report of president 2011/2012 - school of agriculture ... length on nitrogen utilization efficiency...

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Report of President 2011/2012 - School of Agriculture & Food Science >> Books >> Book Chapters >> Peer Reviewed Journals >> Other Journals >> Conference Publications >> Published Reports >> Other Publications Books Professor Mike Gibney Mike Gibney (2012) Something to chew on ~ Challenging controversies in food and health. Dublin: UCD Press. Dr Helen Sheridan Feehan, J., Sheridan, H. and Egan, D. (2012) The Grasses of Ireland. Carlow: Teagasc. Back to Top Book Chapters Dr John Fry Whelan, Jackie; John Fry and Stuart Green (2012) 'Standardizing terminology for Landscape Categorization: An agri-environmental perspective' In: Marie Mianowski (eds). Irish Contemporary Landscapes in Literature and the Arts. Hampshire/New York: Palgrave Macmillan. Dr Barry John McMahon Purvis, G., Downey, L., Beever, D., Doherty, M. L., Monahan, F. J., Sheridan, H. & McMahon, B.J.; (2012) 'Development of a Sustainably-Competitive Agriculture' In: Lichtfouse, E (eds). Sustainable Agriculture Reviews. Berlin: Springer. Professor Frank Monahan Purvis, G., Downey, L., Beever, D., Doherty, M. L., Monahan, F. J., Sheridan, H. & McMahon, B.J.; (2012) 'Development of a Sustainably-Competitive Agriculture' In: Lichtfouse, E (eds). Sustainable Agriculture Reviews. Berlin: Springer. Dr Aifric O'Sullivan O'Sullivan A, Avizonis D, German JB, Slupsky CM. (2012) 'Software Tools for NMR Metabolomics' In: Encyclopedia of Magnetic Resonance. Online: John Wiley & Sons, Ltd. Dr Gordon Purvis Purvis, G., Downey, L., Beever, D., Doherty, M. L., Monahan, F. J., Sheridan, H. & McMahon, B.J.; (2012) 'Development of a Sustainably-Competitive Agriculture' In:

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Report of President 2011/2012 - School of

Agriculture & Food Science

>> Books

>> Book Chapters

>> Peer Reviewed Journals

>> Other Journals

>> Conference Publications

>> Published Reports

>> Other Publications

Books

Professor Mike Gibney

Mike Gibney (2012) Something to chew on ~ Challenging controversies in food and

health. Dublin: UCD Press.

Dr Helen Sheridan

Feehan, J., Sheridan, H. and Egan, D. (2012) The Grasses of Ireland. Carlow: Teagasc. Back to Top

Book Chapters

Dr John Fry

Whelan, Jackie; John Fry and Stuart Green (2012) 'Standardizing terminology for

Landscape Categorization: An agri-environmental perspective' In: Marie Mianowski

(eds). Irish Contemporary Landscapes in Literature and the Arts. Hampshire/New York:

Palgrave Macmillan.

Dr Barry John McMahon

Purvis, G., Downey, L., Beever, D., Doherty, M. L., Monahan, F. J., Sheridan, H. &

McMahon, B.J.; (2012) 'Development of a Sustainably-Competitive Agriculture' In:

Lichtfouse, E (eds). Sustainable Agriculture Reviews. Berlin: Springer.

Professor Frank Monahan

Purvis, G., Downey, L., Beever, D., Doherty, M. L., Monahan, F. J., Sheridan, H. &

McMahon, B.J.; (2012) 'Development of a Sustainably-Competitive Agriculture' In:

Lichtfouse, E (eds). Sustainable Agriculture Reviews. Berlin: Springer.

Dr Aifric O'Sullivan

O'Sullivan A, Avizonis D, German JB, Slupsky CM. (2012) 'Software Tools for NMR

Metabolomics' In: Encyclopedia of Magnetic Resonance. Online: John Wiley & Sons,

Ltd.

Dr Gordon Purvis

Purvis, G., Downey, L., Beever, D., Doherty, M. L., Monahan, F. J., Sheridan, H. &

McMahon, B.J.; (2012) 'Development of a Sustainably-Competitive Agriculture' In:

Lichtfouse, E (eds). Sustainable Agriculture Reviews. Berlin: Springer.

Dr Helen Sheridan

Purvis, G., Downey, L., Beever, D., Doherty, M. L., Monahan, F. J., Sheridan, H. &

McMahon, B.J.; (2012) 'Development of a Sustainably-Competitive Agriculture' In:

Lichtfouse, E (eds). Sustainable Agriculture Reviews. Berlin: Springer.

Back to Top

Peer Reviewed Journals

Dr Tommy Boland

Ryan, W., Hennessy, D., Boland, T.M., and Shalloo L., (2012) 'The effect of grazing

season length on nitrogen utilization efficiency and nitrogen balance in spring calving

dairy production systems'. Journal of Agricultural Science .

Purcell, P.J., Boland, T.M., OBrien, M., OKiely, P. (2012) 'In vitro rumen methane

output of forb species sampled in spring and summer'. Journal of Agricultural and Food

Science .

Ryan, W., Hennessy, D., Boland, T.M., and Shalloo, L., (2012) 'The effect of grazing

season length on nitrogen utilisation efficiency and nitrogen balance in spring calving

dairy production systems'. Journal of Agricultural Science .

Purcell, P.J., OBrien, M., Navarro-Villa, A., Boland, T.M., McEvoy, M., Grogan, D. and

OKiely, P. (2012) 'In vitro rumen methane output of perennial ryegrass varieties and

perennial grass species harvested throughout the growing season'. Grass and Forage

Science .

Wims C.M., McEvoy M., Delaby L., Boland T.M. and ODonovan M. (2012) 'Effect of

perennial ryegrass (Lolium perenne L.) cultivars on the milk production performance of

grazing dairy cows'. Animal .

Lillis, L., Boots, B., Kenny, D.A., Petrie, K., Boland, T.M., Clipson, N. and Doyle, E.M.

(2011) 'The effect of dietary concentrate and soya oil inclusion on microbial diversity in

the rumen of cattle'. Journal of Applied Microbiology, 111 (6):1426-1435.

Dr Lorraine Brennan

Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J.; (2012) 'Authentication of

beef production systems using a metabolomics based approach'. Animal, 6 :167-172.

Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L. (2012)

'The relationship between BMI and metabolomic profiles: a focus on amino acids'.

Proceedings of the Nutrition Society, :1-11.

Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, Cusack S, Harris HM,

Coakley M, Lakshminarayanan B, O'Sullivan O, Fitzgerald GF, Deane J, O'Connor M,

Harnedy N, O'Connor K, O'Mahony D, van Sinderen D, Wallace M, Brennan L, Stanton

C, Marchesi JR, Fitzgerald AP, Shanahan F, Hill C, Ross RP, O'Toole PW (2012) 'Gut

microbiota composition correlates with diet and health in the elderly'. Nature, 488

(7410):178-184.

Wallace M, Cottell E, Gibney MJ, McAuliffe FM, Wingfield M, Brennan L (2012) 'An

investigation into the relationship between the metabolic profile of follicular fluid,

oocyte developmental potential, and implantation outcome'. Fertility and sterility, 97

(5):1078-101.

Ni Raghallaigh S, Bender K, Lacey N, Brennan L, Powell FC (2012) 'The fatty acid

profile of the skin surface lipid layer in papulopustular rosacea'. The British journal of

dermatology, 166 (2):279-287.

Dr John Browne

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Genomics, 44 (16):799-810.

Morine MJ, Toomey S, McGillicuddy FC, Reynolds CM, Power KA, Browne JA,

Loscher C, Mills KH, Roche HM (2012) 'Network analysis of adipose tissue gene

expression highlights altered metabolic and regulatory transcriptomic activity in high-

fat-diet-fed IL-1RI knockout mice'. The Journal of nutrition .

