prodigiosin production in e. coli
DESCRIPTION
Prodigiosin Production in E. Coli. Brian Hovey and Stephanie Vondrak. What is Prodigiosin?. A secondary metabolite of various strains of Serratia , and other Gram negative gammaproteobacteria. It is responsible for the red pigment produced by Serratia marcescens. - PowerPoint PPT PresentationTRANSCRIPT
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Prodigiosin Production in E.
ColiBrian Hovey and Stephanie Vondrak
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What is Prodigiosin?
• A secondary metabolite of various strains of Serratia, and other Gram negative gammaproteobacteria.
• It is responsible for the red pigment produced by Serratia marcescens.
• Produced under the control of 14 genes(pigA-pigN)
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S. marcescens• S. marcescens is a species
of Gram negative, rod shaped bacteria
• Grows on TSA
• Known to cause many nosocomial infections
• Thrives in high moisture environments
• Sample graciously donated by Dr. Walter
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Significance?
• Recently, has gotten attention for its newfound benefits.
• Such as: antibacterial, antifungal, antiprotozoal, antimalarial, immunosuppressive, and anticancer properties
• Has no or little toxicity to cell lines (may operate as a cell cycle regulator)
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pigI GeneWe chose pigI because it is involved in one of the beginning pathways of MBC(4-methoxy-2,2`-bipyrrole-5-carbaldehydе)
This is a precursor of prodigiosin
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Prodigiosin Pathway
G.O.I.
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Gene Info
• We located the gene sequence in NCBI, with the accession number: AJ833002, and has 1473 base pairs.
• Since from bacteria, no introns
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Gene Info• Extraction
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Primers• We will amplify the gene by PCR
• Amplification will be checked by gel electrophoresis (pigI is 53.494 kDa)
• Primers used:
• Start – 5’ ATG GCA ACC TTC ATT TCA CC 3’
• End – 5’ TCA TCG CGC ATT CAC CTC GG 3’
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Removal of Internal Restriction Sites
• There are two PstI restriction sites within the gene
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Removal of Internal Restriction Sites
• We will create primers that contain a changed nucleotide so the replicated strands do not contain the RE sites
• Strands will overlap to create a new altered segment
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Vector and Regulator
• Vector of choice will be psB2k3
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Vector and Regulator
• Regulator will be Part:BBa_I0500 - Inducible pBad/araC promoter (expose to arabinose to activate)
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Interface Vector/Gene
• Cut into vector at SpeI restriction enzyme site on plasmid
• Cut at XbaI restriction enzyme on biobrick
• Ligate
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Confirmation
• The gene will be tested for by SDS-PAGE
• pigI is 53.494 kDa
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Referenceshttp://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2005.04602.x/pdf
www.serratiamarcescens.net
http://mic.sgmjournals.org/content/150/11/3547.long#ref-46
http://microbewiki.kenyon.edu/index.php/Serratia_marcescens
http://www.ncbi.nlm.nih.gov/pubmed/18041902