nasir rajpoot - university of warwicknasir/projects_msc/nrajpoot_msc2… · nasir rajpoot...
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Nasir RajpootComputational Biology & Bioimaging (COMBI)
A new branch of computational biology concerned with the study of concepts and techniques for acquisition, visualization, processing, analysis, and dissemination of biological images.
Exciting developments in imaging hardware and image informatics algorithms make it possible to study biology in a new light
Advantages: Handling too much-data (Information overload) Extracting useful objective information Spatiotemporal localisation High throughput Reduced subjectivity in analysis, resulting in: Reproducible research (Acceptability of your research
depends on this)
Some Recent Projects
Vinay Kalasannavar, MSc Dissertation (Distinction), September 2010
in collaboartion with Department of Biological Sciences, University of Warwick
Irfan Butt, MSc Dissertation (Best Dissertation Prize), September 2009Accepted for publication in Pattern Recognition, 2011
Noisy Denoised Thresholded
PC Suraj Bangalore-Nagaraj, MRes Project, 2009-10
in collaboartion with
PC Suraj Bangalore-Nagaraj, MRes Project, 2009-10
Myosin proteins aremotor proteins (GREEN spots) which travel onActin Filaments (roadnetworks shown inRED) within the cells.
in collaboartion with
Arif, Rajpoot et al., Journal of Biotechology, 2011
in collaboartion with
Project Ideas for 2010-11
Task: Track the sliding long thin microtubules (railway lines within the cell) in a video sequence contaminated with acquisition noise.
in collaboartion with
in collaboartion with
Task: Track the expanding long thin microtubules (railway lines within the cell) in a video sequence contaminated with acquisition noise.
Schubert et al.,Nature Biotech., 2006
Multi-channel fluorescence microscopy,
a fairly recent development
The Toponome Imaging System (TIS)at Warwick HRI
in collaboartion with
Images from a Colon cancer TIS stack by Mike Khan’s group at Warwick
Find multi-protein signatures of cancer cells Identify molecular characteristics of stem
cells that can differentiate to cancer cells
Some Ground Rules
An exciting CS dissertation (elements of Image Processing, Computer Vision, and Pattern Recognition) with a Biology application
Lots of fun toying with cutting edge technologies in microscopy imaging
Space in the lab
Working with some of the top scientists in their field
Potential candidacy for PhD at Warwick or elsewhere
Contribution to Science
Good background in Mathematics Good know-how of image processing Fluency in MATLAB and/or C++
Willingness to put in that much extra effort A serious attitude towards research and
science
Email me your CV, with specific mention of:
Relevant courses taken at your UG/PG levels
Relevant programming experience
Say a few words about your motivation for working in this area
Deadline: 5pm, Tuesday 23 Nov, 2010.