Walsh SW, Mehta JP, McGettigan PA, Browne JA, Forde N, Alibrahim RM, Mulligan

FJ, Loftus B, Crowe MA, Matthews D, Diskin M, Mihm M, Evans AC (2012) 'Effect of

the metabolic environment at key stages of follicle development in cattle: focus on

steroid biosynthesis'. Genomics, 44 (9):504-517.

Machugh DE, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Hokamp

K, Gormley E, Magee DA (2012) 'Pan-genomic analysis of bovine monocyte-derived

macrophage gene expression in response to in vitro infection with Mycobacterium

avium subspecies paratuberculosis'. Veterinary Research, 43 (1).

McGivney BA, Browne JA, Fonseca RG, Katz LM, Machugh DE, Whiston R, Hill EW

(2012) 'MSTN genotypes in Thoroughbred horses influence skeletal muscle gene

expression and racetrack performance'. Gene .

Sheridan MP, Browne JA, MacHugh DE, Costello E, Gormley E (2012) 'Impact of

delayed processing of bovine peripheral blood on differential gene expression'. VET

IMMUNOL IMMUNOP, 145 (1-2):199-205.

Magee DA, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Conlon KM,

Lynn DJ, Hokamp K, Gordon SV, Gormley E, MacHugh DE (2012) 'Global gene

expression and systems biology analysis of bovine monocyte-derived macrophages in

response to in vitro challenge with Mycobacterium bovis'. PLoS ONE, 7 (2).

Killick KE, Browne JA, Park SD, Magee DA, Martin I, Meade KG, Gordon SV,

Gormley E, O'Farrelly C, Hokamp K, MacHugh DE (2011) 'Genome-wide

transcriptional profiling of peripheral blood leukocytes from cattle infected with

Mycobacterium bovis reveals suppression of host immune genes'. BMC Genomics, 12 .

Dr Nigel Patrick Brunton

Tiwari U, Cummins E*, Brunton N and Gallagher E; (2012) 'A Modelling Approach to

Estimate the Level and Molecular Weight Distribution of β-Glucan During the Baking

of an Oat-Based Bread'. Food and Bioprocess Technology, 5 (5):1990-2002.

Rawson, Ashish, Tiwari, Brijesh K., Tuohy, Maria, Brunton, Nigel (2012) 'Impact of

frozen storage on polyacetylene content, texture and colour in carrots disks'. Journal of

Food Engineering .

Rawson, Ashish, Brunton, Nigel, Tuohy, Maria (2012) 'High pressuretemperature

degradation kinetics of polyacetylenes in carrots'. Food Chemistry .

Keenan, Derek F., Tiwari, Brijesh K., Patras, Ankit, Gormley, Ronan, Butler, Francis,

Brunton, Nigel P. (2012) 'Effect of sonication on the bioactive, quality and rheological

characteristics of fruit smoothies'. International Journal of Food Science and

Technology .

Keenan, Derek F., R��, Christian, Gormley, Ronan, Butler, Francis, Brunton, Nigel P.

(2012) 'Effect of high hydrostatic pressure and thermal processing on the nutritional

quality and enzyme activity of fruit smoothies'. LWT -- Food Science and Technology .

Keenan, Derek F., Brunton, Nigel P., Mitchell, Michelle, Gormley, Ronan, Butler,

Francis (2012) 'Flavour profiling of fresh and processed fruit smoothies by instrumental

and sensory analysis'. Food Research International .

Keenan, Derek F., Brunton, Nigel P., Gormley, Ronan, Butler, Francis (2012)

'FUNDAMENTAL RHEOLOGY AND QUALITY CHARACTERISTICS OF SOUS-

VIDE PROCESSED APPLE PUREES CONTAINING APPLE OR BLACKCURRANT

POMACE INCLUSIONS'. Journal of Food Processing and Preservation .

Wijngaard, Hilde, Hossain, Mohammad B., Rai, Dilip K. Brunton, Nigel (2012)

'Techniques to extract bioactive compounds from food by-products of plant origin'.

Food Research International .

Rawson A., Tiwari B., Tuohy M.G., O'Donnell C.P. and Brunton, N. (2011) 'Effect of

ultrasound and blanching pretreatments on polyacetylene and carotenoid content of hot

air and freeze dried carrot discs'. Ultrasonics Sonochemistry, 18 (5):1172-1179.

Rawson, A.,Tiwari, B. K.,Tuohy, M. G.,O'Donnell, C. P.,Brunton, N.; (2011) 'Effect of

ultrasound and blanching pretreatments on polyacetylene and carotenoid content of hot

air and freeze dried carrot discs'. Ultrasonics Sonochemistry, 18 (55):1172-1179.

Dr Owen Doyle

Barry, J., Doyle, O. Grant, G. and Grogan, H. (2012) 'Supplementation of Spent

mushroom Substrate (SMS) to Improve the Structure and Productivity as a Casing

Material'. Science and Cultivation of Edible Fungi, XVIII :735-741.

Forrest, M., Doyle., O. and Hunter A.; (2011) 'Auditing of Assessment in the

Horticultural Degree Programme University College Dublin'. Acta Horticulturae, 920

:89-94.

Professor Alexander Evans

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Genomics, 44 (16):799-810.

Evans AC, Mossa F, Walsh SW, Scheetz D, Jimenez-Krassel F, Ireland JL, Smith GW,

Ireland JJ (2012) 'Effects of maternal environment during gestation on ovarian

folliculogenesis and consequences for fertility in bovine offspring'. Reproduction in

domestic animals = Zuchthygiene, 47 Suppl 4 :31-37.

Hutchinson IA, Hennessy AA, Waters SM, Dewhurst RJ, Evans AC, Lonergan P, Butler

ST (2012) 'Effect of supplementation with different fat sources on the mechanisms

involved in reproductive performance in lactating dairy cattle'. Theriogenology, 78

(1):12-27.

Cummins SB, Lonergan P, Evans AC, Butler ST (2012) 'Genetic merit for fertility traits

in Holstein cows: II. Ovarian follicular and corpus luteum dynamics, reproductive

hormones, and estrus behavior'. Journal of Dairy Science, 95 (7):3698-3710.

Cummins SB, Waters SM, Evans AC, Lonergan P, Butler ST (2012) 'Genetic merit for

fertility traits in Holstein cows: III. Hepatic expression of somatotropic axis genes

during pregnancy and lactation'. Journal of Dairy Science, 95 (7):3711-3721.

Walsh SW, Matthews D, Browne JA, Forde N, Crowe MA, Mihm M, Diskin M, Evans

AC (2012) 'Acute dietary restriction in heifers alters expression of genes regulating

exposure and response to gonadotrophins and IGF in dominant follicles'. Animal

Reproduction Science, 133 (1-2):43-51.

Mossa F, Walsh SW, Butler ST, Berry DP, Carter F, Lonergan P, Smith GW, Ireland JJ,

Evans AC (2012) 'Low numbers of ovarian follicles �3 mm in diameter are associated

with low fertility in dairy cows'. Journal of Dairy Science, 95 (5):2355-2361.

Parr MH, Mullen MP, Crowe MA, Roche JF, Lonergan P, Evans AC, Diskin MG (2012)

'Relationship between pregnancy per artificial insemination and early luteal

concentrations of progesterone and establishment of repeatability estimates for these

traits in Holstein-Friesian heifers'. Journal of Dairy Science, 95 (5):2390-2396.

Hutchinson IA, Hennessy AA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012)

'The effect of strategic supplementation with trans-10,cis-12 conjugated linoleic acid on

the milk production, estrous cycle characteristics, and reproductive performance of

lactating dairy cattle'. Journal of Dairy Science, 95 (5):2442-2451.

