milestone ms6 work package 2, milestone 6: engagement …...a virtual research environment to...
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MilestoneMS6WorkPackage2,Milestone6:EngagementplanOutlineplanandscheduleforengagementapprovedandpublishedonthewebsite.WorkPackage2,Task2.3DisseminationandoutreachEngagingallsectorsfromthepublictoresearchspecialistsandcommunicatingthepowerofavirtualresearchenvironmenttoprovideaseamlessresourceforthemanagement,analysis,interpretation,archivingandprotectionofdataacquiredfromstructuralbiologymethods(Objective2.3).
EngagementPlanInagreementwithWP2oftheTechnicalAnnex,plansofactionsfortheengagementwithdifferentcommunitieshavebeenoutlined,asdetailedinthesectionsbelow.Thisallowedtodefinethe“Engagementplan”reportedinAppendix1.ThisplanispublishedintheWest-Lifewebsite,andwillbecontinuouslyupdated.EngagementwiththestructuralbiologycommunityWest-LifeVREprovidesaplatformofferingvarietyofservicesandinformationontheservices.Havinganoverviewofexperimentsperformedthroughanoperationalpipelineaccessingdifferentfacilitiesinsequencewouldbeextremelybeneficialforthealreadywell-informedcommunity.ThiscanbefurtherpublicisedbyWest-Lifepresenceatstructuralbiologyconferences,workshopsandmeetings.Flyers(Appendix3),presentationsandpostersatexternalmeetingshavealreadybeenmadeandwillbecontinued.TheprojectwebsitehasnewsitemsthatisupdatedwiththelateststructuralbiologyhappeningsandislinkedtotheStructuralBiologyResearchInfrastructure(Instruct).Theprojectwebsitealsohasanoverviewofthelatesteventsinthecommunitythuspromotingcollaborationandfurtherengagement.Embracingthesocialnetworks,West-Lifehasanactivetwitteraccountwhichisinconstantinteractionwiththedifferentpartnersinthecommunity.West-LifewillalsohaveaLinkedInpage,thushelpingthecommunityinfacilitatingmovementoftalentsandjobsinthenetwork.Actionpoints
• ContinuedpresenceofWest-Lifeatconferencesanddistributionofflyers,brochuresetc.
o Participantsoftheproject,attendingconferences/workshops,arestronglyencouragedtouseWest-Lifelogos,namecheckprojectpartnersanddistributebusinesscards.
• LinkedInpagewithallthedetails• AdditionofWest-LifeintheInstructnetworks,thusprovidingaforumwherepeople
fromdifferentcommunitiescaninteract• Continuedupdateofprojectwebsitewithnewsandevents
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• LeveragemailinglistswithineachpartnertosendcommunicationsandachievementsoftheVRE.Tableofmailinglistsandthemembersineachforumbelow.
Partner Mailinglistlink Numberof
registeredmembers
Contactperson
Instruct n/a(Contentmanagementsystem,usecontact)
4443 [email protected]
STFC http://www.jiscmail.ac.uk/lists/ccp4bb.html
6226 [email protected]
NKI-AVL PDB_REDOregisteredusers(onlyrestrictedmailinguntilamailinglistisadded)
>1000 [email protected]
EMBL newsletter >3000 MU CSIC 3DEMlist
(http://3dem.ucsd.edu/mailinglist.shtm)Scipionlist(https://lists.sourceforge.net/lists/listinfo/scipion-users)
CIRMMP ItalianChemicalSociety;Bio-NMRusersmailinglist
>2000 [email protected]
UU HADDOCKwebportalregisteredusers(onlyrestrictedmailingfornowuntilweimplementamechanismforuserstooptoutofthemailinglist)
>7700 [email protected]
WeNMR Newsitemscanbepostedonthewenmr.euwebsite
>2600 [email protected]
Luna INFN enmr.euVOusersmailinglist:enmr-
[email protected]>500 [email protected]
EngagementwithnewusercommunitiesWest-Life,throughitsparticipants,aredeeplyinvolvedinmultiplecollaborationswithotherBio-MedicalSciencesResearchInfrastructures(BMSRIs)throughdifferentprojectslikeCORBEL,BioExcel,RDAetc.Thishelpsinestablishingcontactswithnewusercommunities.
