Ontology Engineering & Maintenance

Semantic Web - Spring 2006

Computer Engineering Department

Sharif University of Technology

Outline Ontology Engineering Ontology evaluation

Introduction Why do we use ontology?

To describe the semantics of the data (which we name as Meta-Data)

Why do we describe the semantics? In order to provide a uniform way to make different

parties to understand each other

Which data? Any data (on the web, or in the existing legacy

databases)

Introduction Formal definition on Ontology:

Ontologies are knowledge bodies that provide a formal representation of a shared conceptualization of a particular domain.

Ontologies are widely used in the Semantic Web. Recently ontologies have become

increasingly common on WWW where they provide semantics of annotations in web pages

What Is “Ontology Engineering”?Ontology Engineering: Defining terms in the

domain and relations among them Defining concepts in the domain (classes) Arranging the concepts in a hierarchy

(subclass-superclass hierarchy) Defining which attributes and properties (slots)

classes can have and constraints on their values

Defining individuals and filling in slot values

Ontology-Development Processhere:

determinescope

considerreuse

enumerateterms

defineclasses

defineproperties

defineconstraints

createinstances

In reality - an iterative process:

determinescope

considerreuse

enumerateterms

defineclasses

considerreuse

enumerateterms

defineclasses

defineproperties

createinstances

defineclasses

defineproperties

defineconstraints

createinstances

defineclasses

considerreuse

defineproperties

defineconstraints

createinstances

Determine Domain and Scope

What is the domain that the ontology will cover?

For what we are going to use the ontology? For what types of questions the information in

the ontology should provide answers?

determinescope

considerreuse

enumerateterms

defineclasses

defineproperties

defineconstraints

createinstances

Consider Reuse

Why reuse other ontologies? to save the effort to interact with the tools that use other

ontologies to use ontologies that have been validated

through use in applications

determinescope

considerreuse

enumerateterms

defineclasses

defineproperties

defineconstraints

createinstances

What to Reuse? Ontology libraries

DAML ontology library (www.daml.org/ontologies) Ontolingua ontology library

(www.ksl.stanford.edu/software/ontolingua/) Protégé ontology library

(protege.stanford.edu/plugins.html)

Upper ontologies IEEE Standard Upper Ontology (suo.ieee.org) Cyc (www.cyc.com)

What to Reuse? (II) General ontologies

DMOZ (www.dmoz.org)

WordNet (www.cogsci.princeton.edu/~wn/) Domain-specific ontologies

UMLS Semantic Net GO (Gene Ontology) (www.geneontology.org)

Enumerate Important Terms

What are the terms we need to talk about? What are the properties of these terms? What do we want to say about the terms?

considerreuse

determinescope

enumerateterms

defineclasses

defineproperties

defineconstraints

createinstances

Define Classes and the Class Hierarchy

A class is a concept in the domain a class of wines a class of wineries a class of red wines

A class is a collection of elements with similar properties

Instances of classes a glass of California wine you’ll have for lunch

considerreuse

determinescope

defineclasses

defineproperties

defineconstraints

createinstances

enumerateterms

Classes usually constitute a taxonomic hierarchy (a subclass-superclass hierarchy)

A class hierarchy is usually an IS-A hierarchy:

an instance of a subclass is an instance of a superclass

If you think of a class as a set of elements, a subclass is a subset

e.g., Apple is a subclass of FruitEvery apple is a fruit

Class Inheritance

Levels in the Hierarchy

Middlelevel

Toplevel

Bottomlevel

Modes of Development top-down – define the most general

concepts first and then specialize them bottom-up – define the most specific

concepts and then organize them in more general classes

combination – define the more salient concepts first and then generalize and specialize them

Documentation Classes (and Properties) usually have

documentation Describing the class in natural language Listing domain assumptions relevant to the

class definition Listing synonyms

Documenting classes and slots is as important as documenting computer code!

Define Properties (Slots) of Classes

Properties in a class definition describe attributes of instances of the class and relations to other instancesEach wine will have color, sugar content,

producer, etc.

considerreuse

determinescope

defineconstraints

createinstances

enumerateterms

defineclasses

defineproperties

Properties (Slots) Types of properties

“intrinsic” properties: flavor and color of wine “extrinsic” properties: name and price of wine parts: ingredients in a dish relations to other objects: producer of wine (winery)

Simple and complex properties simple properties (attributes): contain primitive values

(strings, numbers) complex properties: contain (or point to) other objects

(e.g., a winery instance)

Property Constraints (facets)

Property constraints (facets) describe or limit the set of possible values for a property

The name of a wine is a stringThe wine producer is an instance of WineryA winery has exactly one location

considerreuse

determinescope

createinstances

enumerateterms

defineclasses

defineconstraints

defineproperties

An Example: Domain and Range

When defining a domain or range for a slot, find the most general class or classes

Consider the flavor slot Domain: Red wine, White wine, Rosé wine Domain: Wine

Consider the produces slot for a Winery: Range: Red wine, White wine, Rosé wine Range: Wine

slotclass allowed values

DOMAIN RANGE

Create Instances

Create an instance of a class The class becomes a direct type of the instance Any superclass of the direct type is a type of the

instance Assign slot values for the instance frame

Slot values should conform to the facet constraints Knowledge-acquisition tools often check that

considerreuse

determinescope

createinstances

enumerateterms

defineclasses

defineproperties

defineconstraints

Defining Classes and a Class Hierarchy The things to remember:

There is no single correct class hierarchy But there are some guidelines

The question to ask:“Is each instance of the subclass an instance of

its superclass?”