Mullen MP, Elia G, Hilliard M, Parr MH, Diskin MG, Evans AC, Crowe MA (2012)

'Proteomic characterization of histotroph during the preimplantation phase of the estrous

cycle in cattle'. Journal of Proteome Research, 11 (5):3004-3018.

Walsh SW, Mehta JP, McGettigan PA, Browne JA, Forde N, Alibrahim RM, Mulligan

FJ, Loftus B, Crowe MA, Matthews D, Diskin M, Mihm M, Evans AC (2012) 'Effect of

the metabolic environment at key stages of follicle development in cattle: focus on

steroid biosynthesis'. Genomics, 44 (9):504-517.

Richardson L, Hanrahan JP, Donovan A, Martí JI, Fair S, Evans AC, Lonergan P (2012)

'Effect of site of deposition on the fertility of sheep inseminated with frozen-thawed

semen'. Animal Reproduction Science, 131 (3-4):160-164.

Cummins SB, Lonergan P, Evans AC, Berry DP, Evans RD, Butler ST (2012) 'Genetic

merit for fertility traits in Holstein cows: I. Production characteristics and reproductive

efficiency in a pasture-based system'. Journal of Dairy Science, 95 (3):1310-1322.

Chapwanya A, Meade KG, Foley C, Narciandi F, Evans AC, Doherty ML, Callanan JJ,

O'Farrelly C (2012) 'The postpartum endometrial inflammatory response: a normal

physiological event with potential implications for bovine fertility'. Reproduction,

fertility, and development .

Mullen MP, Forde N, Parr MH, Diskin MG, Morris DG, Nally JE, Evans AC, Crowe

MA (2012) 'Alterations in systemic concentrations of progesterone during the early

luteal phase affect RBP4 expression in the bovine uterus'. Reproduction, fertility, and

development, 24 (5):715-722.

Pluta, K., Irwin, J.A., Dolphin, C., Richardson, L., Fitzpatrick, E., Gallagher, M.E.,

Reid, C.J, Crowe, M.A., Roche, J.F., Lonergan, P., Carrington, S.D., Evans, A,C, (2011)

'Glycoproteins and glycosidases of the cervix during the periestrous period in cattle'.

Journal of Animal Science, 89 (12):4032-4042.

Richardson L, Hanrahan JP, O'Hara L, Donovan A, Fair S, O'Sullivan M, Carrington

SD, Lonergan P, Evans AC; (2011) 'Ewe breed differences in fertility after cervical AI

with frozen-thawed semen and associated differences in sperm penetration and

physicochemical properties of cervical mucus'. Animal Reproduction Science, 129 (1-

2):37-43.

Swangchan-Uthai T, Walsh SW, Alexander SL, Cheng Z, Crowe MA, Evans AC,

Wathes DC; (2011) 'Comparison of mRNA for IGFs and their binding proteins in the

oviduct during the peri-oestrous period between dairy heifers and lactating cows'.

Reproduction (Cambridge, England), 142 (3):457-465.

Dr Alan Fahey

Meredith B.K.,Kearney J.F., Finlay, E.K., Bradley D.G.,Fahey A.G., Berry, D.P., and

Lynn D.J. (2012) 'Genome-wide associations for milk production and somatic cell score

in Holstein-Friesian cattle in Ireland'. BMC Genetics, 13 (21).

McHugh N., Evans R.D., Fahey A.G., and Berry, D.P. (2012) 'Animal muscularity and

size are genetically correlated with animal live-weight and price'. Livestock Science, 144

(1-2):11-19.

M. A. Bower, B. A. McGivney, M. G. Campana, J. Gu, L. S. Andersson, E. Barrett, C.

R. Davis, S. Mikko, F. Stock, V. Voronkova, D. G. Bradley, A. G. Fahey, G. Lindgren,

D. E. MacHugh, G. Sulimova and E. W. Hill; (2012) 'The genetic origin and history of

speed in the Thoroughbred racehorse'. Nature Communications, 3 .

Dr Trudee Fair

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Genomics, 44 (16):799-810.

Fair T, Lonergan P (2012) 'The role of progesterone in oocyte acquisition of

developmental competence'. Reproduction in Domestic Animals, 47 Suppl 4 :142-147.

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.

O'Shea LC, Mehta J, Lonergan P, Hensey C, Fair T. (2012) 'Developmental competence

in oocytes and cumulus cells: candidate genes and networks'. Reproductive Biomedicine

Online .

Matoba S, O'Hara L, Carter F, Kelly AK, Fair T, Rizos D, Lonergan P (2012) 'The

association between metabolic parameters and oocyte quality early and late postpartum

in Holstein dairy cows'. Journal of Dairy Science, 95 (3):1257-1266.

Garcia-Herreros M, Aparicio IM, Rath D, Fair T, Lonergan P (2012) 'Differential

glycolytic and glycogenogenic transduction pathways in male and female bovine

embryos produced in vitro'. Reproduction, fertility, and development, 24 (2):344-352.

O'Doherty AM, O'Shea LC, Fair T.; (2011) 'Bovine DNA Methylation Imprints Are

Established in an Oocyte Size-Specific Manner, Which Are Coordinated with the

Expression of the DNMT3 Family Proteins'. Biology of Reproduction .

Leal C, Mamo S, Fair T, Lonergan P; (2011) 'Gene Expression in Bovine Oocytes and

Cumulus Cells After Meiotic Inhibition with the Cyclin-Dependent Kinase Inhibitor

Butyrolactone I'. Reproduction in Domestic Animals .

Dr Niamh Forde

Eozenou C, Carvalho AV, Forde N, Giraud-Delville C, Gall L, Lonergan P, Auguste A,

Charpigny G, Richard C, Pannetier M, Sandra O (2012) 'FOXL2 is regulated during the

bovine estrous cycle and its expression in the endometrium is independent of conceptus-

derived interferon tau'. Biology of reproduction, 87 (2).

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Genomics, 44 (16):799-810.

Mamo S, Mehta JP, Forde N, McGettigan P, Lonergan P (2012) 'Conceptus-

endometrium crosstalk during maternal recognition of pregnancy in cattle'. Biology of

reproduction, 87 (1):1-9.

Walsh SW, Matthews D, Browne JA, Forde N, Crowe MA, Mihm M, Diskin M, Evans

AC (2012) 'Acute dietary restriction in heifers alters expression of genes regulating

exposure and response to gonadotrophins and IGF in dominant follicles'. Animal

Reproduction Science, 133 (1-2):43-51.

O'Hara L, Scully S, Maillo V, Kelly AK, Duffy P, Carter F, Forde N, Rizos D, Lonergan

P (2012) 'Effect of follicular aspiration just before ovulation on corpus luteum

characteristics, circulating progesterone concentrations and uterine receptivity in single-

ovulating and superstimulated heifers'. Reproduction, 143 (5):673-682.

Walsh SW, Mehta JP, McGettigan PA, Browne JA, Forde N, Alibrahim RM, Mulligan

FJ, Loftus B, Crowe MA, Matthews D, Diskin M, Mihm M, Evans AC (2012) 'Effect of

the metabolic environment at key stages of follicle development in cattle: focus on

steroid biosynthesis'. Genomics, 44 (9):504-517.

Rizos D, Scully S, Kelly AK, Ealy AD, Moros R, Duffy P, Al Naib A, Forde N,

Lonergan P (2012) 'Effects of human chorionic gonadotrophin administration on day 5

after oestrus on corpus luteum characteristics, circulating progesterone and conceptus

elongation in cattle'. Reproduction, fertility, and development, 24 (3):472-481.

Forde N, Lonergan P (2012) 'Transcriptomic analysis of the bovine endometrium: What

is required to establish uterine receptivity to implantation in cattle?'. The Journal of

reproduction and development, 58 (2):189-195.