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Project Collaboratingpartners NatureofcollaborationResearchDataAlliance STFC,EUDAT OrganisationalmembersBioExcel UU ConsortiumpartnerAARC2 STFC,Instruct PartnersCORBEL EMBL,Instruct,CIRMMP,
CSICPartners
West-LifewillcontinuetointeractwithdifferentusercommunitiesthroughTwitterandothersocialnetworks.West-Lifewillcontinuetoberepresentedbyitspartnersinthemeetings,conferencesandworkshopswhichinvolvenewusercommunities,fromverydifferentscientificbackgrounds.EventswhereWest-Lifewasrepresented
Event Date EngagementComputationalBiotechnologyattheNanoscale,Faridabad,India
February15-202016 Workshop
14thInternationalSchoolofBiologicalMagneticResonance,Erice,Italy
7-17May2016 Talk
CECAMworkshop2016“StructuralandFunctionalAnnotationofBioinorganicSystems:PerspectivesandChallengesfromTheoryandExperiments",Pisa,Italy
23-25May2016 Talk
FEBS–IUBMBWorkshoponBiointeractomics,Seville,Spain
17-20May Talk
GordonResearchConferencesFrontiersofScience,lesDiablerets,Switzerland
26June-1July2016 Talk
EMBOGlobalExchangeLectureCourse,Suwon,Korea
19-26June2016 Talk
Euromar2016,Aarthus,Denmark
3-7July2016 Talk
27thInternationalConferenceonMagneticResonanceinBiologicalSystems,Kyoto,Japan
21-26August2016 Talk
MilestoneMS658thRockyMountainConferenceonMagneticResonance(RMCMR),Colorado,USA
17-21July2016 Talk
XLVNationalCongressonMagneticResonance,Modena,Italy
5-7September2016 Talk
EMBOMeeting,Mannheim,Germany
September10-132016 Stand
DigitalInfrastructuresforEU,Krakow,Poland
September28–302016
Talk
pNMRandGIDRMsymposium"EuropemeetsItalywithparamagneticNMR",Venice,Italy
28September2016 Talk
JointInternationalConferenceoftheHeCrAandtheHSCCB,Athens,Greece
October7-92016 Talk
X-RayMethodsinStructuralBiology,ColdSpringHarbour,NY,USA
October10-152016 Workshop
iNEXTAllHandsMeeting,Madrid,Spain
October19-202016 Dedicationsession
Actionpoints
• Continuedpresenceatbroaderscopedmeetings,conferencesandotherevents• TechnicaldisseminationwithinfrastructureslikeEUDAT,EGIEngageetc.• Publishinginscientificjournalsofvariedreach• BuildbridgeswithotherVREprojectsandshareknowledge• RepresentationofWest-LifeinResearchGate
EngagementwithindustrialusersThefocusofengagementwiththeindustryshallbeontwolevels–asusersofVREservicesandasadvisersintailoringthedevelopments.Overdifferentyears,manyWest-LifepartnershaveforgedgoodrelationshipswithindustryandtheywillbeutilisedovertheperiodoftheprojectforthebenefitofWest-Life.Industrialconnections(throughcourses,workshopsetc.)
Contact TypeFirstI2PC-FEI“handson”courseonimageprocessingappliedtothestructuralcharacterizationofbiological
Course(October17-20,2016)
MilestoneMS6macromolecules,Madrid,Spain(Partner:CSIC)ProposedEMCourseatDiamond,Oxford,UnitedKingdom
Course
West-Lifewillproduceanindustrytailoredwebsite.TheindustryspecificpagesofthewebsitewillhavedirectinformationofthetoolsandservicesofferedthroughWest-LifeVRE,informationontheleadingscientistsinvolvedintheprojectandclearinformationonhowtoaccesstheVRE.Thisisimportantbecausethereisdocumentedevidenceofcommunicationgapbetweenindustrialusersandserviceprovidersfromacademicbackgrounds.West-Lifewillalsotailorthecurrentflyerspecificallytotheindustrialcommunity.Theforesightmeetingplannedtoengagenewusercommunitieswillincludeusersfromindustrialsector.Actionpoints
• Continuedpresenceatconferencesinvolvingindustry• Tailoredwebsiteforindustrialcommunity• Industrytargetedflyer• Foresightmeetingwithdifferentpartnersandrepresentativesfromindustry
Engagementwithpolicymakersandnon-scientificcommunitiesEngagingwithpublicbodiesandpolicymakersareofbothcriticalandstrategicimportance.Aswellasprovidingbriefingnotesforpolicymakers,West-LifewillalsopublishinEuropeanpublicdisseminationforumslikeCORDIS.ProductionofbrochureswhichexplaintheimpactofVREinstructuralbiologyandstructuralbiologyingeneralinthedailylivesofpublicwouldbekey.SocialmediaoutletslikeTwitter,LinkedInetc.willbeutilisedinexplainingtheroleoftheVREinenablingsciencetacklingimportantscientificproblems.Actionpoints
• PublicationinCORDIS• PublicationoftheVREinMERIL• Brochureforpublic
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Appendix
1. EngagementPlan
Item Medium Target
West-Lifenetworksinstructuralbiology.euwebpages
StructuralBiologyCommunityandNewcommunities
LinkedInGroup,perhapslinkedtoWeNMR
Web Newcommunitiesandpublic
Technicaldisseminationwithinfrastructures
ConferenceslikeDI4R Newcommunities
Publishinginjournals Web/Print Newcommunitiesandpublic
Webpagesspecificallyaddressingindustryusers
Web Industry
FlyertargetedtoIndustryusers
Flyer Industry
PublicationinCORDIS Web Policymakersandnewcommunities
PublicationofVREinMERIL Web Industryandnewcommunities
FutureeventswhereWest-Lifewillberepresented
Event Location Date Target
PSDI2016 Malmö,Sweden
November2016
Industry
DLS-CCP4DataCollectionandStructureSolutionWorkshop
Oxford,UnitedKingdom
December 13-20 2016
StructuralBiologyCommunity
CCP4StudyWeekend2017
Nottingham,UnitedKingdom
January92017
IndustryandStructuralBiologyCommunity
CCP4CrystallographySchoolandWorkshopatSPring-8
