phylogenetic tree template. organism genome coding scheme 1 st codon – chlorophyll 2 nd codon –...

Phylogenetic Tree

Upload: cadence-babcock

Post on 01-Apr-2015

228 views

Category:

Documents

1 download

Report

Download

Embed Size (px):

TRANSCRIPT

Phylogenetic Tree Template

Organism Genome Coding Scheme

1st Codon – Chlorophyll2nd Codon – Size of Flower (small, medium, large)3rd Codon – Mature size4th Codon – Poison Gene5th Codon – Petal Color6th Codon – Number of Petals7th Codon – Shape of Petals

Common AncestorAUG UGU AAG GCU CGC CAA AGU

Organism 1AUG UGU AAG ACU CCC CAC AAU

Organism 2AUG UUU AAG GCU GGC UAC AGU

Organism 3AUG UGU AAG GCU CGC GAC AGU

Organism 4AUG UGU AAG GCU CUC CAA AUU

Organism 5AUG UGG AAG GCU CCC CAA AGU

Organism 6AUG UGU AAG ACU CUC CAC AAU

Organism 7AUG UGU AAG GCU CUC CAA AGU

Organism 8AUG UUU AAG GCU CGC UAC AGU

Organism 9AUG UUU AAG ACU CUC CAC AAU

Organism 10AUG UGU AAG GCU CUC CAC AGU

Organism 11AUG UUU AAG GCU CGC CAC AGU

Organism 12AUG UUU AAG GCU CCC UAC AGU

Organism 13AUG UUU AAG GCU CGC GAC AGU

Organism 14AUG UGU AAG GCU CGC CAC AGU

Page 4: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 1

AUG UGU AAG ACU CCC CAC AAU

Page 5: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 2

AUG UUU AAG GCU GGC UAC AGU

Page 6: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 3

AUG UGU AAG GCU CGC GAC AGU

Page 7: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 4

AUG UGU AAG GCU CUC CAA AUU

Page 8: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 5

AUG UGG AAG GCU CCC CAA AGU

Page 9: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 6

AUG UGU AAG ACU CUC CAC AAU

Page 10: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 7

AUG UGU AAG GCU CUC CAA AGU

Page 11: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 8

AUG UUU AAG GCU CGC UAC AGU

Page 12: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 9

AUG UUU AAG ACU CUC CAC AAU

Page 13: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 10

AUG UGU AAG GCU CUC CAC AGU

Page 14: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 11

AUG UUU AAG GCU CGC CAC AGU

Page 15: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 12

AUG UUU AAG GCU CCC UAC AGU

Page 16: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 13

AUG UUU AAG GCU CGC GAC AGU

Page 17: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

ORGANISM 14

AUG UGU AAG GCU CGC CAC AGU

Page 18: Phylogenetic Tree Template. Organism Genome Coding Scheme 1 st Codon – Chlorophyll 2 nd Codon – Size of Flower (small, medium, large) 3 rd Codon – Mature

11 2 8 12 14 13 3 7 4 5 6 1 9 10 CA

Phylogenetic Tree Possible Answer

QClamp™ NRAS Codon Specific Mutation Detection Kit … · QClamp™ NRAS Codon Specific Mutation Detection Kit ... The QClamp™ NRAS Codon-Specific Mutation Detection Kit (Exons

Chlorophyll UNESCO

Chlorophyll and Chlorophyll Derivatives Interfere with ... filemolecules Article Chlorophyll and Chlorophyll Derivatives Interfere with Multi-Drug Resistant Cancer Cells and Bacteria

Codon-ImprovedCreRecombinase(iCre)Expressionin theMouse

Thousands of novel translated open reading frames in ...Anil Raj1 * †,Sidney H Wang2 ... 2006; Ma, 2015). Alternative approaches that utilize empirically-derived phylogenetic codon

Chlorophyll Biosynthesis

Chlorophyll a - EPIC · Chlorophyll a HPLC peak 41 Property Chlorophyll a Data Chlorophyll a Trivial name sufficient, see Hynninen (1991) Chi a All photosynthetic algæ and higher