Mullen MP, Forde N, Parr MH, Diskin MG, Morris DG, Nally JE, Evans AC, Crowe

MA (2012) 'Alterations in systemic concentrations of progesterone during the early

luteal phase affect RBP4 expression in the bovine uterus'. Reproduction, fertility, and

development, 24 (5):715-722.

Dr Mary Forrest

Forrest, M., Doyle., O. and Hunter A.; (2011) 'Auditing of Assessment in the

Horticultural Degree Programme University College Dublin'. Acta Horticulturae, 920

:89-94.

Dr Eileen Gibney

Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L. (2012)

'The relationship between BMI and metabolomic profiles: a focus on amino acids'.

Proceedings of the Nutrition Society, :1-11.

Professor Mike Gibney

Cashman KD, Muldowney S, McNulty B, Nugent A, Fitzgerald AP, Kiely M, Walton J,

Gibney MJ, Flynn A. (2012) 'Vitamin D status of Irish adults: findings from the

National Adult Nutrition Survey'. British Journal of Nutrition, :1-9.

Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L. (2012)

'The relationship between BMI and metabolomic profiles: a focus on amino acids'.

Proceedings of the Nutrition Society, :1-11.

Devlin UM, McNulty BA, Nugent AP, Gibney MJ. (2012) 'The use of cluster analysis to

derive dietary patterns: methodological considerations, reproducibility, validity and the

effect of energy mis-reporting'. Proceedings of the Nutrition Society, :1-11.

Tierney AC, McMonagle J, Shaw DI, Gulseth HL, Helal O, Saris WH, Paniagua JA,

Gołąbek-Leszczy� I, Defoort C, Williams CM, Karsltr��, Vessby B, Dembinska-Kiec

A, L�-Miranda J, Blaak EE, Drevon CA, Gibney MJ, Lovegrove JA, Roche HM (2011)

'Effects of dietary fat modification on insulin sensitivity and on other risk factors of the

metabolic syndrome--LIPGENE: a European randomized dietary intervention study'.

International Journal of Obesity, 35 (6):800-809.

Dr Margherita Gioria

Saunders, M, Tobin, B, Black, K, Gioria, M, Nieuwenhuis, M, Osborne, B.; (2012)

'Thinning effects on the net ecosystem carbon exchange of a Sitka spruce forest are

temperature-dependent'. Agricultural and Forest Meteorology .

Dr Olga Grant

Grant, OM; Davies, MJ; James, CM; Johnson, AW; Leinonen, I; Simpson, DW (2012)

'Thermal imaging and carbon isotope composition indicate variation amongst strawberry

(Fragaria x ananassa) cultivars in stomatal conductance and water use efficiency'.

Environmental and Experimental Botany, 76 :7-15.

Grant, OM; Davies MJ; Johnson AW, Simpson DW (2012) 'Physiological and growth

responses to water deficits in cultivated strawberry Fragaria x ananassa and in one of its

progenitors, Fragaria chiloensis'. Environmental and Experimental Botany, 83 :23-32.

Dr Emmeline Hill

Hill EW, Fonseca RG, McGivney BA, Gu J, MacHugh DE, Katz LM. ; (2012) 'MSTN

genotype (g.66493737C/T) association with speed indices in Thoroughbred racehorses'.

Journal of Applied Physiology, 112 (null):86-90.

Eivers, S.S., McGivney, B.A., Gu J., MacHugh, D.E., Katz, L.M., Hill, E.W.; (2011)

'PGC-1α encoded by the PPARGC1A gene regulates oxidative energy metabolism in

equine skeletal muscle during exercise'. Animal Genetics .

Dr Alan Hunter

Buckley, M., Gaffney, M. and Hunter, A. (2012) 'Nutrient Release rate of Compost on a

USGA Specification Golf Green'. Acta Horticulturae .

Beyene, G.T., Kehoe, E., MasSiurtain, M. and Hunter, A. (2012) 'Effect of different

substrates on rooting and flower development of primary and tertiary runners of

strawberry tray plants cv. Elsanta'. Acta Horticulturae .

G. McMahon and A.Hunter (2012) 'Determination of the effects of plant growth

regulators on Agrostis stolonifera and Poa annua'. Acta Horticulturae .

G. McMahon and A.Hunter (2012) 'Turf quality and growth suppression of Agrostis

stolonifera PennA4 with plant growth regulators and various fertiliser rates'. Acta

Horticulturae .

Gallone, A., Hunter, A. and Douglas, G.C. (2012) 'Radiosensitivity of Hebe Oratia

Beauty and Wiri Mist irradiated in vitro with -rays from 60Co'. Scientia Horticulturae,

(138):36-42.

Lekwadi, S.O., Nemesova, A., Lynch, T., Phillips, H., Hunter, A. and MacSiurtain, M.

(2012) 'Site classification and growth models for Sitka spruce plantations in Ireland'.

Forest Ecology and Management, (283):56-65.

Beyene, G.T., Kehoe, E. MacSiurtain, M. and Hunter, A. (2012) 'Effect of Different

Transplanting Dates and Runner Types on Qaulity and Yield of 'Elsanta' Strawberry'.

Acta Horticulturae, (926):483-489.

Dr Jean-Christophe Jacquier

Alexa, R.I., Mounsey, J.S., O'Kennedy, B.T., Jacquier, J.-C.; (2011) 'Oxidative stability

of water/oil mixtures as influenced by the addition of free Cu2+ or Cu-alginate gel

beads'. Food Chemistry, 129 (2):253-258.

Dr Alan Kelly

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Genomics, 44 (16):799-810.

Maillo V, Rizos D, Besenfelder U, Havlicek V, Kelly AK, Garrett M, Lonergan P

(2012) 'Influence of lactation on metabolic characteristics and embryo development in

postpartum Holstein dairy cows'. Journal of Dairy Science, 95 (7):3865-3876.

O'Hara L, Scully S, Maillo V, Kelly AK, Duffy P, Carter F, Forde N, Rizos D, Lonergan

P (2012) 'Effect of follicular aspiration just before ovulation on corpus luteum

characteristics, circulating progesterone concentrations and uterine receptivity in single-

ovulating and superstimulated heifers'. Reproduction, 143 (5):673-682.

Matoba S, O'Hara L, Carter F, Kelly AK, Fair T, Rizos D, Lonergan P (2012) 'The

association between metabolic parameters and oocyte quality early and late postpartum

in Holstein dairy cows'. Journal of Dairy Science, 95 (3):1257-1266.

Rizos D, Scully S, Kelly AK, Ealy AD, Moros R, Duffy P, Al Naib A, Forde N,

Lonergan P (2012) 'Effects of human chorionic gonadotrophin administration on day 5

after oestrus on corpus luteum characteristics, circulating progesterone and conceptus

elongation in cattle'. Reproduction, fertility, and development, 24 (3):472-481.

Al Naib A, Ward F, Kelly AK, Wade M, Marti JI, Lonergan P; (2011) 'Effect of

duration of storage at ambient temperature on fertilizing ability and mucus penetration

ability of fresh bovine sperm'. Theriogenology, 76 (6):1070-1075.

Professor Patrick Lonergan

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Genomics, 44 (16):799-810.

Gath VP, Crowe MA, O'Callaghan D, Boland MP, Duffy P, Lonergan P, Mulligan FJ

(2012) 'Effects of diet type on establishment of pregnancy and embryo development in

beef heifers'. Animal Reproduction Science, 133 (3-4):139-145.

Fair T, Lonergan P (2012) 'The role of progesterone in oocyte acquisition of

developmental competence'. Reproduction in Domestic Animals, 47 Suppl 4 :142-147.

