metabolism photosynthesis cellular respiration
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Metabolism Photosynthesis Cellular Respiration. Chapters 8-10. Metabolism and Energy. Organisms are energy transformers!. Metabolism Catabolism Anabolism Bioenergetics Energy Kinetic Heat/Thermal Light Energy Potential Chemical. Metabolism and Energy. - PowerPoint PPT PresentationTRANSCRIPT
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MetabolismPhotosynthesis
Cellular Respiration
Chapters 8-10
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Metabolism and Energy
Metabolism Catabolism
Anabolism
Bioenergetics
Energy Kinetic
Heat/Thermal
Light Energy
Potential
Chemical
Organisms are energy transformers!
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Metabolism and Energy
Metabolism Metabolic pathway begins with a
specific molecule, which is then altered in a series of defined steps leading to a specific product
Each step is catalyzed by a specific enzyme
Organisms are energy transformers!
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Metabolism and Energy
Metabolism Catabolism
Energy released (helps to drive anabolic pathways).
Ex: cellular respiration sugar put in to the body is broken
down to do work in the cell (movement, active transport, etc).
Organisms are energy transformers!
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Metabolism and Energy
Metabolism Catabolism Anabolism
sometimes called biosynthetic pathways- Ex: synthesis of a protein from
amino acids.
Energy required/absorbed.
Organisms are energy transformers!
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Metabolism and Energy
Metabolism Catabolism Anabolism
Bioenergetics the study of how energy flows through
living systems.
Organisms are energy transformers!
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Metabolism and Energy Metabolism
Catabolism Anabolism
Bioenergetics
Energy the capacity to cause change. Some forms of energy can be used to do
work- or move matter against opposing forces Ex: (friction and gravity) Ability to rearrange a collection of
matter
Organisms are energy transformers!
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Metabolism and Energy
Energy Kinetic
Relative motion of objects
moving objects can perform work by imparting motion to other matter.
Ex: Moving water through a dam turns turbines, moving bowling ball knocks over pins
Organisms are energy transformers!
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Metabolism and Energy
Energy Kinetic
Heat/Thermal comes from the movement of
atoms or molecules associated with kinetic energy
Organisms are energy transformers!
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Metabolism and Energy
Energy Kinetic
Heat/Thermal
Light EnergyType of energy that can be harnessed to perform work
Ex. Powering Photosynthesis
Organisms are energy transformers!
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Metabolism and Energy
Kinetic Heat/Thermal Light Energy
Potential Non-kinetic energy because of location or
structure, height, chemical bonds, etc.
Organisms are energy transformers!
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Metabolism and Energy Kinetic
Heat/Thermal Light Energy
Potential Chemical
the potential energy available for release by a reaction.
Ex: Glucose is high in chemical energy and the process of glycolysis breaks it down. As bonds are broken, energy is released, but bonds also reform to make new molecules, thus it uses some energy.
Organisms are energy transformers!
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Metabolism and Energy
Organisms are energy transformers!
All original energy comes from light. (photosynthesis-
primary producer- consumer- who changes
it from chemical to kinetic and releases
thermal.
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Thermodynamics
What is Thermodynamics?
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Thermodynamics
The energy transformations that occur in a collection of matter
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Thermodynamics
Thermodynamics System vs. Surroundings
Isolated System vs. Open System
First Law of Thermodynamics
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Thermodynamics
Two Laws of Thermodynamics govern energy exchange:
First Law of Thermodynamics
Second Law of Thermodynamics
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Thermodynamics Two Laws of Thermodynamics govern
energy exchange:
First Law of Thermodynamics energy cannot be created or destroy-
Only transferred or transformed
Known as Principle of conservation of energy
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Thermodynamics Second Law of Thermodynamics
During energy transfer, some energy become unusable energy (unavailable to do work)
Entropy (S) – Measure of disorder or randomness
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Thermodynamics So, What is the Second Law of
Thermodynamics? Every energy transfer or transformation
increases the entropy of the universe
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Thermodynamics Spontaneous (Energetically Favorable) vs.
Nonspontaneous Processes
Leads to the second way we state the 2nd Law of Thermodynamics: For a process to occur spontaneously, it must
increase the entropy of the universe
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Think-Pair-Share
How does the second law of thermodynamics help explain the diffusion of a substance across a membrane?
If you place a teaspoon of sugar in the bottom of a glass of water, it will dissolve completely over time. Left longer, eventually the water will disappear and the sugar crystals will reappear. Explain these observations in terms of entropy.
