open notebook science: research in real-time

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Presented on 2/15/13 for Student Research Day at UNM. Scientific information is published in peer reviewed journals as a complete account. Unfortunately there is nothing complete about the process. Frequently intermediate and supplementary experimental data is excluded, methods are not nearly detailed enough, and results are manipulated for appearance. Open notebook science aims to be a complete account of the scientific process: from ideas and planning, to experimental setup and protocol design, all the way through data interpretation and commentary. Here I talk about tools to create and support an open notebook, effective use of the medium, and how social interaction creates a community using examples from my own open notebook for research.

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Page 1: Open Notebook Science: Research in Real-Time

Open Notebook Science:Research in Real-Time

by anthony salvagnoresearch.iheartanthony.com

Page 2: Open Notebook Science: Research in Real-Time

how is science traditionally

carried out?

Page 3: Open Notebook Science: Research in Real-Time

closed & isolated

and the outcome...

ideas results

Page 4: Open Notebook Science: Research in Real-Time

...is peer review publication

writingformattingacceptance

inaccessiblelimited

Page 5: Open Notebook Science: Research in Real-Time

peer review is designed to weed outmisinformation...

...but now there are so many journalsscientists will eventually get published.

Page 6: Open Notebook Science: Research in Real-Time

What is the alternative?

Page 7: Open Notebook Science: Research in Real-Time

open science

open access

data methods

reinventingdiscovery

outreach

publicaccess

citizenscience

Page 8: Open Notebook Science: Research in Real-Time

open notebook science

-via Wikipedia

...the practice of making the entire primary record of a research project publicly available online as it is recorded.

Page 9: Open Notebook Science: Research in Real-Time

what are the

Key aspects of

Open notebook science?

Page 10: Open Notebook Science: Research in Real-Time

communication

provenance

repeatability

transparency

Page 11: Open Notebook Science: Research in Real-Time

Why do open notebook

science?

Page 12: Open Notebook Science: Research in Real-Time

real-timepeer review

andcollaboration

scientific outreach

be a better scientist

lots ofpublications

ease of writing

open notebookscience

measurableimpact

Page 13: Open Notebook Science: Research in Real-Time

are there drawbacks?

Page 14: Open Notebook Science: Research in Real-Time

can you still publish in a journal?-YES!

-NO! start small or dive in!do you have to be fully open?

-sure, but it is actually easier toprotect open data

can you be scooped?

Page 15: Open Notebook Science: Research in Real-Time

And now a Demonstration...

busting science openiheartanthony, do you?