Eozenou C, Carvalho AV, Forde N, Giraud-Delville C, Gall L, Lonergan P, Auguste A,

Charpigny G, Richard C, Pannetier M, Sandra O (2012) 'FOXL2 is regulated during the

bovine estrous cycle and its expression in the endometrium is independent of conceptus-

derived interferon tau'. Biology of reproduction, 87 (2).

Hutchinson IA, Hennessy AA, Waters SM, Dewhurst RJ, Evans AC, Lonergan P, Butler

ST (2012) 'Effect of supplementation with different fat sources on the mechanisms

involved in reproductive performance in lactating dairy cattle'. Theriogenology, 78

(1):12-27.

Cummins SB, Lonergan P, Evans AC, Butler ST (2012) 'Genetic merit for fertility traits

in Holstein cows: II. Ovarian follicular and corpus luteum dynamics, reproductive

hormones, and estrus behavior'. Journal of Dairy Science, 95 (7):3698-3710.

Cummins SB, Waters SM, Evans AC, Lonergan P, Butler ST (2012) 'Genetic merit for

fertility traits in Holstein cows: III. Hepatic expression of somatotropic axis genes

during pregnancy and lactation'. Journal of Dairy Science, 95 (7):3711-3721.

Maillo V, Rizos D, Besenfelder U, Havlicek V, Kelly AK, Garrett M, Lonergan P

(2012) 'Influence of lactation on metabolic characteristics and embryo development in

postpartum Holstein dairy cows'. Journal of Dairy Science, 95 (7):3865-3876.

Mamo S, Mehta JP, Forde N, McGettigan P, Lonergan P (2012) 'Conceptus-

endometrium crosstalk during maternal recognition of pregnancy in cattle'. Biology of

reproduction, 87 (1):1-9.

O'Hara L, Scully S, Maillo V, Kelly AK, Duffy P, Carter F, Forde N, Rizos D, Lonergan

P (2012) 'Effect of follicular aspiration just before ovulation on corpus luteum

characteristics, circulating progesterone concentrations and uterine receptivity in single-

ovulating and superstimulated heifers'. Reproduction, 143 (5):673-682.

Mossa F, Walsh SW, Butler ST, Berry DP, Carter F, Lonergan P, Smith GW, Ireland JJ,

Evans AC (2012) 'Low numbers of ovarian follicles �3 mm in diameter are associated

with low fertility in dairy cows'. Journal of Dairy Science, 95 (5):2355-2361.

Parr MH, Mullen MP, Crowe MA, Roche JF, Lonergan P, Evans AC, Diskin MG (2012)

'Relationship between pregnancy per artificial insemination and early luteal

concentrations of progesterone and establishment of repeatability estimates for these

traits in Holstein-Friesian heifers'. Journal of Dairy Science, 95 (5):2390-2396.

Hutchinson IA, Hennessy AA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012)

'The effect of strategic supplementation with trans-10,cis-12 conjugated linoleic acid on

the milk production, estrous cycle characteristics, and reproductive performance of

lactating dairy cattle'. Journal of Dairy Science, 95 (5):2442-2451.

O'Shea LC, Mehta J, Lonergan P, Hensey C, Fair T (2012) 'Developmental competence

in oocytes and cumulus cells: candidate genes and networks'. Biology of reproduction,

58 (2):88-101.

Richardson L, Hanrahan JP, Donovan A, Martí JI, Fair S, Evans AC, Lonergan P (2012)

'Effect of site of deposition on the fertility of sheep inseminated with frozen-thawed

semen'. Animal Reproduction Science, 131 (3-4):160-164.

Matoba S, O'Hara L, Carter F, Kelly AK, Fair T, Rizos D, Lonergan P (2012) 'The

association between metabolic parameters and oocyte quality early and late postpartum

in Holstein dairy cows'. Journal of Dairy Science, 95 (3):1257-1266.

Cummins SB, Lonergan P, Evans AC, Berry DP, Evans RD, Butler ST (2012) 'Genetic

merit for fertility traits in Holstein cows: I. Production characteristics and reproductive

efficiency in a pasture-based system'. Journal of Dairy Science, 95 (3):1310-1322.

Rizos D, Scully S, Kelly AK, Ealy AD, Moros R, Duffy P, Al Naib A, Forde N,

Lonergan P (2012) 'Effects of human chorionic gonadotrophin administration on day 5

after oestrus on corpus luteum characteristics, circulating progesterone and conceptus

elongation in cattle'. Reproduction, fertility, and development, 24 (3):472-481.

Forde N, Lonergan P (2012) 'Transcriptomic analysis of the bovine endometrium: What

is required to establish uterine receptivity to implantation in cattle?'. The Journal of

reproduction and development, 58 (2):189-195.

Garcia-Herreros M, Aparicio IM, Rath D, Fair T, Lonergan P (2012) 'Differential

glycolytic and glycogenogenic transduction pathways in male and female bovine

embryos produced in vitro'. Reproduction, fertility, and development, 24 (2):344-352.

Lonergan P; (2011) 'Influence of progesterone on oocyte quality and embryo

development in cows'. Theriogenology, 76 (9):1594-1601.

Pluta, K., Irwin, J.A., Dolphin, C., Richardson, L., Fitzpatrick, E., Gallagher, M.E.,

Reid, C.J, Crowe, M.A., Roche, J.F., Lonergan, P., Carrington, S.D., Evans, A,C, (2011)

'Glycoproteins and glycosidases of the cervix during the periestrous period in cattle'.

Journal of Animal Science, 89 (12):4032-4042.

Richardson L, Hanrahan JP, O'Hara L, Donovan A, Fair S, O'Sullivan M, Carrington

SD, Lonergan P, Evans AC; (2011) 'Ewe breed differences in fertility after cervical AI

with frozen-thawed semen and associated differences in sperm penetration and

physicochemical properties of cervical mucus'. Animal Reproduction Science, 129 (1-

2):37-43.

Al Naib A, Ward F, Kelly AK, Wade M, Marti JI, Lonergan P; (2011) 'Effect of

duration of storage at ambient temperature on fertilizing ability and mucus penetration

ability of fresh bovine sperm'. Theriogenology, 76 (6):1070-1075.

Leal C, Mamo S, Fair T, Lonergan P; (2011) 'Gene Expression in Bovine Oocytes and

Cumulus Cells After Meiotic Inhibition with the Cyclin-Dependent Kinase Inhibitor

Butyrolactone I'. Reproduction in Domestic Animals .

Dr Bridget Lynch

O'Connor, P.J., Hennessy, D., Brophy, C., O'Donovan, M. and Lynch, M.B. (2012) 'The

effect of the nitrification inhibitor dicyandiamide (DCD) on herbage production when

applied at differenct times and rates in the autumn and winter'. Agriculture, Ecosystems

and Environment, 152 :79-89.

Dr James Lyng

Caminiti, I.M., Noci, F., Muñoz, A., Whyte, P., Morgan, D.J., Cronin, D.A., Lyng, J.G.;

(2012) 'Impact of selected combinations of non-thermal processing technologies on the

quality of an apple and cranberry juice blend'. Food Chemistry, 124 (4):1387-1392.

Caminiti, Irene M.; Noci, Francesco; Morgan, Desmond J.; Cronin, Denis A.; Lyng,

James G. (2012) 'The effect of pulsed electric fields, ultraviolet light or high intensity

light pulses in combination with manothermosonication on selected physico-chemical

and sensory attributes of an orange and carrot juice blend'. Food and Bioproducts

Processing, 90 :442-448.

Munoz, A.; Palgan, I.; Noci, F.; Cronin, D. A.; Morgan, D. J.; Whyte, P.; Lyng, J. G.

(2012) 'Combinations of selected non-thermal technologies and antimicrobials for

microbial inactivation in a buffer system'. Food Research International, 47 (1):100-105.

