - hypothetical protein 20 286 19 213 17 314 17 243 17 2420 15 1453 17 2318 14 1316 19 3256 16 1757 15 3011 16 1589CJJ81176_1406 algC phosphomannomutase/phosphoglucomutase 7 15 5 9 4 15 3 6 3 38 3 72 1 21 3 38 2 82 2 110 2 79 2 67CJJ81176_1407 fliL flagellar basal body-associated protein FliL 1 2 1 4 1 4 1 3 1 15 1 25 1 12 0 0 2 17 0 0 0 0 0 0CJJ81176_1408 acpS 4'-phosphopantetheinyl transferase 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1409 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1410 - cytochrome P450 family protein 8 11 4 4 3 10 1 2 3 49 1 8 2 43 2 17 2 24 2 27 2 38 1 24CJJ81176_1411 - hypothetical protein 6 22 7 15 3 19 2 6 2 53 3 43 4 87 1 16 2 60 2 43 1 25 2 73CJJ81176_1412 kpsS capsule polysaccharide export protein KpsS 23 65 6 11 19 69 1 4 31 1514 7 146 33 1472 12 179 22 672 0 0 18 715 2 22CJJ81176_1413 kpsC capsule polysaccharide export protein KpsC 41 74 11 26 22 66 6 21 51 1361 11 221 43 1305 11 269 37 927 3 95 30 862 5 86CJJ81176_1414 - adenylylsulfate kinase 3 3 2 2 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1415 -putative sugar-1-phosphate nucleotidyltransferase 30 149 13 40 28 207 9 42 27 1125 9 255 26 1220 10 286 25 711 4 162 12 654 5 100

CJJ81176_1416 - class I glutamine amidotransferase, putative 30 137 14 62 23 167 11 63 25 907 6 126 21 798 10 138 20 806 3 122 17 902 4 165CJJ81176_1417 - hypothetical protein 110 937 54 379 93 1069 41 388 82 6741 37 1859 80 7056 38 1691 83 5538 23 1239 68 5626 24 1284CJJ81176_1418 - putative methyltransferase 57 1328 51 1208 51 1286 41 1238 45 8208 40 7626 44 8408 41 7443 47 11141 38 9767 39 10617 37 10139CJJ81176_1419 - putative methyltransferase 37 691 27 563 33 692 27 549 29 2690 27 2304 31 3044 27 2662 29 2563 24 2609 25 2907 22 3232CJJ81176_1420 - putative sugar transferase 102 2891 90 2235 88 2888 75 2129 79 12723 67 14509 68 12856 65 15133 81 14630 60 18091 71 14839 61 19569CJJ81176_1421 - putative glycosyltransferase 2 3 1 1 2 5 0 0 1 9 0 0 1 14 0 0 2 30 1 12 1 15 0 0CJJ81176_1422 hddC capsular biosynthesis nucleotidyltransferase 1 1 1 1 1 3 0 0 0 0 0 0 1 12 0 0 0 0 0 0 0 0 0 0CJJ81176_1423 gmhA-2 phosphoheptose isomerase 10 39 6 18 10 45 2 16 6 180 4 122 8 186 4 79 7 176 4 110 5 152 3 105

CJJ81176_1424 hddA capsular biosynthesis sugar kinase, putative 23 85 3 4 13 71 1 2 32 2242 11 361 32 2217 10 324 22 1338 5 116 18 1361 4 84CJJ81176_1425 - HrEpiB 51 2969 45 1424 44 1203 34 835 42 5085 35 4338 38 5310 29 5131 33 4332 28 3307 30 4430 29 3448CJJ81176_1426 wcbK GDP-mannose 4,6-dehydratase 46 314 29 204 42 349 24 209 42 2469 29 1953 42 2471 32 2070 38 1980 24 1309 32 2071 25 1376CJJ81176_1427 fcl GDP-fucose synthetase 15 48 8 21 6 35 4 20 15 603 6 111 17 620 5 117 14 400 2 61 9 357 4 97CJJ81176_1428 - hypothetical protein 21 61 13 34 18 64 10 41 13 431 14 227 15 447 11 183 12 274 6 104 13 251 5 97CJJ81176_1429 - hypothetical protein 19 113 13 56 16 133 11 55 16 754 12 468 15 844 9 357 13 601 9 375 13 629 7 289CJJ81176_1430 - nucleotide-sugar epimerase-dehydratase 10 26 2 11 5 27 2 17 14 388 1 25 13 352 3 52 12 168 0 0 6 127 1 11CJJ81176_1431 - putative sugar transferase 72 330 29 113 39 343 13 100 54 4201 23 534 53 4173 26 616 45 2590 7 204 39 2405 7 194CJJ81176_1432 - galactosyltransferase 69 1066 52 766 65 1112 40 815 50 5172 45 4451 47 5507 46 4907 57 5415 36 3945 47 5051 36 4020CJJ81176_1433 - putative sugar transferase 47 107 14 30 21 81 9 28 36 1703 11 422 26 1485 13 376 29 853 5 198 22 811 5 216CJJ81176_1434 - putative sugar transferase 36 116 20 62 19 53 8 48 24 393 5 91 15 242 5 85 21 201 5 85 8 101 6 76CJJ81176_1435 - putative sugar transferase 119 2406 87 858 102 2805 73 911 95 10927 67 4533 90 10455 73 4684 90 11620 55 4317 79 11952 53 4209CJJ81176_1436 - putative glycosyl transferase 53 107 17 26 28 94 4 15 54 2076 12 354 45 1785 13 271 40 1659 5 159 29 1369 6 148CJJ81176_1437 kpsF arabinose-5-phosphate isomerase 3 5 0 0 2 2 1 2 1 8 0 0 1 17 1 9 0 0 0 0 0 0 0 0CJJ81176_1438 kpsD capsular polysaccharide ABC transporter 2 6 1 2 1 2 1 3 1 13 2 25 2 31 1 10 2 20 2 49 2 35 2 43CJJ81176_1439 kpsE capsular polysaccharide ABC transporter 5 10 5 6 1 1 2 4 2 36 1 17 2 31 1 24 3 38 0 0 2 46 2 30CJJ81176_1440 kpsT capsular polysaccharide ABC transporter 4 7 1 2 1 8 0 0 1 423 1 91 1 471 1 102 1 137 1 12 1 127 1 11CJJ81176_1441 kpsM capsular polysaccharide ABC transporter 3 3 0 0 1 2 0 0 1 17 0 0 1 12 0 0 2 30 1 12 1 25 0 0CJJ81176_1442 - hypothetical protein 26 632 25 648 26 762 21 618 21 3127 21 3083 22 3042 21 3114 20 3813 19 2752 20 4063 20 2782CJJ81176_1443 - hypothetical protein 19 551 15 478 21 573 15 432 16 4180 14 3276 16 3828 14 2619 15 4988 11 2999 11 4557 9 2612

