provision of data - ahdb pork · provision of data how is syndromic data best reported to users?...
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Provision of Data
How is syndromic data best reported to users?
Sara Robertson
APHA Surveillance Intelligence Unit
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Topics
• The Question – How to visualise data – How to disseminate those visualisations – How to fill gaps in APHA data (touch on…)
• Highlights of the Current Process
– Submission forms – Analysis and reporting
• Vision of Some New Processes – Website – Dashboards – Discussion Forum – New Data…?....
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Submission Receipt (Signs)
Investigation / Testing
Diagnosis (Syndrome)
This is our submission form. Syndromic data from signs is available
immediately, syndromic data from diagnosis may
take weeks or months
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Quarterly Trend Analysis This is the sort of number crunching we do every quarter for the species
leads. It’s very retrospective. Something more current would be
good
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Here’s the quarterly report – providing a
review of the quarter for each main species group
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Future Vision?
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This is the APHA page on the Gov.UK website., with access to the Vet Gateway
highlighted. Neither are currently very interesting
from a surveillance viewpoint
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This is a mock up of a whole new Vet Gateway section - dedicated to the Diagnostic /Surveillance
Service
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The pig page might look like this…
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Top Diagnoses
Self Service Pig Industry Dashboards
Profiles by Syndrome
Regional Variations
etc etc etc
Trends in Clinical Signs
etc etc
Data Sets Download (with Glossary)
Top Diagnoses
Here’s a potential interface showing analyses available for practitioners, using our
VIDA data initially, and wider industry data later?
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This shows all diagnoses for all species
Note that some counties are
missing – this will soon be fixed
The user can select from picklists to see a tailored list of most common diagnoses
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Selected PIGS
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Now it’s ADULT PIGS
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We’ve selected SYSTEMIC & MISC, and Quarter 1
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Top Diagnoses
Self Service Dashboards
Profiles by Syndrome
Regional Variations
etc etc etc
Trends in Clinical Signs
etc etc
Data Sets Download (with Glossary)
Trends in Clinical Signs
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profile of clinical signs for APHA submissions
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For ADULTS there’s less diarrhoea, more reproductive disease (no surprise..)
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For post-weaned the issues are diarrhoea, respiratory and found dead….
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For pre-weaned it’s Diarrhoea and Found Dead
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Top Diagnoses
Self Service Dashboards
Profiles by Syndrome
Regional Variations
etc etc etc
Trends in Clinical Signs
Correlation of Syndrome
&Sign etc
Data Sets Download (with Glossary)
Correlation of Syndrome
&Sign
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This counts submissions by Sign and Syndrome It’s interesting to see how submissions with particular clinical signs (Y axis) end
up in different syndromes on diagnoses (X axis)
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We envisage you’d be able to see what types of submission and diagnoses make up the
figures in each cell
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Top Diagnoses
Self Service Dashboards
Profiles by Syndrome
Regional Variations
etc etc etc
Trends in Clinical Signs
Correlation of Syndrome
&Sign etc
Data Sets Download (with Glossary)
Clinical Presention of
Disease
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0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
WastingOnly Wasting/Mix UnknownRespiratoryOnly Respiratory/Mix OtherMalaiseOnly Malaise/Mix FoundDead/Mix
Clinical Presentation of: PCVD (Porcine Circovirus) Shows how some diseases can change in presentation over time – PCDV started as
a disease of wasting, but less so now.
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Other Analyses?
• Trends in test results by Region
• etc
• Depends on availability of data
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VIDA
FarmFile/LIMS
Diagnostic Data
RADAR/ LDDGs
SAM / NDOMS
Laboratory Test Data
Fallen Stock Data
Mega VIDA
VIDA Plus
New Sources
APHA Data
External Data
Mortality Mart
Populations Mart
Lab Testing Mart
Syndromic Mart
Cloud
Conversations /Engagement Data (future)
Social Media??
FPS/ PACT
APHA/External Modellers
APHA/External Statisticians
Surveillance Dashboard (SID)
(for Livestock Industry)
Business Objects/ Scanning Surveillance
Portal (SSP)
28
This is a potential vision for how data in the APHA databases could be
combined with industry data to create a more complete picture for
surveillance, available in the cloud
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We envisage an open discussion forum where
industry and government can discuss what they see in the dashboards, or out on farms
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An example of a discussion forum hosted on SharePoint in the cloud – one of many
potential options.
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End….