neuronvisio intro

IntroductionSoftware

Neuronvisio Tutorial

Michele [email protected]

EMBL-EBI and University of Cambridge

06 March 2010

Michele Mattioni Neuronvisio Tutorial


Outline

1 IntroductionBackground

2 SoftwareHow to use itWhere to get it



Background

Outline





Background

Why I built it

Eric S. Raymond - The Cathedral and the BazaarEvery good work of software starts by scratching a developer’spersonal itch.



How to use itWhere to get it

Outline






At glance




Visualize a model

It is possible to zoom, rotate and move the model.




Plot the results




Explore the timecourse of a variable




How to integrate in your code

Figure: Python Model integration

Figure: Hoc Model integration




Controls window




Saving simulations results

Complex simulations can take agesStore the results to analyze them later onManager class to create the data structure and to remap itto neuronvisio.




Saving a simulation from the GUI




Integrating that with you cluster’ simulations




Website and Docs

http://mattions.github.com/neuronvisio/





Source code

Latest availableVersion 0.4.3

Download http://pypi.python.org/pypi/neuronvisio/Website http://mattions.github.com/neuronvisio/The code is under GPL3.On the website there are the instruction to install thedependencies

HackingThe current code in development is available from githubgit clone git://github.com/mattions/neuronvisio.git


http://pypi.python.org/pypi/neuronvisio/




That’s all folks

The indecent proposal...Do you want to see a live demo? :)


neuronvisio intro

Education

itto neuronvisio

good work of software

download http

codelatest available

github git clone git

current code

university of cambridge06

data structure