CJJ81176_1444 -deoxyuridine triphosphatase domain-containing protein 1 1 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1445 - hypothetical protein 15 64 12 58 12 83 9 59 9 312 8 361 7 314 7 314 10 352 4 232 9 342 6 200CJJ81176_1446 tilS tRNA(Ile)-lysidine synthetase 4 5 2 3 1 2 2 4 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1447 yliG putative tRNA modifying protein 55 859 53 1028 53 894 44 1168 41 2751 40 2450 35 2788 40 2640 37 2128 34 3054 32 2215 33 3262CJJ81176_1448 prfB peptide chain release factor 2 0 0 0 0 0 0 0 0 1 8 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_1449 - hypothetical protein 6 62 4 28 5 84 3 31 5 299 3 282 4 306 3 281 6 356 4 265 5 423 3 181CJJ81176_1450 truD tRNA pseudouridine synthase D 10 16 8 8 7 20 3 7 2 47 0 0 6 70 0 0 2 17 1 12 1 10 0 0CJJ81176_1451 - thiamine monophosphate kinase 2 39 2 35 1 42 1 26 1 93 1 235 1 83 1 102 1 181 1 272 1 134 1 124CJJ81176_1452 - hypothetical protein 6 11 1 1 1 1 0 0 1 8 0 0 0 0 0 0 0 0 1 12 0 0 0 0CJJ81176_1453 - hypothetical protein 3 4 1 1 2 3 0 0 3 34 1 10 3 39 0 0 2 27 0 0 2 23 0 0CJJ81176_1454 - site-specific DNA methyltransferase, putative 19 78 9 45 15 104 9 67 9 227 6 117 8 180 6 114 9 206 6 128 8 208 5 113CJJ81176_1455 flgI flagellar basal body P-ring protein 1 5 1 1 1 1 0 0 1 13 0 0 1 8 0 0 1 6 0 0 1 10 0 0CJJ81176_1456 flgJ hypothetical protein 4 3 2 2 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_1457 flgM hypothetical protein 2 2 0 0 1 2 0 0 1 8 0 0 0 0 0 0 1 8 0 0 0 0 0 0CJJ81176_1458 flgN flagellar export chaperon 5 9 1 1 3 7 1 3 3 38 0 0 2 52 0 0 2 66 1 15 2 48 1 35CJJ81176_1459 flgK flagellar hook-associated protein FlgK 34 91 0 0 28 120 0 0 22 474 1 2 18 387 2 5 21 351 1 9 16 383 1 7CJJ81176_1460 - hypothetical protein 15 114 11 89 16 132 12 107 9 499 9 433 9 488 9 407 9 532 6 455 9 487 7 278CJJ81176_1461 - hypothetical protein 13 520 11 584 13 588 10 633 11 2444 10 2500 12 2171 11 2405 11 2534 9 3732 10 2400 10 3613CJJ81176_1462 - hypothetical protein 43 1943 36 1205 39 1322 32 1159 31 4357 29 3798 32 4558 28 3956 29 4302 20 3451 25 4015 23 3942CJJ81176_1463 ctsF general secretory pathway protein F 50 397 41 301 41 349 35 294 33 1442 27 1401 28 1340 32 1477 37 1501 25 1495 28 1389 26 1659CJJ81176_1464 ctsE general secretory pathway protein E 65 1010 52 743 57 1125 39 778 45 4548 39 3763 42 4595 41 4077 52 5663 38 4626 50 6136 36 4368CJJ81176_1465 ctsX transformation system protein 49 1055 47 685 43 1002 35 717 35 3295 29 2687 35 3449 33 3028 40 3081 25 2584 33 3084 28 2744CJJ81176_1466 ctsP transformation system protein 30 131 21 121 28 154 15 132 15 968 16 548 14 862 14 542 18 1432 8 677 13 1275 7 828CJJ81176_1467 ctsD general secretory pathway protein D 70 861 53 771 59 842 38 819 51 3913 44 4671 45 3666 45 4174 51 4367 35 4504 42 4496 34 4136CJJ81176_1468 ctsR transformation system protein 18 171 15 75 17 186 11 69 13 380 10 171 13 405 12 173 10 386 7 119 10 345 9 189

CJJ81176_1469 -pyruvate ferredoxin/flavodoxin oxidoreductase 6 7 6 10 1 1 1 2 1 8 1 8 1 8 1 9 0 0 0 0 0 0 1 11

CJJ81176_1470 - HAD-superfamily hydrolase, subfamily IA 34 639 31 536 34 671 28 498 21 4465 19 4311 20 4483 19 4222 21 5204 17 4156 19 5297 14 3909CJJ81176_1471 cadF fibronectin-binding protein 40 313 26 244 30 356 18 252 28 1074 16 604 22 993 15 600 27 1031 9 506 17 983 17 610CJJ81176_1472 rpsI 30S ribosomal protein S9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1473 rplM 50S ribosomal protein L13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1474 - putative recombination protein RecB 14 32 8 25 7 28 5 24 4 153 4 126 3 149 3 110 5 123 2 284 2 81 3 432CJJ81176_1475 - hypothetical protein 6 5 4 7 1 2 2 4 2 15 2 17 1 10 1 10 0 0 2 34 0 0 0 0CJJ81176_1476 - putative lipoprotein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1477 - hypothetical protein 6 16 2 7 3 11 2 4 3 43 1 14 2 39 1 14 3 46 1 18 3 56 1 13CJJ81176_1478 - hypothetical protein 3 14 1 5 2 11 1 5 1 30 1 17 1 31 1 9 2 58 1 12 2 33 0 0CJJ81176_1479 ccoP cytochrome c oxidase, cbb3-type, subunit III 3 3 1 1 1 1 0 0 0 0 1 10 0 0 0 0 1 8 0 0 0 0 0 0CJJ81176_1480 ccoQ cytochrome c oxidase, cbb3-type, subunit IV 2 6 0 0 3 10 0 0 2 26 0 0 2 41 0 0 3 44 0 0 1 13 0 0CJJ81176_1481 ccoO cbb3-type cytochrome c oxidase subunit II 4 8 2 3 2 3 1 2 2 36 1 8 2 23 3 22 2 16 2 34 2 25 2 30CJJ81176_1482 ccoN cbb3-type cytochrome c oxidase subunit I 0 0 2 2 0 0 0 0 1 168 1 136 1 221 1 173 1 208 1 906 1 188 1 1360

CJJ81176_1483 - DNA-binding response regulator 34 271 26 175 28 326 22 185 26 1280 21 808 25 1245 19 666 22 810 17 757 22 885 11 588CJJ81176_1484 - sensory box sensor histidine kinase, putative 56 517 46 516 52 610 37 477 38 2049 33 1943 34 2202 34 1932 40 2181 22 2944 28 2071 20 3221CJJ81176_1485 - hypothetical protein 6 6 5 6 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1486 carA carbamoyl phosphate synthase small subunit 4 5 2 6 2 5 1 3 0 0 2 25 1 8 2 22 1 9 2 55 0 0 1 22CJJ81176_1487 - hypothetical protein 6 8 9 16 3 7 3 13 1 43 1 10 0 0 2 14 1 9 2 128 1 13 0 0CJJ81176_1488 - hypothetical protein 14 103 2 2 14 140 1 2 13 359 1 12 10 337 0 0 12 387 0 0 10 476 0 0CJJ81176_1489 fliJ hypothetical protein 9 56 1 1 7 66 0 0 8 492 0 0 7 449 0 0 8 406 0 0 5 337 0 0CJJ81176_1490 purA adenylosuccinate synthetase 4 10 1 1 1 5 1 3 1 11 0 0 1 10 0 0 1 19 1 15 1 23 1 11CJJ81176_1492 fdhT putative inner membrane protein 59 977 53 817 57 855 48 833 44 3560 39 3826 46 3615 40 3566 49 3216 37 3314 43 3409 41 3373CJJ81176_1493 fdhU hypothetical protein 11 62 8 55 9 65 7 65 6 248 5 150 6 258 6 154 8 340 7 284 6 289 7 219CJJ81176_1494 putP sodium/proline permease 101 1781 88 1119 93 1863 69 1136 79 8588 67 5759 81 9051 74 6168 77 7920 62 6755 74 8799 61 6923CJJ81176_1495 - bifunctional putA protein, putative 206 2845 172 2319 183 2790 141 2320 150 12552 121 9530 135 12358 121 9508 156 12591 95 9016 131 12776 108 9486CJJ81176_1496 selD selenide, water dikinase 37 300 39 329 40 337 29 344 32 1758 25 1105 29 1683 28 1113 29 1605 24 1751 26 1589 23 1640CJJ81176_1497 - hypothetical protein 21 244 20 394 22 296 17 428 17 762 11 474 17 761 11 495 13 524 8 400 13 512 8 337CJJ81176_1498 - methyl-accepting chemotaxis protein 87 1143 68 940 74 1150 48 930 56 3942 43 2701 54 3962 52 2793 64 4946 46 3967 50 5188 42 4079CJJ81176_1499 - molybdate transport repressor 4 23 5 26 3 20 2 20 3 62 3 41 1 21 2 33 3 79 2 49 2 144 1 24CJJ81176_1500 fdhD formate dehydrogenase accessory protein 13 18 3 3 5 12 1 2 5 83 1 8 4 45 1 9 2 17 0 0 1 20 0 0CJJ81176_1501 fdhC formate dehydrogenase, cytochrome b subunit 35 444 27 268 34 504 21 278 25 2219 20 1583 27 2401 18 1579 28 1999 11 1425 26 2129 14 1492CJJ81176_1502 fdhB formate dehydrogenase, iron-sulfur subunit 25 157 13 75 19 161 10 80 18 592 9 229 13 432 9 178 18 667 8 424 14 687 8 386CJJ81176_1503 fdhA formate dehydrogenase, alpha subunit 90 854 77 665 79 874 50 595 65 4199 43 2747 62 4043 48 2769 59 3667 34 2972 56 3766 33 2795CJJ81176_1504 - formate dehydrogenase 26 244 20 303 21 274 20 260 22 1104 16 575 18 955 15 562 18 749 11 543 16 793 9 469