Chlorophyll Breakdown in Senescent Arabidopsis Leaves. … · Chlorophyll Breakdown in Senescent Arabidopsis Leaves. Characterization of Chlorophyll Catabolites and of Chlorophyll

Codon Bias Examination measuring the effect of codon usage deviations on protein expression level

Phylogenetic structure and phylogenetic diversity of angiosperm

Integratedanalysisofindividual codon contributiontoproteinbiosynthesisrevealsa new ...juanvillada.github.io/papers_pdf/2017_DNARes_codon.pdf · 2021. 1. 27. · Gene codon optimization

Constructing Phylogenetic Trees - Shodorshodor.org › ... › calvin_cbbe11 › d2s1 › D2-2_Constructing_Phylogene… · Phylogenetic Tree Reconstruction PTR. Phylogenetic Tree

Recent Evidence for Evolution ofthe Genetic CodeEVOLUTION OFTHE GENETIC CODE 231 TABLE 1. Theuniversal aminoacid codea Codon Aminoacid Codon Aminoacid Codon Aminoacid Codon Aminoacid

Rna editing, protein splicing & codon bias

programming by example · # lookup the AA for each codon in the DNA sequence for i in range(0, end, 3): codon = seq[i:i + 3] protein+= table[codon] ... • Single line translation

Codon Optimization Tables

Codon Optimization

CUG start codon

APPLICATION NOTE CNanoDrop One/One Quantify chlorophyll a and No. T141 chlorophyll … · 2018-03-06 · Quantify chlorophyll a and chlorophyll b with a custom method Using the NanoDrop

Codon-by-Codon Modulation of Translational Speed and ...zhanglab/publications/2014/jianrong_2014_plbiol.pdfCodon-by-Codon Modulation of Translational Speed and Accuracy Via mRNA Folding

KRAS Codon 61 - · PDF fileMutectorTM KRAS Codon 61 Mutation Analysis Reagents are designed to detect and differentiate the following 5 mutations occurring in codon 61 of the KRAS

Conservation of codon optimality

QClamp™ JAK2 Codon Specific Mutation Detection Kit ... · QClamp JAK2 Codon Specific Mutation Detection Kit 1 ... QClamp™ JAK2 Codon Specific Mutation Detection Kit Instruction

Osian Chlorophyll

Codon Usage

Biosph are I - Physik — Home · Abbildung 5: Chemische Struktur der beiden Chlorophyllmolek ule. Chlorophyll a und Chlorophyll Chlorophyll a und Chlorophyll b sind eng miteinander

s6c013cbc3ea78224.jimcontent.com...Flavivirus RNA lineal RNA (9400 nucleótidos) ES-6S nrn tRNA4 Co-don aa3 Codon aa4 Indicates new peptide between aa6 and aa5 AGC Codon Codon aa6

A phylogenetic codon substitution model for antibody lineagesHotspot decay in bNAb lineages 27! The “hotspot frequency” of each sequence was defined as the number of times a 28!

QClamp™ KRAS Codon Specific Mutation Detection Kit (Exon 2 ... · The QClamp™ KRAS Mutation Detection Kit (Exon 2,3,4) is used to detect somatic mutations in codon 12, codon 13,

วิชาชีววิทยา · ปฏิกิริยาแสงในพืชชั้นสูง (วิชาสามัญ 56) 1. carotene 2. chlorophyll a 3. chlorophyll

Standard Codon Substitution Models Overestimate Purifying

Chlorophyll Cancer

Chlorophyll a - AWI · Chlorophyll a HPLC peak 41 Property Chlorophyll a Data Chlorophyll a Trivial name sufficient, see Hynninen (1991) Chi a All photosynthetic algæ and higher

Codon bias among synonymous rare variants is … weaker codon anti-codon interactions, respectively. ... The synonymous variants associated with these diseases are attributed to multiple

Monthly variability of chlorophyll and associated physical parameters ...moeseprints.incois.gov.in/226/1/Monthly variability of chlorophyll-200… · Monthly variability of chlorophyll