Transitivity of the Class Hierarchy

The is-a relationship is transitive:B is a subclass of AC is a subclass of BC is a subclass of A

A direct superclass of a class is its “closest” superclass

Multiple Inheritance A class can have more than

one superclass A subclass inherits slots and

facet restrictions from all the parents

Different systems resolve conflicts differently

Disjoint Classes

Classes are disjoint if they cannot have common instances Disjoint classes cannot have any common subclasses either

Red wine, White wine,Rosé wine are disjoint

Dessert wine and Redwine are not disjoint

Wine

Redwine

Roséwine

Whitewine

Dessertwine

Avoiding Class Cycles Danger of multiple

inheritance: cycles in the class hierarchy

Classes A, B, and C have equivalent sets of instances By many definitions, A, B, and C

are thus equivalent

The Perfect Family Size If a class has only one child,

there may be a modeling problem

If the only Red Burgundy we have is Côtes d’Or, why introduce the sub-hierarchy?

Compare to bullets in a bulleted list

The Perfect Family Size (II) If a class has more

than a dozen children, additional subcategories may be necessary

However, if no natural classification exists, the long list may be more natural

Single and Plural Class Names A “wine” is not a kind-of

“wines” A wine is an instance of the

class Wines Class names should be either

all singular all plural

Class

Instance

instance-of

Classes and Their Names Classes represent concepts in the domain, not

their names The class name can change, but it will still refer

to the same concept Synonym names for the same concept are not

different classes Many systems allow listing synonyms as part of the class

definition

Content: Top-Level Ontologies What does “top-level” mean?

Objects: tangible, intangible Processes, events, actors, roles Agents, organizations Spaces, boundaries, location Time

IEEE Standard Upper Ontology effort Goal: Design a single upper-level ontology Process: Merge upper-level of existing ontologies

CYC: Top-Level Categories

WORDNET: Representation of Subclass Relation among Synsets

Sowa’s Ontology

Ontology Evaluation Key factor which makes a particular discipline or

approach scientific is the ability to evaluate and compare the ideas within the area.

In most practical cases ontologies are a non-uniquely expressible.

One can build many different ontologies which conceptualizing the same body of knowledge.

We should be able to say which of these ontologies serves better some predefined criterion.

Categories of Ontology Evaluation Those based on comparing the ontology to a

"golden standard“ (a ontology). Those based on using the ontology in an

application and evaluating the results of it. Those involving comparisons with a source of

data (e.g. a collection of documents) about the domain that is to be covered by the ontology.

Those where evaluation is done by humans who try to assess how well the ontology meets a set of predefined criteria, standards, requirements, etc.

Different Levels of Evaluation Lexical, vocabulary, or Data Layer Hierarchy or Taxonomy Other Semantic relations Context or application level Syntactic Level Structure, Architecture, Design Multiple-criteria approaches

A: Lexical, Vocabulary, or Data Layer The focus is on which concepts, instances, facts, etc. have

been include in the ontology, and the vocabulary used to represent or identify these concepts.

Evaluation on this level tends to involve comparisons with various sources of data concerning the problem, as well as techniques such as string similarity measures (e.g. edit distance).

MAEDCHE AND STAAB (2002). Concepts are compared to a “Golden Standard” set of strings that are considered a good representation of the concepts.

Golden standard Another ontology Taken statistically from a corpus of documents Prepared by domain experts.

B: Hierarchy or Taxonomy An ontology typically includes a hierarchical “is-a

or subsumption” relation between concepts. BREWSTER et al. (2004) used a data-driven

approach to evaluate the degree of structural fit between an ontology and a corpus of documents. Cluster the documents and make topic representing

documents Each concept c of the ontology is represented by a set of

terms including its name in the ontology and the hypernyms of this name, taken from Wordnet.

Measure how well a concept fits a topic results from the clustering step.

Indicate that the structure of the ontology is reasonably well aligned with the hidden structure of topics in the domain-specific corpus of documents.

C: Context Level An ontology may be part of a larger collection of ontologies,

and may reference or be referenced by various definitions in these other ontologies. In this case it may be important to take this context into account when evaluating it.

Swoogle search engine uses cross-references between semantic-web documents to define a graph and compute a score for each ontology in a manner analogous to PageRank used by the Google web search engine. The resulting “ontology rank” is used by Swoogle to rank its query results.

An important difference in comparison to PageRank is that not all “links” or references between ontologies are treated the same. If one ontology defines a subclass of a class from another ontology, this reference might be considered more important than if one ontology only uses a class from another as the domain or range of some relation.