CJJ81176_1505 -Tat pathway signal sequence domain-containing protein 7 109 5 148 7 126 5 169 6 446 5 212 6 482 5 207 6 212 3 110 6 213 3 130

CJJ81176_1506 - hypothetical protein 20 102 15 69 19 111 11 62 13 457 11 206 19 484 10 173 13 362 9 223 12 416 8 202CJJ81176_1507 nspC carboxynorspermidine decarboxylase 4 12 2 11 3 18 3 16 2 68 2 153 2 77 2 105 2 77 2 88 1 35 1 92CJJ81176_1508 - oxidoreductase, putative 68 2048 52 1654 60 1899 46 1668 47 6528 47 6623 45 6619 47 6775 50 8166 41 7533 45 8886 42 7069CJJ81176_1509 moaD thiS family protein 2 3 2 2 1 4 1 2 3 72 2 49 1 10 1 17 2 42 1 43 1 28 0 0CJJ81176_1510 moaE molybdopterin converting factor, subunit 2 7 17 3 5 6 19 1 3 6 76 0 0 6 72 1 9 4 68 0 0 3 51 1 11CJJ81176_1511 moeA2 molybdopterin biosynthesis MoeA protein 16 126 7 78 18 162 3 86 11 348 2 35 9 294 3 41 10 154 1 34 8 132 1 11CJJ81176_1512 - hypothetical protein 76 2479 58 1777 63 2609 51 1723 53 11180 46 8127 53 10013 45 6711 58 14063 33 9443 47 13372 39 7746CJJ81176_1513 - hypothetical protein 91 1275 78 1854 78 1337 52 1674 56 3518 45 3353 50 3528 48 3235 59 4902 37 4501 48 4876 35 4597CJJ81176_1514 purM phosphoribosylaminoimidazole synthetase 78 3249 75 2845 75 3183 65 2816 71 22449 63 18127 68 22840 66 17962 62 16153 57 18994 59 17221 60 18646CJJ81176_1515 coaE dephospho-CoA kinase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1516 dapF diaminopimelate epimerase 1 8 1 7 1 7 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1517 -

mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein 24 483 22 373 24 566 20 358 19 1510 15 917 20 1580 17 994 18 1707 15 1013 16 1660 14 1198

CJJ81176_1518 - hypothetical protein 21 43 15 28 13 44 8 23 5 115 3 27 6 89 2 16 8 94 3 40 6 91 3 46CJJ81176_1519 - bacterioferritin, putative 14 150 8 375 11 173 6 307 7 716 4 1142 5 794 4 1254 8 867 4 2813 6 1067 5 3262CJJ81176_1520 pgi glucose-6-phosphate isomerase 8 659 8 1016 6 690 9 1136 5 3216 5 4154 5 3193 5 3891 6 2557 5 3268 5 2461 6 3656CJJ81176_1521 galU UTP-glucose-1-phosphate uridylyltransferase 2 4 2 11 1 5 2 13 0 0 0 0 0 0 0 0 1 6 1 12 0 0 0 0CJJ81176_1522 acs acetyl-CoA synthetase 153 6032 135 3939 137 5792 119 3919 122 31175 120 32098 126 31513 121 32160 130 32450 109 33304 120 35211 114 31367CJJ81176_1523 - tungsten ABC transporter, ATP-binding 47 435 26 421 35 506 20 453 22 839 17 585 24 848 19 476 26 955 11 650 19 806 9 583CJJ81176_1524 - tungstate ABC transporter, permease protein 32 181 25 130 29 213 19 120 18 1057 16 519 18 1030 17 537 24 1009 17 653 22 1158 14 664

CJJ81176_1525 -tungstate ABC transporter, periplasmic tungstate-binding protein, putative 26 466 19 423 24 482 13 423 17 1813 13 1162 18 1632 14 1132 19 2559 14 2255 16 2565 13 1926

CJJ81176_1526 - LamB/YcsF family protein 28 357 20 301 26 408 21 330 19 2752 17 1498 19 2794 17 1541 19 1615 13 809 21 1944 16 777CJJ81176_1527 - hypothetical protein 30 700 23 264 28 659 20 310 26 2410 23 1836 26 2517 25 1837 26 3298 18 1526 25 3353 18 1506CJJ81176_1528 - hypothetical protein 45 1531 36 1060 40 1575 30 1006 30 8305 29 7200 35 8735 29 7633 33 7871 22 6191 32 8156 30 7298CJJ81176_1529 - integral membrane protein 72 2149 68 2320 69 2248 61 2340 55 9428 54 10367 58 9316 56 10497 59 8568 50 10398 50 8206 51 9975CJJ81176_1530 - flavodoxin-like fold domain-containing 31 468 29 466 28 492 26 448 23 1688 23 1319 24 1576 23 1177 23 1604 17 1739 20 1630 17 1600CJJ81176_1531 - transcriptional regulator, putative 27 924 24 961 26 725 21 890 22 3458 22 2596 19 3582 22 2859 22 5442 18 3918 24 6288 20 4279CJJ81176_1532 - putative homolog of BLC protein 27 563 26 444 27 501 25 448 25 2694 25 3124 23 2713 26 3005 29 3693 25 4000 27 4281 25 3289

CJJ81176_1533 -zinc-binding dehydrogenase family oxidoreductase 49 2200 49 2387 48 2200 47 2331 45 8963 46 7653 47 8987 47 7602 44 7623 43 6826 44 8262 41 6705

CJJ81176_1534 - type I restriction-modification enzyme 273 16153 253 17630 251 16196 222 17720 225 66702 209 86712 223 69405 210 88329 222 67587 187 87679 207 71711 199 91458CJJ81176_1535 rloH RloH 150 2077 129 1761 136 2424 105 1776 112 12462 99 10567 105 12110 96 10260 116 13875 86 13291 96 13709 83 13228CJJ81176_1536 - hypothetical protein 80 1835 72 2349 70 1800 51 2036 55 7518 51 9267 63 6663 56 7455 62 8251 37 9389 48 7147 37 8671CJJ81176_1537 - hypothetical protein 1 7 2 5 1 9 1 6 1 21 1 16 2 21 1 17 1 17 1 24 1 13 1 38CJJ81176_1538 mloB MloB 113 2317 94 1947 101 2391 84 1960 84 12142 77 12384 79 12486 82 12339 91 13374 73 12931 81 13085 73 13048CJJ81176_1539 - type I restriction-modification system 100 3000 97 3212 96 2923 88 3215 83 13074 86 15119 86 14306 83 15635 87 12814 75 12363 85 14231 74 12187

