mcmp 422: immunology class mwf 11:30-12:20 instructors –dr. geahlen –dr. harrison –dr. hazbun...

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MCMP 422: Immunology Class MWF 11:30-12:20 • Instructors Dr. Geahlen Dr. Harrison Dr. Hazbun (RHPH 406D, 496-8228, [email protected]) • Objectives Course Policies • Grading

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Page 1: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

MCMP 422: Immunology• Class MWF 11:30-12:20• Instructors

– Dr. Geahlen– Dr. Harrison– Dr. Hazbun (RHPH 406D, 496-8228,

[email protected])

• Objectives• Course Policies• Grading

Page 2: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

The Immune System

Second Edition

Chapter 1

Elements of the Immune Systemand their Roles in Defense

Copyright © 2005 by Garland Science Publishing

Peter Parham

Page 3: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Chapter 1Summarizes all of immunology

Get a good Foundation

Before class: Read the textbook in general and try to understand all the terminologies in bold.

During class: Take good notes because I will be adding information that will be tested

After class: Review material to commit to long-term memory

Page 4: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

What components make up the immune system?Cells, organs, cytokines and molecules involved in the

immune system

What is the goal of the immune system?To clear pathogens and cancer cells in our body

How do we classify immune responses?Innate and adaptive immune responses

What are the side effects of the immune system?Autoimmune diseases, Allergies, Transplantation Rejection

Lecture Concepts

Page 5: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

• Immunology: the science of how the body responds to foreign organisms (e.g. pathogens) or substances (e.g. allergen)

•Immune system: the organs, cells and molecules that defend and respond to pathogens/allergens

1. Tissues/organs

2. Cells

3. Blood borne proteins

Page 6: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Origin of Immunology - individuals who survived a disease seemed to be untouched upon re-exposure

Vaccination/Immunization - procedure where disease is prevented by deliberate exposure to infectious agent that cannot cause disease.

Page 7: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-2

Page 8: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Part of body BacteriaHead (scalp) 1,000,000 /cm2Surface of skin 1000 /cm2Saliva 100,000,000 /gNose mucus 10,000,000 /gFaeces over 100,000,000 /g

How Clean are You?

Page 9: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

• Four Classes

• Opportunistic pathogens

• Pathogen-Host relationship

Diversity of Pathogens

Page 10: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Defenses against Pathogens

Physical Defenses1. Skin

2. Mucosal surfaces

Immune Defenses1. Innate2. Adaptive

Page 11: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-4

Page 12: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Pathogen Recognition

Signal

Effector mechanisms

Effector Cells Complement

Innate immunity - “naïve” everyday immunity Acquired immunity - “specialized” immunity

Immunity: Basic Parts

(Binding event)(Foreign)

(Self)

Immunedisorders

Page 13: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-5 part 1 of 2

ComplementEffector cellEndocytosis

One way Immunity Works

Page 14: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-5 part 2 of 2

Page 15: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-6

CytokinesInflammationPhagocytosisInflammatory cells

Innate Immunity

Page 16: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

What if Innate Immunity is not Enough?

• Innate immunity keeps us healthy most of the time

• Some pathogens escape the innate immune process

• Need a specific system to adapt to a specific pathogen

• Adaptive immune response

Page 17: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-7Characteristics of Innate vs Adaptive Immunity

Lymphocytes - white blood cells that increase the immune response to ongoing infection

Page 18: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Innate vs Adaptive Molecular Recognition

• Most important difference: Receptors used to recognize pathogens

• Innate immunity: Receptors recognize conserved structures present in many pathogens

Pathogen-associated Molecular Patterns: LPS, peptidoglycan, lipids, mannose, bacterial DNA and viral RNA

• Adaptive immunity: Receptors recognize a specific structure unique to that pathogen

Page 19: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-11 part 1 of 2Flowchart of Hematopoiesis

Page 20: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-11Flowchart of Hematopoiesis

Page 21: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Myeloid Lineage

Page 22: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-9 part 3 of 6Neutrophils:Most abundantPhagocyteEffector cells of Innate ImmunityShort-lived - Pus