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Gibbs Free Energy Free Energy
Portion of system’s energy that can perform work when temp and pressure are uniform throughout system
ΔG = free energy of a system -ΔG = spontaneous reaction
+ΔG = nonspontaneous reaction
ΔG = 0 = Dead Cell (can do no work)
ΔG = ΔH – TΔS
ΔG = ΔGfinal – ΔGinitial
Enthalpy
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Gibbs Free EnergyΔG = ΔH – TΔS
ΔG = ΔGfinal – ΔGinitial
ΔH = he change in the system’s enthalpy
What is enthalpy? Total energy
ΔS = change in system’s entropy
T = absolute Temperature in Kelvin
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Gibbs Free Energy
Endergonic vs. Exergonic Reactions
+ΔG -ΔG
Non-Spontaneous Spontaneous
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Warm Up Exercise
Glow in the dark necklaces are snapped in a way that allows two chemicals to mix and they glow. Is this an endergonic or exergonic reaction? Explain.
In simple diffusion, H+ ions move to an equal concentration on both sides of a cell membrane. In cotransport, H+ ions are pumped across a membrane to create a concentration gradient. Which situation allows the H+ ions to perform work in the system?
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ATP and Cellular Work
Three Types of Work Chemical
Transport
Mechanical
Energy Coupling Phosphorylated
Intermediate
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ATP Hydrolysis
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ATP and Cellular Work
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ATP Cycle
The body regenerates 10 million molecules of ATP per second per cell!
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Flashback
Name the four major macromolecules and their monomers.
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Enzymes
Enzymes- biological catalyst
Substrates
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Enzymes
Activation Energy (EA)
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Enzymes
Enzymes catalyze reactions by lowering the activation energy.
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Enzymes
Enzyme + Substrate = Enzyme-Substrate Complex
Enzyme Enzyme- Enzyme + Substrate +Substrate(s) Complex Product(s)
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Enzymes
Active Site
Induced Fit
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Warm Up Exercise
Explain the affect that enzymes have on activation energy.
What is a substrate?
Describe what is meant by induced fit.
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Effects of Environment
Temperature
pH
Concentration of Enzyme
Concentration of Substrate
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Enzymes
Cofactors
Coenzyme
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Enzyme Action
Competitive Inhibitors
Noncompetitive Inhibitors
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Allosteric Regulation
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Cooperativity
Cooperativity
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Feedback Inhibition
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Warm Up Exercise
Explain the difference between competitive and noncompetitive inhibitors
Describe the negative feedback demonstrated by ATP/ADP.
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Cellular Respiration
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Cellular Respiration
Cell respiration is a catabolic pathway. Aerobic Cellular Respiration
Anaerobic Cellular Respiration (aka: Fermentation)
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Redox Reactions
Reduction vs. Oxidation
Why are carbs and fats the best molecules for energy?
Why must glucose be broken down in a series of steps rather than one quick reaction?
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Electron Transport
Dehydrogenase- removes electrons from glucose (or other substrate) transferring them to its coenzyme (NAD+) which is reduced to NADH. (NADH = potential energy)
NAD+ (nicotinamide adenine dinucleotide)- an electron carrier. Cycles between NAD+ and NADH
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NAD to NADH
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Electron Transport
As glucose is broken down (in many small reactions) electrons are shuttled (by NADH) down the Electron Transport Chain (ETC).
Ultimately, oxygen is the final electron acceptor.
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Warm Up Exercise
What is the function of NAD+?
Explain the terms oxidation and reduction.
What is the difference between aerobic and anaerobic respiration?
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Stages of Respiration
Glycolysis (in cytoplasm)- can occur with our without oxygen.
Pyruvate Oxidation (in mitochondria)
Citric Acid Cycle (in mitochondria)
Oxidative Phosphorylation: Electron Transport Chain and Chemiosmosis (in the outer membrane of the mitochondria)
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Stages of Respiration
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ADP to ATP
Oxidative Phosphorylation- inorganic phosphate is added to ADP to produce ATP. Occurs in ETC and chemiosmosis.
Substrate-Level Phosphorylation- an enzyme transfers a phosphate group from a substrate molecule to ADP to form ATP. Occurs in glycolysis and citric acid cycle.
Substrate = an organic molecule generated as an intermediate in glycolysis.
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kjh
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Warm Up Exercise
Without using your notes, name the four major processes of cellular respiration and where in the cell they occur.
Explain the difference between oxidative and substrate-level phosphorylation.
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Oxidative Phosphorylation
Pyruvate enters mitochondria (via active transport) and is converted to Acetyl CoA
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Citric Acid/Kreb’s Cycle
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Citric Acid/Kreb’s Cycle
Acetyl CoA (from oxidative phosphorylation) enters the Citric Acid cycle and combines with oxaloacetate to form citrate, the ionized form of citric acid.
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Warm Up Exercise
Walk through the Kreb’s cycle, stating the reactants and the products and where they came from, or go to
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ETC
Cytochromes- electron carriers in ETC. They are proteins with a Heme group attached. Represent a
series of redox reactions.
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Chemiosmosis
Chemiosmosis- energy coupling mechanism that uses H+ gradient to drive cellular work.
ATP Synthase- enzyme that makes ATP from ADP in the inner membrane of mitochondria.