CJJ81176_1540 - hypothetical protein 10 236 10 362 7 243 8 239 7 917 7 1282 9 889 7 1318 8 1264 8 1638 7 1361 8 1600CJJ81176_1541 - hypothetical protein 54 3475 49 3678 49 3557 44 3538 44 16989 42 20692 43 17951 44 21837 43 19272 37 23192 40 20699 38 23886CJJ81176_1542 - transcriptional regulator 10 172 10 190 10 191 9 176 10 820 9 954 9 806 9 925 11 894 9 799 10 829 10 898CJJ81176_1543 - permease, putative 7 88 8 33 8 83 7 29 6 348 6 293 7 356 7 261 7 471 6 241 7 431 7 299CJJ81176_1544 - hypothetical protein 30 818 28 638 27 702 25 733 24 2645 22 2619 21 2546 23 2543 24 2979 19 2468 23 3016 21 2453CJJ81176_1545 arsR arsenical resistance operon repressor 6 34 4 25 5 34 2 12 3 76 4 95 2 83 2 79 2 124 2 192 3 139 3 189CJJ81176_1546 - arsenical resistance operon repressor 5 107 4 78 4 121 4 68 3 278 2 146 4 314 3 236 4 219 2 207 2 253 3 262CJJ81176_1547 - MerR family transcriptional regulator 19 393 18 296 17 448 15 323 15 1573 15 1529 15 1553 13 1377 14 1320 10 1904 13 1308 11 1921CJJ81176_1548 - methyl-accepting chemotaxis protein 25 86 13 46 20 92 11 44 10 325 9 157 9 399 8 185 15 375 5 211 11 357 8 259CJJ81176_1549 - methyl-accepting chemotaxis protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1550 pflA paralyzed flagella protein PflA 127 1953 8 28 110 2266 6 31 108 13267 8 87 101 13698 6 85 97 8790 0 0 83 8858 1 11CJJ81176_1551 nuoN NADH-quinone oxidoreductase, N subunit 7 24 3 14 4 22 3 16 3 60 1 56 2 52 2 91 3 25 0 0 2 30 1 27CJJ81176_1552 nuoM NADH-quinone oxidoreductase, M subunit 5 46 4 84 4 42 3 94 1 68 1 122 2 79 1 122 1 63 2 125 1 71 2 111CJJ81176_1553 nuoL NADH dehydrogenase subunit L 6 5 4 5 0 0 1 2 1 30 1 21 1 12 1 16 1 14 1 52 1 15 1 89CJJ81176_1554 nuoK NADH-quinone oxidoreductase, K subunit 2 2 1 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1555 nuoJ NADH dehydrogenase subunit J 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1556 nuoI NADH dehydrogenase subunit I 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1557 nuoH NADH dehydrogenase subunit H 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 6 0 0 0 0 1 11CJJ81176_1558 nuoG NADH dehydrogenase subunit G 7 34 6 24 4 23 5 28 4 79 4 99 3 54 3 95 4 74 2 64 4 101 2 105CJJ81176_1559 - hypothetical protein 3 4 2 2 3 4 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1560 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1561 nuoD NADH dehydrogenase subunit D 4 4 2 2 1 2 0 0 1 9 2 27 0 0 1 10 1 6 1 15 0 0 1 19CJJ81176_1562 nuoC NADH dehydrogenase subunit C 2 2 1 1 1 3 0 0 1 15 0 0 1 19 2 19 2 31 0 0 1 10 0 0CJJ81176_1563 nuoB NADH dehydrogenase subunit B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1564 nuoA NADH dehydrogenase subunit A 0 0 0 0 0 0 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1565 - peptide ABC transporter, ATP-binding protein 28 556 24 411 27 664 23 402 22 1756 17 938 21 1613 17 966 22 1821 18 952 21 1571 17 877CJJ81176_1566 - peptide ABC transporter, ATP-binding protein 38 203 25 134 28 263 18 184 21 499 15 441 20 651 17 493 22 710 13 528 16 626 13 548CJJ81176_1567 - peptide ABC transporter, permease protein 29 222 25 187 25 248 18 195 19 1093 13 602 15 1162 14 635 19 675 9 305 16 596 11 348CJJ81176_1568 - peptide ABC transporter, permease protein 42 336 32 311 34 391 24 306 30 1342 24 1063 26 1352 26 1071 30 1327 17 754 27 1222 16 745CJJ81176_1569 - peptide ABC transporter, 63 727 50 848 56 795 40 846 38 4199 26 3903 36 3954 28 3761 42 3002 19 4272 32 2763 20 4392CJJ81176_1570 dmsA anaerobic dimethyl sulfoxide reductase 142 6267 133 7243 136 6120 120 7015 121 26786 115 32943 115 28452 117 33335 122 27302 101 34814 114 30481 103 37325CJJ81176_1571 dmsB dimethylsulfoxide reductase, chain B 28 1695 26 1180 25 1156 23 1175 25 5431 24 5904 23 5947 24 6418 27 7498 21 7091 22 8358 22 6961CJJ81176_1572 - hypothetical protein 57 2451 56 2433 57 2363 53 2462 50 15018 49 16180 46 15722 51 16585 53 20501 47 18951 50 21218 48 17831CJJ81176_1573 - hypothetical protein 37 977 30 1199 33 1104 28 1330 27 5325 25 6340 26 5463 27 6903 26 5638 21 8180 22 6785 18 7538CJJ81176_1574 - flavohemoprotein, truncation 25 435 20 409 17 481 15 466 16 2159 12 1688 13 1929 15 1724 16 2903 15 2978 15 2803 15 2957

CJJ81176_1575 -multidrug transporter membrane component/ATP-binding component 108 3741 101 3458 104 3906 90 3701 95 17815 85 15119 91 18487 80 14908 91 19609 69 14359 77 19231 70 15419

CJJ81176_1576 - proline/betaine transporter, putative 89 2803 81 2760 86 3044 66 2844 68 10365 62 9095 66 10397 69 8972 75 11544 57 10252 68 11549 55 9753CJJ81176_1577 - hypothetical protein 31 375 29 319 31 397 24 300 23 1758 24 1286 24 1797 23 1159 24 2184 19 1748 21 1853 20 1864CJJ81176_1578 infA translation initiation factor IF-1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 68 1 52 1 68 1 32CJJ81176_1579 rpsM 30S ribosomal protein S13 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1580 rpsK 30S ribosomal protein S11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 11CJJ81176_1581 rpsD 30S ribosomal protein S4 1 31 1 98 1 36 1 82 1 134 1 313 1 151 1 302 1 85 1 128 1 94 1 111CJJ81176_1582 rpoA DNA-directed RNA polymerase subunit alpha 2 3 2 5 1 2 1 2 0 0 0 0 1 12 1 7 1 31 0 0 1 15 0 0CJJ81176_1583 rplQ 50S ribosomal protein L17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1584 hisG ATP phosphoribosyltransferase 36 682 33 601 34 694 31 574 32 3072 31 2631 31 3094 30 2498 32 4143 30 4580 31 4412 27 3799CJJ81176_1585 hisD histidinol dehydrogenase 47 646 45 794 44 692 36 773 36 3909 28 2392 34 4303 31 2617 34 4154 28 2764 32 4471 20 2428CJJ81176_1586 hisB imidazole glycerol-phosphate dehydratase 43 819 33 582 38 755 32 590 30 3236 23 3015 29 3689 23 3159 32 3089 27 2618 33 3528 23 2984CJJ81176_1587 hisH imidazole glycerol phosphate synthase subunit 24 426 18 296 21 451 14 303 16 2225 13 1908 16 2345 13 1893 17 2384 13 2313 15 2646 14 2461CJJ81176_1588 hisA imidazole-4-carboxamide isomerase 37 499 32 393 33 541 31 389 31 1881 25 1036 30 1952 28 1147 33 1836 22 1468 27 1888 21 1443CJJ81176_1589 - HrgA protein 38 529 35 493 34 571 28 493 25 2403 19 1852 22 2190 23 1837 29 2035 17 1745 23 2050 17 1595CJJ81176_1590 hisF-2 imidazole glycerol phosphate synthase subunit 37 657 34 675 36 719 29 694 34 3180 29 3214 33 3273 30 3242 32 3150 27 5028 30 3465 27 4106

CJJ81176_1591 hisI

bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 20 310 20 302 19 308 15 329 16 1376 13 971 14 1334 16 926 15 1045 11 738 13 1077 11 855

CJJ81176_1592 dapD2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative 4 6 2 6 2 6 1 8 1 15 1 27 1 25 1 19 1 25 1 31 1 10 0 0

CJJ81176_1593 mrp ATP/GTP-binding protein 3 4 1 1 1 2 1 2 1 26 1 8 1 31 1 10 2 25 1 12 0 0 0 0CJJ81176_1594 ispDF bifunctional 2-C-methyl-D-erythritol 4-

phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 0 0 0 0 0 0

proteinCJJ81176_1595 - DNA-binding response regulator, putative 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1596 - ATP-sulfurylase family protein 2 2 1 1 0 0 0 0 1 9 1 17 0 0 1 14 0 0 1 15 0 0 1 11CJJ81176_1597 pgpA phosphatidylglycerophosphatase A 2 11 2 8 1 1 1 4 1 8 1 16 1 12 2 38 1 6 0 0 0 0 0 0CJJ81176_1598 rpsT 30S ribosomal protein S20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1599 prfA peptide chain release factor 1 1 1 1 2 0 0 0 0 1 15 0 0 0 0 1 14 0 0 0 0 0 0 1 16CJJ81176_1600 - hypothetical protein 51 567 34 314 42 571 28 308 37 2588 21 1727 31 2759 22 1958 31 2921 19 1864 26 3122 15 1856CJJ81176_1601 chuA TonB-dependent heme receptor 140 4660 118 5448 129 4486 104 5126 105 15354 93 17117 102 16074 108 17032 102 16274 85 18533 91 17594 89 17718CJJ81176_1602 chuB hemin ABC transporter, permease protein 61 2259 59 2451 59 2410 54 2357 53 11244 51 10971 48 11723 49 11007 55 16529 44 14777 48 17394 42 14510CJJ81176_1603 chuC hemin ABC transporter, ATP-binding protein 37 1365 39 1810 35 1482 32 1753 31 5828 32 6122 31 5873 29 6318 28 5297 29 7012 25 5277 26 8283CJJ81176_1604 chuD hemin ABC transporter, periplasmic 45 1733 40 1746 40 1710 31 1789 34 6414 32 6040 34 6779 31 5866 36 6247 27 5904 35 6595 27 5205CJJ81176_1605 - hypothetical protein 63 13245 55 12318 58 13764 46 12937 45 65678 46 70289 47 63693 44 69968 49 68675 46 68127 48 64187 43 67289CJJ81176_1606 kgtP alpha-ketoglutarate permease 77 2962 71 3155 69 2957 64 2996 59 11070 55 11951 56 11729 56 13000 58 12515 52 13862 50 13410 52 14014CJJ81176_1607 mutY A/G-specific adenine glycosylase 67 2018 56 2404 61 2263 53 2670 50 5821 46 5170 50 5896 47 5174 53 6121 42 5593 49 6450 44 5080CJJ81176_1608 - hypothetical protein 27 120 19 106 23 140 11 81 16 509 11 284 15 567 9 233 16 502 10 238 12 416 9 229CJJ81176_1613 ribD riboflavin biosynthesis protein RibD 2 79 3 71 2 96 2 73 2 514 2 387 2 538 2 364 3 409 2 204 2 474 2 183CJJ81176_1614 - hypothetical protein 7 22 3 12 5 18 2 7 4 93 3 66 5 97 3 59 4 74 2 67 4 112 3 59CJJ81176_1615 sdaA L-serine ammonia-lyase 77 1551 71 4089 64 1739 60 4117 49 2422 34 1838 39 2550 37 1794 46 2359 38 3234 41 2314 38 3014CJJ81176_1616 sdaC serine transporter 31 136 6 20 19 127 2 17 19 1009 5 198 17 982 4 174 21 1062 2 140 15 1011 3 167CJJ81176_1617 - hypothetical protein 31 697 27 469 30 689 19 437 26 3962 19 3340 21 3931 20 3451 25 2159 18 1992 21 2116 18 2277CJJ81176_1618 - hypothetical protein 67 3810 62 3581 60 3468 51 3359 53 19640 51 20847 50 20478 51 20978 55 15840 45 19711 51 15288 44 21832CJJ81176_1619 exbB-2 TonB system transport protein ExbB 30 1148 24 933 26 1254 21 955 23 4692 19 3250 22 4431 20 3394 22 5829 17 4976 21 6174 20 4463CJJ81176_1620 exbD biopolymer transport exbD protein 27 589 22 427 25 560 21 420 19 2269 16 2182 19 2132 16 2038 21 2944 14 2417 19 2904 14 2026CJJ81176_1621 - TonB-dependent receptor, putative 23 303 21 180 21 309 14 203 14 790 11 767 13 844 13 921 17 1017 11 827 13 940 11 923CJJ81176_1622 - hypothetical protein 51 937 39 974 45 1034 36 1034 36 4446 34 4020 35 4427 33 4015 41 3969 30 2954 33 4093 27 2965CJJ81176_1623 - putative periplasmic protein 3 15 2 14 3 15 1 15 2 106 2 101 2 72 2 91 2 91 1 101 2 91 1 62CJJ81176_1624 - hypothetical protein 48 1074 42 1078 42 1232 34 1141 33 4692 36 4383 34 4692 34 4286 37 4667 29 4684 36 4924 29 4093CJJ81176_1625 aroC chorismate synthase 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1626 rnc ribonuclease III 3 6 1 3 1 5 0 0 1 43 1 25 1 31 1 50 1 25 1 12 1 13 1 22CJJ81176_1627 rnhA ribonuclease H 21 187 16 72 18 178 10 53 17 1096 13 323 16 1144 12 290 19 801 9 226 14 811 8 246CJJ81176_1628 - hypothetical protein 1 1 1 1 0 0 0 0 1 11 0 0 0 0 0 0 1 173 1 92 1 117 1 24CJJ81176_1629 dnaG DNA primase 4 7 2 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1630 - NifU family protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1631 - hypothetical protein 1 1 1 1 1 1 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_1632 murEUDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0

CJJ81176_1633 - hypothetical protein 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1634 - PDZ domain-containing protein 2 2 1 2 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1635 ispA geranyltranstransferase 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1636 tkt transketolase 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1637 - ABC transporter, permease protein, putative 36 679 29 564 30 617 28 536 31 2461 26 1900 28 2612 28 2072 34 2378 22 1828 30 2651 24 1980CJJ81176_1638 - ABC transporter, ATP-binding protein 30 395 19 412 26 506 16 445 19 2652 13 1504 16 2674 13 1458 17 1004 10 845 16 1090 13 772CJJ81176_1639 - ABC transporter, periplasmic 31 413 24 236 29 496 22 238 24 1856 21 1078 24 1967 22 1078 22 1116 16 958 20 1305 18 712CJJ81176_1640 - putative lipoprotein 22 292 15 99 19 226 10 89 16 972 10 692 15 978 11 647 15 1246 7 549 15 1389 5 515CJJ81176_1641 - hypothetical protein 17 238 13 150 16 230 9 131 11 1337 8 676 11 1332 9 747 11 1784 8 549 9 1736 10 623CJJ81176_1642 map methionine aminopeptidase 4 74 3 40 3 80 2 31 3 367 3 165 3 269 3 131 2 216 3 177 2 200 2 105CJJ81176_1643 murI glutamate racemase 6 17 4 16 4 21 2 17 3 140 1 62 2 122 1 72 1 126 2 107 1 89 1 59CJJ81176_1644 nlpC lipoprotein NlpC 19 111 11 50 16 127 6 48 13 560 9 243 15 604 10 255 15 488 9 250 12 540 8 213CJJ81176_1645 nhaA pH-dependent sodium/proton antiporter 27 148 18 87 19 171 10 80 18 1021 15 626 15 825 13 578 14 707 11 406 12 649 9 413CJJ81176_1646 nhaA-2 Na+/H+ antiporter NhaA 6 21 3 8 3 18 2 7 3 57 4 39 4 60 2 21 2 13 1 12 0 0 1 13CJJ81176_1647 - hypothetical protein 12 96 11 51 11 96 10 57 10 261 11 255 11 302 11 221 12 540 7 388 11 689 9 475CJJ81176_1648 - hypothetical protein 4 11 2 4 2 12 1 8 2 36 1 17 1 33 1 17 1 33 0 0 0 0 0 0CJJ81176_1649 - FTR1 family iron permease 96 2973 75 1719 88 2926 69 1804 72 12161 63 9328 72 12577 63 9343 77 13780 55 9678 68 13686 57 10833CJJ81176_1650 - hypothetical protein 24 520 19 286 22 518 17 308 19 10441 15 4535 18 10732 17 4707 20 15947 13 7070 18 16410 13 7228CJJ81176_1651 - hypothetical protein 71 1566 48 1302 60 1726 35 1274 49 8838 37 8619 47 9715 39 8808 51 7734 33 8833 47 8462 30 9252CJJ81176_1652 - ABC transporter, permease protein 73 1196 56 936 66 1340 47 968 52 6201 47 4919 52 6332 48 4845 56 5641 39 4412 49 5510 39 4813CJJ81176_1653 - ABC transporter, permease protein 43 1010 37 1094 42 956 32 1018 35 3896 27 2409 33 3948 29 2410 33 3761 22 3082 25 3870 25 3181CJJ81176_1654 - ABC transporter, ATP-binding protein 22 358 20 307 21 422 14 315 18 2185 15 2609 16 2227 15 2588 18 2386 13 3012 16 2458 14 3211CJJ81176_1655 - thiredoxin,-like protein 12 71 9 34 11 86 4 25 8 406 8 221 10 467 9 205 9 634 5 269 10 682 7 267CJJ81176_1656 - thioredoxin family protein 5 170 3 157 5 194 2 149 4 563 1 367 3 811 2 424 2 142 1 125 2 137 1 143CJJ81176_1657 - hypothetical protein 16 64 13 45 14 71 8 31 13 233 4 107 11 258 6 119 12 352 4 229 10 438 4 221