D: Application Level It may be more practical to evaluate an ontology

within the context of particular application, and to see how the results of the application are affected by the use of ontology in question.

The outputs of the application, or its performance on the given task, might be better or worse depending partly on the ontology used in it.

One might argue that a good ontology is one which helps the application in question produce good results on the given task.

E: Syntactic Level For manually constructed Ontologies. The ontology is usually described in a

particular formal language and must match the syntactic requirements of that language (use of the correct keywords, etc.).

This is probably the one that lends itself the most easily to automated processing.

F: Structure, Architecture, Design This is primarily of interest in manually

constructed ontologies. Assuming that some kind of design

principles or criteria have been agreed upon prior to constructing the ontology, evaluation on this level means checking to what extent the resulting ontology matches those criteria.

Must usually be done largely or even entirely manually by people such as ontological engineers and domain experts.

G: Multiple-Criteria Approaches Selecting a good ontology from a given set of

ontologies. Techniques familiar from the area of decision

support systems can be used to help us evaluate the ontologies and choose one of them.

Are based on defining several decision criteria or attributes; for each criterion, the ontology is evaluated and given a

numerical score. A weight is assigned to each criterion. An overall score for the ontology is then computed as a

weighted sum of its per-criterion scores.

Example Select an Ontology - Type G: Ontology Auditor Metrics Suite

Metric Attributes DescriptionSyntactic Quality

Lawfulness Correctness of syntax used

Richness Breadth of syntax used

Semantic Quality

Interpretability Meaningfulness of terms

Consistency Consistency of meaning of terms

Clarity Average number of word senses

Pragmatic Quality

Comprehensibility Amount of information

Accuracy Accuracy of information

Relevance Relevance of information for a task

Social QualityAuthority Extent to which other ontologies rely on it

History Number of times ontology has been used

Example Cont.: Overall Quality Metric Overall quality (Q) is a weighted function of its

constituents: Q = c1 × S + c2 × E + c3 × P + c4 × O where S = syntactic quality E = semantic quality P = pragmatic quality O = social quality, and c1+c2+c3+c4 = 1

The weights sum to unity, and currently, are set by the user, the application, or else assumed equal

Example Cont.: Syntactic Quality (S) Measures the quality of the ontology

according to the way it is written. Lawfulness

refers to the degree to which an ontology language’s rules have been complied.

Richness refers to the proportion of features in the ontology

language that have been used in an ontology

Syntactic Quality (S) S = b1SL + b2SR

Lawfulness (SL)Let X be total syntactical rules. Let Xb be total breached rules. Let NS

be the number of statements in the ontology. Then SL = Xb / NS.

Richness (SR)Let Y be the total syntactical features available in ontology language. Let Z be the total syntactical features used in this ontology. Then SR = Z/Y.

Example Cont.: Semantic Quality (E) Evaluates the meaning of terms in the

ontology library. Interpretability

refers to the meaning of terms in the ontology Consistency

whether terms have consistent meaning Clarity

whether the context of terms is clear

Semantic Quality (E) E = b1EI + b2EC + b3EA

Interpretability (EI)Let C be the total number of terms used to define classes and properties in ontology. Let W be the number of terms that have a sense listed in WordNet. Then EI = W/C.

Consistency (EC)Let I = 0. Let C be the number of classes and properties in ontology. Ci, if meaning in ontology is inconsistent, I+1. I = number of terms with inconsistent meaning. Ec = I/C.

Clarity (EA)Let Ci = name of class or property in ontology. Ci, count Ai , (the

number of word senses for that term in WordNet). Then EA = A/C.

Example Cont.: Pragmatic Quality (P) Refers to ontology’s usefulness for users or their

agents, irrespective of syntax or semantics. Accuracy

whether the claims an ontology makes are ‘true.’ Comprehensiveness

measure of the size of the ontology. Relevance

whether ontology satisfies the agent’s specific requirements.

Relevance (PR)

Pragmatic Quality (P) P = b1PO + b2PU + b3PR

Comprehensiveness (PO) Let C be the total number of classes and properties in ontology. Let V be the average value for C across entire library. Then PO = C/V.

Accuracy (PU)Let NS be the number of statements in ontology. Let F be the number

of false statements. PU = F/NS. Requires evaluation by domain expert

and/or truth maintenance system. Let NS be the number of statements in the ontology. Let S be the type

of syntax relevant to agent. Let R be the number of statements within NS that use S. PR = R / NS.

Example Cont.: Social Quality (O) Reflects that agents and ontologies exist

in communities. Authority

number of other ontologies that link to it History

number of times the ontology is accessed

Social Quality (O) O = b1OT + b2OH

Authority (OT) Let an ontology in the library be OA. Let the set of other ontologies

in the library be L. Let the total number of links from ontologies in L to OA be K. Let the average value for K across ontology library

be V. Then OT = K/V.

History (OH) Let the total number of accesses to an ontology be A. Let the average value for A across ontology library be H. Then OH = A/H.

The End