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Chemiosmosis
Proton Motive Force- the H+ gradient that results from the pumping of H+ ions from the matrix of the mitochondria to the intermembrane space.
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kjh
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Energy Totals
Kh;
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Warm Up-Cell Resp Challenge- Why does NADH have more energy than
FADH2?
Explain the idea of energy coupling that occurs in chemiosmosis.
What element (atom) helps to pull electrons down the ETC?
How many total ATPs are produced per molecule of glucose in aerobic respiration?
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Alternatives to Aerobic Respiration
Anaerobic Respiration- uses ETC with a different final electron receptor (besides oxygen)
Fermentation- no ETC. Glycolysis followed by a fermentation process. Two main types: Alcoholic and Lactic Acid
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Fermentation
Alcoholic Fermentation- pyruvate is converted to acetaldehyde then to ethanol (ethyl alcohol). CO2 byproduct.
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Fermentation
Lactic Acid Fermentation- pyruvate is reduced by NADH to form lactate, with no release of CO2.
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Aerobic vs. Anaerobic
Obligate Anaerobes- organisms that cannot survive in the presence of oxygen. Carry out only
fermentation or anaerobic respiration.
Facultative Anaerobes- organisms that can survive using fermentation or respiration.
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Warm Up Exercise
A glucose-fed yeast cell is moved from an aerobic environment to an anaerobic one. How would its rate of glucose consumption change if ATP were to be generated at the same rate?
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Photosynthesis
Mesophyll- tissue in the interior of the leaf. Where chloroplasts are found.
Stomata- microscopic pores in the leaf that allow CO2 and O2 enter and exit.
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Photosynthesis
The O2 given off in photosynthesis comes from H2O, not CO2.
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Photosynthesis
Light Reactions- solar energy is captured (by chlorophyll in the thylakoids) and converted into chemical energy (ATP and NADPH). Photophosphorylation- creates ATP through
the use of the ETC in the light reactions.
Dark Reactions/Calvin Cycle- chemical energy is used to make organic compounds of food. (ie: glucose) Occurs in stroma. Carbon Fixation- CO2 (from air) is combined
with molecules present in chloroplast to form organic molecules that are reduced to carbohydrates. (w/NADPH)
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Warm Up Exercise
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Light Energy
Photons- packets of light energy.
Pigments- substances that absorb visible light. Chlorophyll a, chlorophyll
b, carotenoids.
Spectrophotometer- instrument that measures the ability of a pigment to absorb various wavelengths of light.
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Absorption Spectrumand Action Spectrum
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Photosystems
Photosystems- a reaction center complex surrounded by light harvesting complexes (pigment molecules + proteins). PS II (P680)
and PS I (P700)
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The Light Reactions
Photon of light is absorbed by pigment molecule in PS II exciting electrons.
Electrons are passed along pigment molecules in the light-harvesting complex, to the reaction center complex, and ultimately to the primary electron acceptor.
Water molecule is split into 2 e-, 2 H+ and O. These e- are transferred back to P680 and H+ is released to lumen of thylakoid. O combines with O from previous water splitting to release O2.
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The Light Reactions
Electrons are passed from primary electron acceptor in PS II down the ETC to PS I. As electrons pass through the ETC, ATP is generated.
Meanwhile, PS I has absorbed light, excited electrons, that are assed on to P700 and to primary electron acceptor, leaving p700 without electrons.
P700 accepts electrons from ETC (that came from PS II).
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The Light Reactions
Excited electrons are passed from primary electron acceptor of PS I through a second ETC.
Electrons move through a protein called ferredoxin and to NADP+ reductase, where they are accepted by NADPH. This stores the energy of the electrons into a form that can be transferred to the Calvin Cycle. (No chemiosmosis, thus no ATP in this ETC)
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The Light Reactions
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Warm Up Exercise
What are the main pigments in chloroplasts?
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Cyclic Electron Flow
Cyclic Electron Flow- electrons take an alternative pathway that uses PS I but not PS II.
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Differences in ETC
Type of phosphorylation
Where electrons come from
Where energy comes from
Direction/location of H+ pumping
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Light Reactions
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Calvin Cycle
CO2 enters the Calvin Cycle from the light reactions and exits as sugar.
The carbohydrate produced in the Calvin Cycle is not actually glucose, but a 3-carbon sugar called G3P. To synthesize 1 molecule of G3P, the process
has to happen 3x fixing 3 molecules of CO2.
Expends 9 ATP and 6 NADH.
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Calvin Cycle
1: Carbon Fixation- CO2 is attached to 5-C molecule (ribulose bisphosphate- RuBP) to form a 6-C molecule. Enzyme: Rubisco.
2: Reduction- molecule from phase 1 is reduced (by NADPH) to become 6 molecules of glyceraldehyde 3-phosphate (G3P). One G3P is released.
3: Regeneration of CO2 Acceptor (RuBP)- other 5 molecules of G3P are rearranged to create 3 more CO2 acceptors (RuBP)