CJJ81176_1658 - hypothetical protein 15 116 13 62 11 101 8 57 9 630 9 406 10 633 10 326 7 274 5 186 6 241 3 148CJJ81176_1659 - hypothetical protein 10 203 9 183 9 209 7 202 9 785 6 872 8 854 5 769 8 1198 7 931 8 1105 7 1098CJJ81176_1665 - DNA ligase 27 140 22 137 20 161 16 140 14 633 8 313 16 670 13 402 16 516 8 363 12 522 8 275CJJ81176_1666 cgpA hypothetical protein 41 328 28 222 33 328 20 206 32 2123 24 1220 27 2109 24 1197 35 1934 14 952 25 2131 16 974CJJ81176_1667 - hypothetical protein 2 7 0 0 3 10 0 0 3 55 2 39 3 66 2 28 3 74 0 0 2 38 2 32CJJ81176_1668 eno phosphopyruvate hydratase 3 3 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 0 0CJJ81176_1669 recA recombinase A 24 93 12 35 16 89 8 38 18 476 9 136 16 496 7 121 18 370 3 46 13 357 6 111CJJ81176_1670 - succinyl-CoA ligase [ADP-forming] subunit 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1671 fliQ flagellar biosynthesis protein FliQ 5 85 2 4 5 98 1 3 3 1161 1 8 4 1160 0 0 3 746 0 0 2 753 1 11

CJJ81176_1672 murBUDP-N-acetylenolpyruvoylglucosamine reductase 2 2 2 2 0 0 1 2 1 8 0 0 0 0 0 0 1 6 0 0 0 0 0 0

CJJ81176_1673 - hypothetical protein 33 453 26 350 28 413 23 332 24 2019 18 1785 21 1834 18 1834 23 2102 15 1764 23 2154 14 1735CJJ81176_1674 cysQ cysQ protein 30 106 11 26 24 102 4 14 16 433 4 117 15 345 3 64 16 500 4 88 12 542 3 57CJJ81176_1675 gltA citrate synthase 70 641 54 289 62 695 40 330 67 5957 53 3058 70 6528 53 3057 61 4993 44 3875 58 5094 42 4042CJJ81176_1676 - sodium/hydrogen exchanger family protein 84 1064 63 550 78 1128 37 582 61 7189 47 5955 61 7651 54 6565 71 7033 41 5663 54 6828 44 6154CJJ81176_1677 bioB biotin synthase 2 2 1 1 0 0 0 0 1 34 1 31 1 50 1 24 1 57 1 37 1 46 1 35CJJ81176_1678 topA DNA topoisomerase I 12 19 6 8 7 16 3 7 4 76 2 31 5 79 3 43 8 113 2 37 3 56 1 32CJJ81176_1679 - major facilitator superfamily protein 72 2803 62 2780 64 3099 55 3045 55 11036 52 11442 54 11609 54 11968 52 13355 44 14490 46 14279 48 15106CJJ81176_1680 - dipeptidyl-peptidase 127 3438 118 3883 121 3763 105 3948 105 16265 90 16847 101 16682 94 17296 103 16655 85 18667 102 17467 84 18158CJJ81176_1681 - hypothetical protein 30 672 28 664 29 715 26 669 26 3044 26 2471 25 2905 25 2581 27 3103 19 2319 24 2910 23 2285CJJ81176_1682 - hypothetical protein 21 669 19 402 21 476 17 365 20 2338 18 2261 18 2430 17 2467 19 2195 18 2081 20 2377 18 2140CJJ81176_1683 - hypothetical protein 19 1187 18 1399 17 1090 16 1356 17 4507 14 5240 16 4419 15 4700 15 4785 15 4723 15 5107 14 3909CJJ81176_1684 - hypothetical protein 16 200 14 170 15 229 13 183 14 1036 14 736 14 1001 12 650 15 825 14 867 12 862 11 809CJJ81176_1685 secY preprotein translocase subunit SecY 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1686 rplO 50S ribosomal protein L15 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1687 rpsE 30S ribosomal protein S5 2 3 2 2 1 3 1 2 0 0 0 0 1 12 0 0 1 8 0 0 0 0 0 0CJJ81176_1688 rplR 50S ribosomal protein L18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1689 rplF 50S ribosomal protein L6 1 2 1 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1690 rpsH 30S ribosomal protein S8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1691 rpsN 30S ribosomal protein S14 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1692 rplE 50S ribosomal protein L5 0 0 1 1 0 0 0 0 1 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1693 rplX 50S ribosomal protein L24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1694 rplN 50S ribosomal protein L14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1695 rpsQ 30S ribosomal protein S17 4 4 1 1 1 2 0 0 1 32 2 19 1 19 1 17 1 8 1 21 0 0 1 19CJJ81176_1696 rpmC 50S ribosomal protein L29 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1697 rplP 50S ribosomal protein L16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1698 rpsC 30S ribosomal protein S3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1699 rplV 50S ribosomal protein L22 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1700 rpsS 30S ribosomal protein S19 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1701 rplB 50S ribosomal protein L2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 0 0CJJ81176_1702 rplW 50S ribosomal protein L23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 7 0 0 0 0 0 0 0 0CJJ81176_1703 rplD 50S ribosomal protein L4 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1709 - hypothetical protein 5 89 4 106 4 107 4 133 4 1044 3 868 3 1150 3 806 3 165 3 88 3 137 3 78CJJ81176_1731 hup DNA-binding protein HU 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1732 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1741 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1742 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1743 - putative periplasmic protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1744 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_1746 - hypothetical protein 24 230 22 128 23 238 17 136 18 1053 13 822 17 1129 14 801 17 1144 10 958 16 1232 10 925CJJ81176_1747 - hypothetical protein 6 89 5 92 5 115 5 109 3 323 3 231 4 393 4 274 6 266 4 269 4 279 3 216CJJ81176_1754 rpmJ 50S ribosomal protein L36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pTet0001 - hypothetical protein 25 9658 26 8606 26 8346 21 8361 25 33333 20 32162 22 36773 22 37636 20 29343 22 29947 19 33028 23 35196CJJ81176_pTet0002 - hypothetical protein 4 2325 3 3643 4 2788 3 3415 4 12890 3 6857 4 10220 3 5483 2 4241 1 2824 1 4048 2 2854CJJ81176_pTet0003 - cpp7 5 393 5 272 5 533 1 219 3 1898 2 439 2 1523 2 486 0 0 0 0 0 0 1 65CJJ81176_pTet0004 - cpp8 22 2297 20 2224 16 2471 15 2202 12 9832 11 6528 11 10243 12 6646 12 7771 13 3824 9 7002 15 4496CJJ81176_pTet0005 - cpp9 12 1443 12 957 11 1446 9 1058 10 3697 7 3309 8 3622 7 3245 8 4388 8 3784 7 5140 7 4066CJJ81176_pTet0006 - cpp10 9 389 7 211 8 540 7 274 4 1219 3 878 4 1430 6 1284 3 1005 3 284 5 1700 5 521CJJ81176_pTet0007 - cpp11 17 2291 15 1784 14 3098 13 1901 13 10212 11 5284 12 9735 9 5171 9 5883 11 5568 8 6355 10 7102CJJ81176_pTet0008 - cpp12 3 44 1 7 0 0 1 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pTet0009 - cpp13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