Japan January 2017
IndustryandStructuralBiologyCommunity
NECENI2PCCryo-EMschool
Leiden,Netherlands
Jan – Mar 2017
StructuralBiologyCommunity
MilestoneMS610th«NMRatoolforBiology»meeting
Paris,France January30–February12017
StructuralBiologyCommunity
42ndLorneConferenceonProteinStructureandFunction
MantraLorne,Australia
February5-9,2017
StructuralBiologyCommunity
NGP-netWinterSchoolonExperimentalMethodsforProteinDisorder&Aggregation
Marseille,France
Februay13-172017
StructuralBiologyCommunity
InternationalSymposiumonGrids&Clouds2017
Taipei,Taiwan/ChineseTaipei
March5-102017
NewCommunities
MagneticMomentsin.CentralEurope(MMCE)
Budapest,Hungary
March8-122017
NewCommunities
ExperimentalNuclearMagneticResonanceConference
California,USA March26-31,2017
IndustryandNewCommunities
FEBSCombinedPracticalandLectureCourseChemistryofMetalsinBiologicalSystems
Belgium May52017 NewCommunities
InstructBiennialStructuralBiologyMeeting2017
Brno,CzechRepublic
May21-242017
StructuralBiologyCommunity
iNEXTAllHandsMeet Brno,CzechRepublic
May212017
StructuralBiologyCommunity
GRCComputationalAspectsofBiomolecularNMR
SundayRiverME,USA
June11-16,2017
Industryandnewcommunities
CCP4/APSSchoolinMacromolecularCrystallography
Argonne,USA June 2017 IndsutryandStructuralBiologyCommunity
BiophysicalSocietyThematicMeeting
Berlin,Germany
August 25-29 2017
StructuralBiologyCommunity
MilestoneMS6PDBeAPI-searchandentryAPIWorkshop
StructuralBiologyCommunity
DrugDiscovery2017 2017 IndustryandNewcommunities
iNEXTtrainingcourseBridgingsolutionmethods:fromNMRtoX-rayscatteringandbiophysics
Patras,Greece 2017 StructuralBiologyCommunityandNewCommunities
2. Flyer
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West-Life: your virtual research environment for structural biology
View all your data in a single, coherent place
West-Life is your portal to processing data in the cloud
Connect your processing together with a single portal
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Visit: west-life.eu Tweet: @WestLifeSB
Science and Technology Facilities Council, United Kindgom
Netherlands Cancer Institute - Antoni van Leeuwenhoek Ziekenhuis (NKI AVL), Netherlands
European Molecular Biology Laboratory, Germany
Masarykova univerzita, Czech Republic
Agencia Estatal Consejo Superior de Investigaciones Cientificas, Spain
Consorzio Interuniversitario Risonanze Magnetiche di Metallo Proteine, Italy
Instruct Academic Services, United Kingdom
Universiteit Utrecht, Netherlands
LUNA, France
Istituto Nazionale di Fisica Nucleare, Italy
This project receives funding from the European Union’s Horizon 2020 research and innovation programme under grant
agreement No 675858.
Participants
West-Life is a H2020 Virtual Research Environment project (EINFRA No 675858) with 10 partners from 7 EU countries.
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automated pipelines to process structural biology data
automated & integrated data management
cryo-EM
X-Ray
solid-state NMR
solution NMR
training on advanced computational solutions
in structural biology
cloud & grid resources
EPR SAXS
MS
FRET
Life Sciences in the Cloud
West-Life pilots an e-infrastructure for providing data services and tools for structural biology
West-Life is a Virtual Research Environment (VRE) through which users from the life science research community can access services and tools that will advance their research in the area of structural biology. The services made available will support experimental techniques such as X-ray, cryo-EM, NMR, SAXS and some biophysical techniques and provide the means to access more generic data services developed by EUDAT and the EGI. West-Life therefore makes integrated approaches to science more accessible and provides the IT infrastructure in support. West-Life builds on the strong foundations set up by WeNMR to serve the strong and growing community of European structural biologists under the umbrella of Instruct.
West-Life is developing a pilot infrastructure for storing and processing data that are obtained using combined techniques to achieve outcomes of higher impact.
West-Life allows structural biologists to fully leverage the available European computational infrastructures and services
West-Life aims to integrate existing data management services and develop new ones. Users will benefit from having an overview of experiments performed through an operational pipeline accessing different facilities in sequence, with appropriate data stores and data processing services. The history of a project will be captured through metadata that is automatically saved through each of the pipeline steps to track your processing and record the provenance of your results.
West-Life will improve structural biology research outcomes by integrating data from complementary techniques into an enriched dataset that may provide new insights and set new paradigms in important areas of life science research.
Integrate computational tools
Integrate data management facilities
Enable provision of new data services