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Page 1: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
Page 2: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
https://www.virtualbox.org/
https://www.virtualbox.org/
http://download.virtualbox.org/virtualbox/5.0.16/VirtualBox-5.0.16-105871-Win.exe
http://download.virtualbox.org/virtualbox/5.0.16/VirtualBox-5.0.16-105871-OSX.dmg
http://mobaxterm.mobatek.net/
http://www.xquartz.org/
Page 3: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
ftp://ftp.cea.fr/incoming/y2k01/w4m-vms/w4m-galaxy-qwerty.ova
ftp://ftp.cea.fr/incoming/y2k01/w4m-vms/w4m-galaxy-azerty.ova
Page 4: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
http://localhost:7080
http://mobaxterm.mobatek.net/
Page 5: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
https://filesender.renater.fr/?s=download&token=da692de5-32d7-3e61-5e88-c3abd3e4444e
https://filesender.renater.fr/?s=download&token=da692de5-32d7-3e61-5e88-c3abd3e4444e
https://filesender.renater.fr/?s=download&token=da692de5-32d7-3e61-5e88-c3abd3e4444e
Page 6: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille

cd galaxy

./run.sh --daemon

http://mobaxterm.mobatek.net/
http://localhost:8080
Page 7: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
Page 8: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
Page 9: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille

tools:

- name: package_r_3_1_2 owner: iuc Tool_shed_url: https://toolshed.g2.bx.psu.edu

- name: package_r_camera_1_22_0 owner: lecorguille tool_shed_url: https://toolshed.g2.bx.psu.edu...

tool_list.yaml

https://github.com/workflow4metabolomics/w4m-vm
https://toolshed.g2.bx.psu.edu
https://toolshed.g2.bx.psu.edu
Page 10: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille
Page 11: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille

––

install-tools

https://github.com/bgruening/docker-galaxy-stable
https://github.com/bgruening/docker-galaxy-stable
Page 12: PhenoMeNal – Large-scale Computing for Medical Metabolomics · 2016. 9. 12. · tools: - name: package_r_3_1_2 owner: iuc Tool_shed_url: - name: package_r_camera_1_22_0 owner: lecorguille

● Gildas Le Corguillé (CNRS, Roscoff), [email protected].● Christophe Dupérier (INRA, Clermont-Ferrand), [email protected].● Pierrick Roger Mele (CEA, Saclay), [email protected].

mailto:[email protected]
mailto:[email protected]
mailto:[email protected]

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