CJJ81176_pTet0010 - cpp14 160 39990 148 35362 141 41498 122 37205 112 154335 99 140553 105 162387 100 154187 108 157157 111 138679 98 176919 119 137044CJJ81176_pTet0011 - cpp16 33 7550 26 6646 23 9771 20 6683 20 35451 16 33497 16 36704 18 35744 21 38585 17 33082 18 40314 18 32394CJJ81176_pTet0012 - cpp17 41 7552 35 5208 36 8567 30 5607 28 40407 28 25306 28 44178 27 26617 28 30397 29 21014 24 32178 29 26439CJJ81176_pTet0013 - cpp18 20 2129 16 820 13 2220 9 812 8 7254 5 3346 7 7613 9 3765 9 8188 9 3622 7 7205 8 4287CJJ81176_pTet0014 - cpp19 9 863 8 589 6 1212 3 651 6 7254 4 4919 7 7590 3 6507 3 5344 3 5392 3 5019 3 7128CJJ81176_pTet0015 - cpp20 11 435 8 403 7 458 6 404 5 1439 4 1243 3 1476 3 972 5 2059 3 1608 3 1538 3 2215CJJ81176_pTet0016 - cpp21 14 1933 10 1312 11 1834 9 1346 9 6834 8 5686 9 6460 8 5830 10 8678 7 4662 6 7650 8 5512CJJ81176_pTet0017 - cpp22 2 17 0 0 0 0 1 14 0 0 1 91 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pTet0018 - cpp23 3 162 2 284 2 189 3 346 1 639 3 658 1 669 2 868 1 907 2 622 1 769 2 599CJJ81176_pTet0019 - hypothetical protein 6 549 4 1053 4 860 3 1041 4 1219 3 713 4 1453 3 798 2 515 2 230 2 486 2 222CJJ81176_pTet0020 - hypothetical protein 7 112 4 110 3 72 3 62 3 380 2 256 4 554 2 174 1 270 1 189 1 202 2 248CJJ81176_pTet0021 - hypothetical protein 2 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pTet0022 - hypothetical protein 4 3787 4 3975 4 4037 4 3977 4 7434 3 4516 4 8351 3 5674 3 3775 3 2743 3 3279 3 3479CJJ81176_pTet0023 - cpp26 3 42 3 39 0 0 0 0 1 200 0 0 1 185 0 0 0 0 1 68 0 0 1 65CJJ81176_pTet0024 - cpp27 20 1292 16 1406 13 1277 15 1302 11 2738 8 1371 10 3022 6 1024 9 2697 10 1514 7 2429 8 1082CJJ81176_pTet0025 - hypothetical protein 13 1384 11 765 13 1556 11 808 12 7494 10 4315 10 8190 10 4477 12 6815 8 3568 10 5950 8 4926CJJ81176_pTet0026 - cpp29 7 257 7 209 6 210 4 161 2 300 1 128 3 461 2 243 2 221 1 122 1 162 2 169CJJ81176_pTet0027 - cmgB2 7 1845 7 2743 7 2048 7 3237 6 15467 6 11355 6 17395 6 13083 6 25837 6 13352 6 32461 7 13565CJJ81176_pTet0028 - cmgB3/4 85 29325 81 25733 76 30085 70 24538 70 139607 59 112120 65 147969 63 117228 66 137203 63 136220 59 146805 62 145292CJJ81176_pTet0029 - cpp32 21 3934 17 3440 20 3573 15 3459 18 13349 16 9490 18 14142 16 10203 19 18998 18 14149 17 18457 19 17253CJJ81176_pTet0030 - cpp33 22 3437 18 3703 19 4030 18 3634 15 17985 12 14152 14 19586 12 15287 13 14904 15 11635 11 13721 16 13552CJJ81176_pTet0031 - single-strand binding protein family 10 4849 12 11398 9 5273 9 8875 9 5835 9 4626 8 6160 7 5171 9 4976 10 3405 8 5383 8 3636CJJ81176_pTet0032 - cpp35 18 11172 12 5638 13 6295 11 5696 10 23121 9 27134 9 22908 10 24917 10 33461 11 25014 8 32988 12 21253CJJ81176_pTet0033 - cmgB5 38 11869 34 19176 36 11843 28 19674 31 71762 28 97840 31 76568 30 106713 29 72266 29 96827 27 90625 31 104702CJJ81176_pTet0034 - cmgB6 39 23113 38 22710 33 23266 33 23665 30 114447 29 138871 28 125568 30 156564 30 128035 31 200181 28 142717 31 196946CJJ81176_pTet0035 - hypothetical protein 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pTet0036 - cmgB8 24 9616 24 5432 22 9548 19 5974 18 24480 17 16895 19 27476 18 20076 22 34883 22 20028 21 36630 22 22856CJJ81176_pTet0037 - cmgB9 42 18771 36 29908 35 20406 29 29888 29 97781 24 105246 25 95924 26 111484 28 120068 24 84583 24 111793 27 103008CJJ81176_pTet0038 - cmgB10 31 9081 29 8693 27 9971 27 8594 21 28797 21 18723 22 30683 22 19798 20 26573 19 23622 17 32380 20 23286CJJ81176_pTet0039 - cmgB11 37 10566 35 7067 33 8666 29 7559 25 45963 22 40902 23 50707 25 45583 29 42262 29 33947 26 42014 27 38271CJJ81176_pTet0040 - cmgD4 78 13146 72 10921 70 11940 60 10992 57 38149 55 33515 53 41871 53 37757 55 32211 55 26771 44 33473 58 31795CJJ81176_pTet0041 - cpp44 17 7451 15 10044 17 8814 15 10560 14 42346 13 36295 13 39380 13 32916 12 40006 16 36704 13 41892 14 35222CJJ81176_pTet0042 - cpp45 21 4392 18 3985 20 4123 17 3730 16 17766 17 18358 15 17441 15 17421 17 19219 18 17068 13 15947 18 15389CJJ81176_pTet0043 - cpp46 38 7346 31 6547 31 8553 30 7018 29 37150 25 46278 29 43186 28 48966 26 30912 29 28785 23 37399 30 29267CJJ81176_pTet0044 - cpp47 25 25305 25 14837 23 16052 22 12574 20 60391 18 52787 19 59773 19 46936 14 54960 18 48123 14 47235 18 43705CJJ81176_pTet0045 - DNA topoisomerase III 66 9014 67 7278 61 10670 54 7327 48 38689 43 27628 42 38480 43 28075 41 49273 42 36798 34 46547 45 43444CJJ81176_pTet0046 - cpp50 70 25351 62 29319 57 29634 55 31793 56 73600 46 61783 43 80282 48 70760 50 80013 48 63110 39 80992 44 67343CJJ81176_pTet0047 - hypothetical protein 3 1338 3 2175 3 2007 3 2891 3 3777 3 2542 3 4360 3 3349 1 760 1 432 1 567 1 704CJJ81176_pTet0048 - tetO 63 73534 65 75138 63 62775 60 74731 55 275377 56 276882 56 307357 57 299837 54 220060 56 284426 50 236013 53 357510CJJ81176_pTet0049 - hypothetical protein 2 320 2 446 2 365 2 486 2 1259 2 951 2 1384 2 1145 2 1373 2 2487 2 2186 2 2332CJJ81176_pTet0050 - hypothetical protein 3 61 2 78 3 107 3 96 1 80 2 183 1 138 1 69 1 123 2 243 0 0 2 235CJJ81176_pTet0051 - hypothetical protein 14 7291 14 6447 15 6130 10 7056 10 36031 11 60997 10 38942 11 56514 11 49224 12 87813 9 57030 11 85403CJJ81176_pTet0052 - cpp4 11 1500 7 967 10 1335 7 894 5 2578 5 2304 5 3068 4 1891 5 2868 6 1608 4 3198 6 1942CJJ81176_pVir0001 - VirB8 26 7301 25 7480 24 8202 24 9105 23 31630 23 46290 23 32256 24 50962 20 32680 22 30996 20 34734 22 28137CJJ81176_pVir0002 - VirB9 40 9187 40 17763 37 11261 36 15831 36 46192 35 43962 35 49160 36 45576 33 24262 32 23061 32 23134 34 21889CJJ81176_pVir0003 - VirB10 52 129693 50 60379 50 43575 47 67708 47 288675 46 597579 43 315370 47 611580 41 371590 46 390828 37 417073 42 383753CJJ81176_pVir0004 - hypothetical protein 4 14 4 25 2 25 4 31 2 54 0 0 2 55 1 18 1 25 0 0 0 0 2 20CJJ81176_pVir0005 trbB conjugative transfer regulon protein 44 16425 41 14604 40 10920 35 15871 38 80351 37 127892 36 80656 36 132620 36 80924 37 152904 34 90127 39 150455CJJ81176_pVir0006 - hypothetical protein 15 3060 17 5997 16 3941 13 6218 12 20265 13 29226 12 21398 11 28055 13 28169 12 42962 10 30222 12 39909CJJ81176_pVir0007 - hypothetical protein 79 44011 74 21982 71 22882 69 21963 64 102659 63 105991 64 107490 61 113520 62 94509 60 102716 59 99817 61 101884CJJ81176_pVir0008 - hypothetical protein 3 3027 3 2592 4 4710 3 2369 3 13939 3 7967 3 14335 3 8092 3 14044 3 7127 3 12215 3 6954CJJ81176_pVir0009 - hypothetical protein 27 5656 23 5008 26 6326 22 5040 22 22141 18 21083 22 23448 21 22192 21 31741 20 26414 19 32495 21 24908CJJ81176_pVir0010 - hypothetical protein 5 368 6 362 4 467 5 351 3 1171 3 1139 2 1193 3 1096 4 1399 3 1290 3 1490 3 1119CJJ81176_pVir0011 - hypothetical protein 65 32956 67 35350 58 34105 59 36428 56 245847 57 312382 54 267945 55 325739 51 302882 48 252318 45 341248 50 235859CJJ81176_pVir0012 - DNA topoisomerase I 75 24806 73 29727 69 36322 64 32813 66 167549 62 127056 65 175818 63 135140 58 72785 58 56382 57 77853 57 60753CJJ81176_pVir0013 - hypothetical protein 14 4349 12 4242 12 4224 13 4474 11 17909 11 15173 11 19320 11 16237 11 17182 12 15258 11 17881 12 18298CJJ81176_pVir0014 - hypothetical protein 10 3028 9 1239 9 1274 9 1061 8 8178 8 9065 8 8968 8 9051 9 7564 8 4997 7 7762 8 4457CJJ81176_pVir0015 - hypothetical protein 14 3044 14 3424 13 4493 13 3314 13 22730 12 15890 12 23662 12 15790 12 29173 12 22742 12 30323 13 20425CJJ81176_pVir0016 - hypothetical protein 10 743 9 630 9 1226 8 733 6 6026 6 4696 6 6591 6 4782 5 5980 4 4751 5 5396 4 3412CJJ81176_pVir0017 - hypothetical protein 18 2346 18 2891 17 3623 15 3091 12 3422 10 2249 10 3629 10 2863 10 13715 11 11872 9 15810 10 11921CJJ81176_pVir0018 - hypothetical protein 23 2129 22 2092 22 2676 22 2098 17 5659 16 3803 17 5535 18 3947 17 4347 17 3645 14 3906 16 4321