Palgan, I.; Munoz, A.; Noci, F.; Whyte, P.; Morgan, D. J.; Cronin, D. A.; Lyng, J. G.

(2012) 'Effectiveness of combined Pulsed Electric Field (PEF) and

Manothermosonication (MTS) for the control of Listeria innocua in a smoothie type

beverage'. Food Control, 25 (2):621-625.

Haughton, P. N.; Lyng, J. G.; Cronin, D. A.; Morgan, D. J.; Fanning, S.; Whyte, P.

(2012) 'Efficacy of pulsed electric fields for the inactivation of indicator microorganisms

and foodborne pathogens in liquids and raw chicken'. Food Control, 25 (1):131-135.

Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Noci, F., Fanning, S., Whyte,

P. ; (2012) 'An evaluation of the potential of high intensity ultrasound for improving the

microbial safety of poultry'. Food and Bioprocess Technology, 5 (3):992-998.

Caminiti, Irene M.; Palgan, Izabela; Munoz, Arantxa; Noci, Francesco; Whyte, Paul;

Morgan, Desmond J.; Cronin, Denis A.; Lyng, James G. (2012) 'The Effect of

Ultraviolet Light on Microbial Inactivation and Quality Attributes of Apple Juice'. Food

and Bioprocess Technology, 5 (2):680-686.

Zell, Markus; Lyng, James G.; Morgan, Desmond J.; Cronin, Denis A. (2012) 'Quality

Evaluation of an Ohmically Cooked Ham Product'. Food and Bioprocess Technology, 5

(1):265-272.

Munoz, A.,Caminiti, I. M.,Palgan, I.,Pataro, G.,Noci, F.,Morgan, D. J.,Cronin, D.

A.,Whyte, P.,Ferrari, G.,Lyng, J. G.; (2012) 'Effects on Escherichia coli inactivation and

quality attributes in apple juice treated by combinations of pulsed light and

thermosonication'. Food Research International, 45 (1):299-305.

Haughton, P.N., Lyng, J., Cronin, C., Fanning, S., Whyte, P. (2012) 'Effect of crust

freezing applied alone and in combination with ultraviolet light on the survival of

Campylobacter on raw chicken'. Food Microbiology, 32 :147-151.

Arimi, J., Duggan, E., Lyng, J. A., ORiordan, E.D., OSullivan, M; (2012) 'Crispiness of

a microwave-expanded imitation cheese: Mechanical, acoustic and sensory evaluation'.

Journal of Food Engineering, 108 :403-409.

Palgan, I.,Caminiti, I. M.,Munoz, A.,Noci, F.,Whyte, P.,Morgan, D. J.,Cronin, D.

A.,Lyng, J. G.; (2011) 'Combined effect of selected non-thermal technologies on

Escherichia coli and Pichia fermentans inactivation in an apple and cranberry juice blend

and on product shelf life'. International Journal of Food Microbiology, 151 (11):1-61.

Dr MᩲtᩲMac Sirtᩲ

Lekwadi, S.O., Nemesova, A., Lynch, T., Phillips, H., Hunter, A., Mac Sirt�, M. (2012)

'Site classification and growth models for Sitka spruce plantations in Ireland'. Forest

Ecology and Management, 283 :56-65.

Professor David MacHugh

Magee, David A., Taraktsoglou, Maria, Killick, Kate E., Nalpas, Nicolas C., Browne,

John A., Park, Stephen D. E., Conlon, Kevin M., Lynn, David J., Hokamp, Karsten,

Gordon, Stephen V., Gormley, Eamonn, MacHugh, David E. (2012) 'Global gene

expression and systems biology analysis of bovine monocyte-derived macrophages in

response to in vitro challenge with Mycobacterium bovis'. PLoS ONE, 7 (2).

Eivers, S. S., McGivney, B. A., Gu, J., MacHugh, D. E., Katz, L. M., Hill, E. W. (2012)

'PGC-1 alpha encoded by the PPARGC1A gene regulates oxidative energy metabolism

in equine skeletal muscle during exercise'. Animal Genetics, 43 (2):153-162.

MacHugh, David E., Taraktsoglou, Maria, Killick, Kate E., Nalpas, Nicolas C., Browne,

John A., Park, Stephen D. E., Hokamp, Karsten, Gormley, Eamonn, Magee, David A.

(2012) 'Pan-genomic analysis of bovine monocyte-derived macrophage gene expression

in response to in vitro infection with Mycobacterium avium subspecies

paratuberculosis'. Veterinary Research, 43 .

Magee, David A., Taraktsoglou, Maria, Killick, Kate E., Nalpas, Nicolas C., Browne,

John A., Park, Stephen D. E., Conlon, Kevin M., Lynn, David J., Hokamp, Karsten,

Gordon, Stephen V., Gormley, Eamonn, MacHugh, David E. (2012) 'Global Gene

Expression and Systems Biology Analysis of Bovine Monocyte-Derived Macrophages

in Response to In Vitro Challenge with Mycobacterium bovis'. PLoS ONE, 7 (2).

Berkowicz, E. W., Magee, D. A., Berry, D. P., Sikora, K. M., Howard, D. J., Mullen, M.

P., Evans, R. D., Spillane, C., MacHugh, D. E. (2012) 'Single nucleotide polymorphisms

in the imprinted bovine insulin-like growth factor 2 receptor gene (IGF2R) are

associated with body size traits in Irish Holstein-Friesian cattle'. Animal Genetics, 43

(1):81-87.

Kijas, James W., Lenstra, Johannes A., Hayes, Ben, Boitard, Simon, Porto Neto, Laercio

R., San Cristobal, Magali, Servin, Bertrand, McCulloch, Russell, Whan, Vicki, Gietzen,

Kimberly, Paiva, Samuel, Barendse, William, Ciani, Elena, Raadsma, Herman,

McEwan, John, Dalrymple, Brian, International Sheep Genomics Consortium, Members

(2012) 'Genome-wide analysis of the world's sheep breeds reveals high levels of historic

mixture and strong recent selection'. PLoS Biology, 10 (2).

Meade, Kieran G., O'Gorman, Grace M., Narciandi, Fernando, MacHugh, David E.,

O'Farrelly, Cliona (2012) 'Functional characterisation of bovine interleukin 8 promoter

haplotypes in vitro'. Molecular Immunology, 50 (1-2):108-116.

Bower, Mim A., McGivney, Beatrice A., Campana, Michael G., Gu, Jingjing,

Andersson, Lisa S., Barrett, Elizabeth, Davis, Catherine R., Mikko, Sofia, Stock, Frauke,

Voronkova, Valery, Bradley, Daniel G., Fahey, Alan G., Lindgren, Gabriella, MacHugh,

David E., Sulimova, Galina, Hill, Emmeline W. (2012) 'The genetic origin and history

of speed in the Thoroughbred racehorse'. Nature Communications, 3 .

Hill, Emmeline W., Fonseca, Rita G., McGivney, Beatrice A., Gu, Jingjing, MacHugh,

David E., Katz, Lisa M. (2012) 'MSTN genotype (g.66493737C/T) association with

speed indices in Thoroughbred racehorses'. Journal of Applied Physiology, 112 (1):86-

90.

Mullen, Michael P., Creevey, Christopher J., Berry, Donagh P., McCabe, Matt S.,

Magee, David A., Howard, Dawn J., Killeen, Aideen P., Park, Stephen D., McGettigan,

Paul A., Lucy, Matt C., MacHugh, David E., Waters, Sinead M. (2012) 'Polymorphism

discovery and allele frequency estimation using high-throughput DNA sequencing of

target-enriched pooled DNA samples'. BMC Genomics, 13 .

Sheridan, Michael P., Browne, John A., MacHugh, David E., Costello, Eamon,

Gormley, Eamonn (2012) 'Impact of delayed processing of bovine peripheral blood on

differential gene expression'. Veterinary Immunology and Immunopathology, 145 (1-

2):199-205.

