metagenomics: applied to a broad range of environments · metagenomics: applied to a broad range of...
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Metagenomics: applied to a broad range of environments
DNA
extraction
Sequencing
mRNA
extraction
PCR
AmpliconMetatranscriptome Metagenome
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A free to use resource for the archiving,
assembly, analysis, & browsing of
microbiome data
AnalysisData archiving Assembly
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Assembly
Binning
Reference based and de novo
Different way to analyse shotgun metagenomics
Amplicon
& raw read analysis
• Recent advances
• Increased sequencing depth
• Reduced chimeric sequences
• Reduced computational cost
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$ mg-toolkit sequence_search -s my.fasta
Nature 2018 Jun;558(7711):595-599