panel members v2_datajournals_repositories_repofringe3aug2015
TRANSCRIPT
Building data networks: exploring trust and interoperability between authors, repositories and journals
Chair: Varsha Khodiyar, nature.com
Panel members: Neil Chue Hong, Journal of Open Research SoftwareRachael Kotarski, DataCiteReza Salek, European Bioinformatics InstitutePeter McQuilton, BioSharing
Software Sustainability Institute
www.software.ac.uk
Neil Chue HongDirector, Software Sustainability InstituteEditor-in-Chief, Journal of Open Research Software
Repository Fringe 2015, Edinburgh, 3-4 August 2015Neil Chue Hong (@npch), Software Sustainability InstituteORCID: 0000-0002-8876-7606 | [email protected]
Unless otherwise indicatedthese slides licensed under
Supported by Project funding from
Software Sustainability Institute
www.software.ac.uk
A Journal for Software Papershttp://openresearchsoftware.metajnl.com
Software Sustainability Institute
www.software.ac.uk
JORS software metapaper
Software Sustainability Institute
www.software.ac.uk
ReferencesReuse
ScreenshotsIntroduction
Implementation + Usage
Anatomy of a
software meta-paper
Metadata
Metadata
QualityControl
www.bl.uk 7
DataCite UK
• 52 Data Centres / Universities / other organisations using DataCite in the UK
• Assigning DOIs to data, theses and software among other things
www.bl.uk 8
British Library
Leverage the Library’s collections and expertise to drive innovation in large-scale data analytics, for the wider benefit of UK research
• Providing our digital collections as ‘data’– http://labs.bl.uk/– http://www.bl.uk/bibliographic/datafree.html
• Alan Turing Institute will be physically hosted in the British Library building
MetaboLights: Metabolomics data sharing and Data standards
Reza SalekCheminformatics and Metabolism
EBI August 2015
Databases and servicesGenomesEnsembl
Ensembl Genomes EGA
GenomesEnsembl
Ensembl Genomes EGA
Nucleotide sequenceENA
Nucleotide sequenceENA
Functional genomics
ArrayExpressExpression Atlas
Functional genomics
ArrayExpressExpression Atlas
Protein SequencesUniProt
Protein SequencesUniProt
Protein families, motifs and domains
InterPro
Protein families, motifs and domains
InterPro
Macromolecular PDBe
Macromolecular PDBe
Protein activityIntAct , PRIDE
Protein activityIntAct , PRIDE
Cheminformatics &Metabolism
MetaboLights, ChEBI
Cheminformatics &Metabolism
MetaboLights, ChEBI
PathwaysReactome
PathwaysReactome
SystemsBioModels
BioSamples
SystemsBioModels
BioSamples
Literature and ontologiesPubMC, GO
Literature and ontologiesPubMC, GO
ChemogenomicsChEMBL
ChemogenomicsChEMBL
Data Standards
COordination of Standards in MetabOlomicS
MetaboLights – metabolomics repository