Killick, Kate E., Browne, John A., Park, Stephen D. E., Magee, David A., Martin, Irene,

Meade, Kieran G., Gordon, Stephen V., Gormley, Eamonn, O'Farrelly, Cliona, Hokamp,

Karsten, MacHugh, David E. (2011) 'Genome-wide transcriptional profiling of

peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals

suppression of host immune genes'. BMC Genomics, 12 .

Dr David Magee

Mullen, M. P., Creevey, C. J., Berry, D. P., McCabe, M. S., Magee, D. A., Howard, D.

J., Killeen, A. P., Park, S. D., McGettigan, P. A., Lucy, M. C., Machugh, D. E., Waters,

S. M. (2012) 'Polymorphism discovery and allele frequency estimation using high-

throughput DNA sequencing of target-enriched pooled DNA samples'. BMC Genomics,

13 .

Machugh DE, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Hokamp

K, Gormley E, Magee DA (2012) 'Pan-genomic analysis of bovine monocyte-derived

macrophage gene expression in response to in vitro infection with Mycobacterium

avium subspecies paratuberculosis'. Veterinary Research, 43 (1).

Berkowicz EW, Magee DA, Berry DP, Sikora KM, Howard DJ, Mullen MP, Evans RD,

Spillane C, MacHugh DE (2012) 'Single nucleotide polymorphisms in the imprinted

bovine insulin-like growth factor 2 receptor gene (IGF2R) are associated with body size

traits in Irish Holstein-Friesian cattle'. Animal Genetics, 43 (1):81-87.

Magee DA, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Conlon KM,

Lynn DJ, Hokamp K, Gordon SV, Gormley E, MacHugh DE (2012) 'Global gene

expression and systems biology analysis of bovine monocyte-derived macrophages in

response to in vitro challenge with Mycobacterium bovis'. PLoS ONE, 7 (2).

Killick KE, Browne JA, Park SD, Magee DA, Martin I, Meade KG, Gordon SV,

Gormley E, O'Farrelly C, Hokamp K, MacHugh DE (2011) 'Genome-wide

transcriptional profiling of peripheral blood leukocytes from cattle infected with

Mycobacterium bovis reveals suppression of host immune genes'. BMC Genomics, 12 .

Dr Barry John McMahon

McMahon, B.J., Copland, Kirwan, L. Purvis, G. & Whelan, J. (2012) 'Survey evaluation

for species richness of farmland birds'. Irish Birds .

McMahon, B.J., Anderson, A., Carnus, T., Helden, A.J., Kelly-Quinn, M., Maki, A.,

Sheridan, H., and Purvis, G. (2012) 'Different bioindicators measured at different spatial

scales vary in their response to agricultural intensity'. Ecological Indicators, 18:676-683

.

McMahon, B.J., Johansson, M.P., Piertney, S.B, Buckley, K. & H��nd, J. ; (2012)

'Genetic variation among endangered Irish red grouse (Lagopus lagopus hibernicus)

populations: implications for conservation and management'. Conservation Genetics, 13

:639-647.

Johansson, M.P., McMahon, B.J., H��nd, J. & Segelbacher, G.; (2012) 'Amplification

success of multilocus genotypes from feathers found in the field compared with feathers

obtained from shot birds'. Ibis, (154):15-20.

Sheridan, H., McMahon, B.J., Carnus, T., Finn, J.A., Helden, A.J., Kinsella, A. &

Purvis, G. ; (2011) 'Pastoral farmland habitat diversity in south-east Ireland'.

Agriculture, Ecosystems and Environment, 144 :130-135.

Professor Frank Monahan

Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J.; (2012) 'Authentication of

beef production systems using a metabolomics based approach'. Animal, 6 :167-172.

Zazzo, A., Bendrey, R., Vella, D., Moloney, A.P., Monahan, F.J., Schmidt, O. (2012) 'A

refined sampling strategy for intra-tooth stable isotope analysis of mammalian enamel'.

Geochimica Et Cosmochimica Acta, 84 :1-13.

Moloney, A.P., Kennedy, C., Noci, F., Monahan, F.J., Kerry, J.P. (2012) 'Lipid and

colour stability of m. longissimus muscle from lambs fed camelina or linseed as oil or

seeds'. Meat Science, 92 :1-7.

Monahan, F.J., Moloney, A.P., Osorio, M.T., R��e, F.T., Schmidt, O. and Brennan, L.

(2012) 'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in

Food Science & Technology .

Contini, C., Katsikogianni, M.G., O'Neill, F.T., O'Sullivan, M., Dowling, D.P.,

Monahan, F.J.; (2012) 'PET trays coated with Citrus extract exhibit antioxidant activity

with cooked turkey meat'. LWT -- Food Science and Technology, 47 :471-477.

Zazzo, A., Monahan, F.J., Moloney, A.P., Green, S. and Schmidt, O. ; (2011) 'Sulphur

isotopes in animal hair track distance to sea'. Rapid Communications in Mass

Spectrometry, 25 (17):2371-2378.

Dr Aine Ni Dhubhain

Upton,V., N� hubh�,A., Bullock, C (2012) 'Preferences and values for afforestation:

The effects of location and respondent understanding on forest attributes in a labelled

choice experiment'. Forest Policy and Economics, 23 :17-27.

Farrelly, N., NiDhubhain, A. and Nieuwenhuis, M. ; (2011) 'The productivity of Sitka

spruce in relation to site quality measures: relationships and predictions at two

geographic scales in Ireland'. Forest Ecology and Management, 262 (12):2199-2206.

Professor Maarten Nieuwenhuis

McInerney,D., Barrett, F., Rosengren, M., Jonsson, C., Harper, C. and Nieuwenhuis, M.

(2012) 'Multi-temporal Forest Cover Mapping and Change Detection in Ireland using

Medium Resolution Satellite Imagery'. International Journal of Applied Remote Sensing

.

Tobin, B. and Nieuwenhuis, M. (2012) 'Forest carbon research in Ireland: the

importance of long-term monitoring of forest growth and climate'. Earthzine .

Saunders, M., Tobin, B., Black, K., Niewuenhuis, M. and Osborne, B. (2012) 'Thinning

effects on the net ecosystem carbon exchange of a Sitka spruce forest are temperature-

dependent'. Agricultural and Forest Meteorology, 157:1-10 .

Samuel Olajuyigbe, Brian Tobin, Maarten Nieuwenhuis (2012) 'The measurement of

woody root decomposition using two methodologies in a Sitka spruce forest ecosystem'.

Plant and Soil, 360 (1&2):77-91.

Samuel Olajuyigbe, Brian Tobin, Matthew Saunders, Maarten Nieuwenhuis; (2012)

'Forest thinning and soil respiration in a Sitka spruce forest in Ireland'. Agricultural and

Forest Meteorology, 157 :86-95.

McInerney, D., Suarez-Minguez, J. and Nieuwenhuis, M.; (2011) 'Extending Forest

Inventories and Monitoring Programmes Using Remote Sensing: A Review'. Irish

Forestry, 68 (1&2):6-22.

Niall Farrelly, ine N� hubh�, and Maarten Nieuwenhuis; (2011) 'Modelling and

mapping the potential productivity of Sitka spruce from site factors in Ireland'. Irish

Forestry, 68 (1&2):23-40.

Farrelly, N., NiDhubhain, A. and Nieuwenhuis, M. ; (2011) 'The productivity of Sitka

spruce in relation to site quality measures: relationships and predictions at two

geographic scales in Ireland'. Forest Ecology and Management, 262 (12):2199-2206.