CJJ81176_pVir0019 - hypothetical protein 5 695 4 884 5 987 3 690 3 4086 3 2151 3 3792 3 2282 3 5841 3 4938 3 5859 2 3952CJJ81176_pVir0020 - hypothetical protein 18 7140 17 6834 14 11669 15 7336 14 26996 12 16340 13 29462 13 17449 12 44182 13 21564 12 51175 13 21631CJJ81176_pVir0021 - hypothetical protein 5 826 5 1501 5 1385 5 1713 5 6217 5 7171 5 6388 5 6483 5 4142 5 3466 4 4369 5 2662CJJ81176_pVir0022 - hypothetical protein 18 4146 17 3084 16 3122 13 2859 10 9884 8 7130 11 11069 8 8032 10 8254 9 8189 9 9184 9 9487CJJ81176_pVir0023 - hypothetical protein 13 2507 14 4106 12 3390 12 4082 11 9741 10 7561 10 10675 10 9358 11 9528 10 10027 9 11643 11 12053CJJ81176_pVir0024 - hypothetical protein 23 19017 24 20787 21 28392 23 23384 17 70579 19 57802 18 77097 19 61184 20 101379 19 121364 20 102755 21 126226CJJ81176_pVir0025 - para protein 13 464 11 376 10 704 9 456 5 1484 5 535 5 1528 4 578 5 1429 4 491 3 1389 4 409CJJ81176_pVir0026 - hypothetical protein 4 7 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pVir0027 - RepE replication protein, putative 2 3 2 4 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pVir0028 - hypothetical protein 26 7268 24 7904 26 9144 20 8709 21 25849 19 15909 21 29477 18 20068 19 22438 20 20714 19 22065 19 25933CJJ81176_pVir0029 - hypothetical protein 38 5229 37 3356 37 5310 36 3285 31 10255 30 7149 33 10036 30 7502 31 11976 30 9598 29 11761 32 9953CJJ81176_pVir0030 - cpp45 31 7482 30 7102 28 7805 28 6920 22 27667 22 19765 21 28978 19 21558 20 17172 16 20137 18 18470 19 21884CJJ81176_pVir0031 - hypothetical protein 9 8641 8 3353 9 3060 9 3502 5 16758 5 20608 5 17991 5 22061 6 15323 5 11288 6 14261 6 13714CJJ81176_pVir0032 - hypothetical protein 8 431 8 884 4 743 5 1091 3 3619 4 3362 3 3555 6 3477 3 4102 3 5813 2 3342 3 7528CJJ81176_pVir0033 - hypothetical protein 19 853 18 1175 18 1258 18 1179 12 2833 11 2482 11 2841 11 2166 9 3093 9 2597 8 2904 8 2169CJJ81176_pVir0034 - hypothetical protein 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0CJJ81176_pVir0035 - hypothetical protein 9 327 7 133 8 234 8 182 6 5907 6 1500 7 5823 7 1418 6 370 4 341 6 572 4 201CJJ81176_pVir0036 - hypothetical protein 11 2567 10 3817 10 2867 10 2970 10 1474 10 984 10 1575 10 1126 9 824 8 451 7 758 9 473CJJ81176_pVir0037 - hypothetical protein 10 6213 10 9552 10 13662 10 13505 8 50172 7 69836 9 54156 9 86925 8 41519 8 64757 8 49121 9 68239CJJ81176_pVir0038 - pTet39 29 14425 27 19150 25 16430 26 19632 22 34571 25 30098 22 35589 21 31922 22 35173 22 35878 18 35904 20 48817CJJ81176_pVir0039 - hypothetical protein 16 1051 14 1587 13 1420 13 1830 10 8536 10 8231 8 9432 9 9977 9 3552 9 3763 8 4159 8 4356CJJ81176_pVir0040 - hypothetical protein 8 1766 8 756 8 897 8 851 8 1553 6 1280 7 1543 6 1424 10 3058 10 1907 8 2955 10 2093CJJ81176_pVir0041 - hypothetical protein 11 8515 9 12258 9 14905 8 14184 7 30537 8 34897 9 33573 10 36913 7 27519 7 34831 6 31342 7 39045CJJ81176_pVir0042 - hypothetical protein 8 2183 8 3108 7 2474 6 3235 5 6605 5 7105 6 6754 5 7180 5 7339 5 10030 5 6878 6 13298CJJ81176_pVir0043 - hypothetical protein 7 1024 7 2241 7 1436 7 2208 7 3984 7 3743 6 4202 6 3763 5 2008 7 1891 6 2323 7 2424CJJ81176_pVir0044 - hypothetical protein 13 2922 13 5849 11 3906 13 6034 10 32733 10 33894 12 34996 10 35837 8 31451 8 24531 7 34558 7 28649CJJ81176_pVir0045 - hypothetical protein 22 7987 20 16034 19 12260 18 16049 16 73705 14 64662 15 74295 15 66556 14 48938 16 64966 14 48423 16 67595CJJ81176_pVir0046 - hypothetical protein 9 1427 9 1453 7 2533 8 1653 7 13666 7 12506 7 11408 7 10499 7 10862 7 7790 7 9765 7 4514CJJ81176_pVir0047 - hypothetical protein 7 8256 10 12255 6 9992 6 12550 6 54594 5 40144 6 57138 5 41748 5 39540 6 48249 5 40105 6 58037CJJ81176_pVir0048 - hypothetical protein 7 196 7 213 7 292 7 226 7 541 4 456 6 639 5 542 4 480 4 357 3 556 3 448CJJ81176_pVir0049 - hypothetical protein 63 1771 48 2138 46 2222 40 2128 40 10388 41 11458 45 10375 36 11005 44 16892 41 18528 37 15591 38 14276CJJ81176_pVir0050 - hypothetical protein 21 1498 19 1320 17 2804 14 1759 14 9537 14 7851 16 11283 16 9563 14 13235 14 9037 13 14033 14 9239CJJ81176_pVir0051 - hypothetical protein 18 8178 17 5581 17 3397 17 5275 15 13598 16 20322 15 14362 15 20431 16 19845 15 36202 15 20019 14 38401CJJ81176_pVir0052 - hypothetical protein 9 4567 9 8645 7 5563 7 7307 7 36601 8 54395 7 38936 7 56069 7 12031 7 13447 7 11196 7 14113CJJ81176_pVir0053 - VirB4 89 14049 86 19376 84 18473 79 19823 72 91787 70 94351 72 97010 75 104728 68 129248 71 109881 66 134678 72 119411

1. Columns 4 to 27 represent the number of sequencing reads for the indicated genes in the following categories: B1: biological replicate 1T1: technical replicate 10hr: before infection2hr: 2hr after infectionIN: unique insertions in the gene read: number of reads (i. e. transposon inserstions) for the indicated gene within the analyzed pool