polymerase chain reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… ·...
TRANSCRIPT
![Page 1: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/1.jpg)
Polymerase Chain ReactionPolymerase Chain Reaction
• A process used to artificially multiply a chosen piece of genetic material.
• May also be known as DNA amplification.• One strand of DNA may yield 230 strands or
more.
![Page 2: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/2.jpg)
Uses of PCR
• DNA sequencing.
• Gene cloning.
• DNA profiling.
• Transformation.
• Making artificial genes.
![Page 3: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/3.jpg)
DNA Selection
• DNA is selected either as a complete chromosome or a fragment.
• Primers are constructed that will bind within a desired region (purple).
• Additional reaction chemicals are added.
![Page 4: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/4.jpg)
The Reaction Mixture
• Water and pH buffer• DNA to be multiplied• RNA Primers• Nucleotides • DNA Polymerase (Taq)
A T G C
A
T
CT
A C
G
![Page 5: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/5.jpg)
PCR Machine• When mixed, the reaction tubes are
placed into a PCR machine. • The machine can be set to accurately
control reaction times and changes in temperature.
![Page 6: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/6.jpg)
Splitting DNA
• DNA is heated to 950C which causes double stranded DNA to become single stranded.
![Page 7: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/7.jpg)
Adding Primers• RNA primers are prepared that base pair with a
selected sequence of DNA.• Two primers must be used.One for each strand
of the DNA.• The reaction temperature is lowered to 600C
to allow the primers to attach (anneal).
G C A U A 5’
5’ G C A U A
5’ T A G G C A T A G C C T T A T C C G T A T T C G T
A T C C G T A T C G G A A T A G G C A T A A G C A 5’
![Page 8: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/8.jpg)
Adding Nucleotides
• The reaction temperature is raised to 720Cto allow nucleotides to be added.
• Polymerase enzymes (Taq) catalyse the addition of nucleotides.
• Nucleotides are added in a 5’ to 3’ direction.
A T C C G T A T C G G A A T A G
5’ T A G G C A T A G C C T T A T C C G T A T T C G T
G C A U A 5’
G C C T T A T C C G T A T T C G A 5’ G C A U A A T C C G T A T C G G A A T A G G C A T A A G C A 5’
![Page 9: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/9.jpg)
Repeating the cycle• In the next cycle the heating and cooling steps are
repeated.• The original (red/purple) strands reproduce as per
the first cycle.• The new strands only duplicate between the primer
sites to produce blocks of a set length.
A T C C G T A T C G G A A T A G G C A U A 5’
C G T A T C G G A A T A G G C C T T A T C C G T A T T C G A 5’ G C A U A
G C A U A 5’
5’ G C A U A G C C T T A T C C G T A T
![Page 10: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/10.jpg)
1
3
2
![Page 11: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/11.jpg)
Continuing the Cycle
• The cycle is then repeated over and over again.• With each cycle the number of short fragments
rapidly increases while the number of larger fragments increases slowly.
Cycle No 0 1 2 3 4 5 6 7 8 9 10
Long fragments 2 4 6 8 10 12 14 16 18 20 22
Short Fragments
0 0 2 8 22 52 114 240 494 1004 2026
![Page 12: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/12.jpg)
30 Cycles
• After 30 cycles, if replication has occurred fully, a total of 2,147,483,648 strands could be produced.
• All but 62 will be the short length of the desired DNA fragment.
![Page 13: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/13.jpg)
Summary
Heat to 950C
Denature DNA
Cool to 600C
Anneal Primers
PCR Cycle
Add Nucleotides
Heat to 720C
Heat to 950C
Denature DNA
Cool to 600C
Anneal Primers
Heat to 720C
Add Nucleotides
![Page 14: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/14.jpg)
Questions
• What does PCR stand for?• Polymerase chain reaction.• The PCR reaction may also be known as?• DNA amplification.• In addition to DNA what are the key reactants
needed for PCR?• pH Buffer, Nucleotides, Taq enzyme, Primers.• The first step in the PCR reaction is to heat to
900C. What does this do?• Splits double stranded DNA into single strands.
![Page 15: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/15.jpg)
Questions Continued
• The next step is to lower the temperature to 600C. What is the purpose of this?
• Allows primers to be added.• What name is given to the process of joining primers
to DNA?• Annealing.• At what temperature are nucleotides added?• 720C• What name is given to the polymerase enzyme used?• Taq
![Page 16: Polymerase Chain Reaction - cashmerebiology - homecashmerebiology.wikispaces.com/file/view/… · PPT file · Web view · 2011-08-29Polymerase Chain Reaction ... to 720C to allow](https://reader031.vdocuments.net/reader031/viewer/2022030401/5a742bd77f8b9a63638ba60e/html5/thumbnails/16.jpg)
Questions continued
• In which direction are nucleotides added?• 5’ to 3’• Why is the cycle repeated many times?• To allow the rapid build up of fragment
numbers.• Name five key uses of PCR.• DNA sequencing, gene cloning, DNA profiling
transformation, making artificial genes.