Eosinophils:Worms/intestinal parasitesAmplify inflammationBind IgEVery Toxic - Pathogen and hostChronic asthma

Basophils:RareUnknown functionBind to IgE

Granulocytes (Myeloid progenitor)Polymorphonuclear leukocytes (PMLs)

Page 23: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-9 part 5 of 6

Page 24: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-13

Page 25: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course
Page 26: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Lymphoid Lineage Cells

Page 27: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-9 part 2 of 6

Lymp

Page 28: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-9 part 1 of 6

Page 29: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Erythroid Lineage

Page 30: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-9 part 6 of 6

Page 31: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-11 part 2 of 2Lymphoid Myeloid Erythroid

Page 32: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-12

Page 33: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-14

Page 34: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-15

Sites of Lymphoid Tissue

Primary and SecondaryGALT, BALT, MALTLymphRecirculation

Page 35: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-16

Draining Lymph nodeEdemaAfferent and Efferent

Page 36: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-17 part 1 of 2

Page 37: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

B-cell area(follicle)

Page 38: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-19Anatomy of immune function in the Spleen

Page 39: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-19 part 1 of 2

Page 40: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-19 part 2 of 2

Page 41: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-20

Page 42: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Adaptive Immunity

1. Vertebrates only

2. Specificity- recognition modules - BCR, Ab and TCR- gene rearrangement is the source of diversity- clonal selection

3. Small lymphocytes- types and sub-types- functions

Page 43: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Recognition concept

Receptor or Antibody molecule

Antigen - structure recognized by an Ab, BCR or TCR

Epitope - particular sub-structure of the Ag that is bound

Affinity - how much a molecule like to bind to a structure

Page 44: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

B-cellsBCR is Immunoglobulin (Ig)Plasma cells - effector cells that secrete Ab

T-cellsTc = cytotoxic (CD8+)

TH = helper T-cells (CD4+)Th1 (inflammation)Th2 (help B-cells make AB)

Small lymphocyte sub-types

Page 45: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Recognition modules of Adaptive immunity

B cells T cells

Page 46: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

B-cells T-cell

Page 47: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-25

Intracellularpathogens

Extracellular pathogens

Page 48: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-26MHC class I communicates with Tc cells

Page 49: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-27MHC class II communicates with TH cells

Page 50: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Parasite +

Mast cell

Inflammation

Mast cell activated

Expel and/or destroy

pathogen

• Neutralization• Opsonization1. Inflammation

Parasitic infection

Page 51: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Principles of Adaptive Immunity

DiversitySpecificityMemorySelf-tolerance

Page 52: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Gene Rearrangement is the source of Diversity

Germline configuration

Diversity1. Alternative combinations2. Imprecise joints3. Different types of chains4. B-cells - somatic hypermutation

In the absence of antigen

Page 53: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Clonal Selection

1. Each cell = one receptor2. Millions of lymphocytes

are generated3. Small subset will

recognize a pathogen4. Proliferation and

differentiation5. Acquired immunity - the

adaptive immunity provided by immunological memory

Page 54: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-22

Page 55: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-30

Page 56: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-31

Page 57: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-28

Mechanism of Self-tolerance

Page 58: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Immunodeficiencies

Inherited deficiencies

Stress induced

Pathogen caused deficiencies

Page 59: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-32IgGCD4 TH1CD8 CTL

Page 60: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-33Insulin-Dependent Diabetes Mellitus

Page 61: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-34

Page 62: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-10

Page 63: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-29 part 1 of 2

Page 64: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-29 part 2 of 2

Page 65: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-31 part 1 of 3

Page 66: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-31 part 2 of 3

Page 67: MCMP 422: Immunology Class MWF 11:30-12:20 Instructors –Dr. Geahlen –Dr. Harrison –Dr. Hazbun (RHPH 406D, 496-8228, thazbun@purdue.edu) Objectives Course

Figure 1-31 part 3 of 3