O Olajuyigbe, S., Tobin, B., Gardiner, P. and Nieuwenhuis, M. ; (2011) 'Stocks and

decay dynamics of above- and belowground coarse woody debris in managed Sitka

spruce forests in Ireland'. Forest Ecology and Management, 262 (6):1109-1118.

Dr Francesco Noci

Munoz, A.,Caminiti, I. M.,Palgan, I.,Pataro, G.,Noci, F.,Morgan, D. J.,Cronin, D.

A.,Whyte, P.,Ferrari, G.,Lyng, J. G.; (2012) 'Effects on Escherichia coli inactivation and

quality attributes in apple juice treated by combinations of pulsed light and

thermosonication'. Food Research International, 45 (1):299-305.

Palgan, I.,Caminiti, I. M.,Munoz, A.,Noci, F.,Whyte, P.,Morgan, D. J.,Cronin, D.

A.,Lyng, J. G.; (2011) 'Combined effect of selected non-thermal technologies on

Escherichia coli and Pichia fermentans inactivation in an apple and cranberry juice blend

and on product shelf life'. International Journal of Food Microbiology, 151 (11):1-61.

Dr Anne Nugent

Danika M. Martyn*, Breige A. McNulty, Anne P. Nugent, Michael J. Gibney (2012)

'Food additives and pre-school children'. Proceedings of the Nutrition Society .

Cashman KD, Muldowney S, McNulty B, Nugent A, Fitzgerald AP, Kiely M, Walton J,

Gibney MJ, Flynn A. (2012) 'Vitamin D status of Irish adults: findings from the

National Adult Nutrition Survey'. British Journal of Nutrition .

Devlin NFC, Mc Nulty BN, Gibney MJ, Thielecke F, Smith H, Nugent AP (2012)

'Whole grain intakes in the diets of Irish children and teenagers'. British Journal of

Nutrition .

Leite JC, Hearty AP, Nugent AP, Gibney MJ (2011) 'A method for assessing dietary

intakes of n-3 long-chain polyunsaturated fatty acids and trans fatty acids in an Irish

adult population'. International Journal of Food Science and Nutrition .

Dr Deirdre O'Connor

Dowler, E.A and O Connor,D. ; (2011) 'Rights Based Approaches to Addressing Food

Poverty and Food Insecurity in Ireland and the UK'. Social Science and Medicine .

Mr Alan O'Doherty

O'Doherty AM, O'Shea LC, Fair T.; (2011) 'Bovine DNA Methylation Imprints Are

Established in an Oocyte Size-Specific Manner, Which Are Coordinated with the

Expression of the DNMT3 Family Proteins'. Biology of Reproduction .

Professor John O'Doherty

Bojlul Bahar, John V. ODoherty and Torres Sweeney (2012) 'Chitooligosaccharide

elicits acute inflammatory cytokine response through AP-1 pathway in human intestinal

epithelial-like (Caco-2) cells'. Molecular immunology, 51 :283-291.

O'Shea, C.J., Sweeney, T., Bahar, B., Ryan, M.T. and J.V. ODoherty (2012) 'Singular

consumption of either Lactobacillus plantarum or inulin reduces manure odour from

finishing pigs, however this is negated when offered in combination'. Journal of Animal

Science .

Moroney, NC and O'Grady, MN and O'Doherty, JV and Kerry, JP (2012) 'Addition of

seaweed Laminaria digitata extracts containing laminarin and fucoidan to porcine diets:

Influence on the quality and shelf-life of fresh pork'. Meat Science .

Walsh, AM and Sweeney, T. and Bahar, B. and Flynn, B. and O'Doherty, JV (2012)

'The effects of supplementing varying molecular weights of chitooligosaccharide on

performance, selected microbial populations and nutrient digestibility in the weaned

pig'. animal, 1 (1):1-9.

Leonard, SG and Sweeney, T. and Bahar, B. and O�Doherty, JV (2012) 'Effect of

maternal seaweed extract supplementation on suckling piglet growth, humoral

immunity, selected microflora, and immune response after an ex vivo lipopolysaccharide

challenge'. Journal of Animal Science, 90 (2):505-514.

T. Sweeney, C. Collins, P. Reilly, K.P. Pierce and J.V. ODoherty (2012) 'Effect of

purified β-glucans derived from Laminaria digitata, Laminaria hyperborea and

Saccharomyces cerevisiae on piglet performance, selected bacterial populations, volatile

fatty acids and pro-inflammatory cytokines in the gastrointestinal tract of pigs'. British

Journal of Nutrition .

A. M. Walsh, T. Sweeney, B. Bahar, B. Flynn and J. V. O'Doherty (2012) 'The effect of

chitooligosaccharide supplementation on intestinal morphology, selected microbial

populations, volatile fatty acidconcentrations and immune gene expression in the

weaned pig'. Animal .

S. G. Leonard, T. Sweeney, B. Bahar and J. V. ODoherty (2012) 'Effect of maternal

seaweed extract supplementation on suckling piglet growth, humoral immunity, selected

microflora, and immune response after an ex vivo lipopolysaccharide challenge'.

Journal of Animal Science, 90 (2):505-514.

Alam T, Bahar B, Waters SM, McGee M, O'Doherty JV, Sweeney T; (2012) 'Functional

characterisation of the bovine neuropeptide Y gene promoter and evaluation of the

transcriptional activities of promoter haplotypes'. Molecular biology reports,

PMID:21562764 .

Alam T, Bahar B, Waters SM, McGee M, O'Doherty JV, Sweeney T. (2012) 'Functional

characterisation of the bovine Neuropeptide Y gene promoter and evaluation of the

transcriptional activities of promoter haplotypes'. Molecular biology reports, 39 (2):919-

928.

Sweeney T, Dillon S, Fanning J, Egan J, Figat S, Gutierrez JJM, Mannion C, Leonard F

and ODoherty JV; (2011) 'The effects of seaweed extracts and organic acids on digestive

fermentation and selective micro biota in newly weaned pigs experimentally challenged

with Salmonella Typhimurium'. Animal Feed Science and Technology, 165 :85-94.

Pauly C, Spring P, Gahan D and ODoherty JV ; (2011) 'The effect of cereal type and

enzyme supplementation on carcass characteristics, volatile fatty acids and intestinal

microflora and boar taint in entire male pigs'. Animal, 5 (3):378-386.

S. G. Leonard, T. Sweeney, B. Bahar, B. P. Lynch and J. V. ODoherty ; (2011) 'Effects

of dietary seaweed extract supplementation in sows and post-weaned pigs on

performance, intestinal morphology, intestinal microflora and immune status'. British

Journal of Nutrition, 106 (5):688-699.

Sweeney, T. and Dillon, S. and Fanning, J. and Egan, J. and O'Shea, CJ and Figat, S.

and Gutierrez, JJM and Mannion, C. and Leonard, F. and O'Doherty, JV (2011)

'Evaluation of seaweed-derived polysaccharides on indices of gastrointestinal

fermentation and selected populations of microbiota in newly weaned pigs challenged

with< i> Salmonella Typhimurium'. Animal Feed Science and Technology, 165 (1):85-

94.

S. G. Leonard, T. Sweeney, B. Bahar and J. V. ODoherty; (2011) 'Effect of maternal

seaweed extract supplementation on suckling piglet growth, humoral immunity, selected

microflora, and immune response after an ex vivo lipopolysaccharide challenge'.

Journal of Animal Science .

Dr Conor O'Reilly

Hogg, B.V., Kacprzyk, K., Molony, E.M., O'Reilly, C. Gallagher, T.F. Gallois, P., and

McCabe, P.F. (2011) 'An in vivo root hair assay for determining rates of apoptotic-like

programmed cell death in plants'. Plant Methods, 7 (45):1746-4811.

Professor Dolores O'Riordan

Halpin RM, Brady DB, O'Riordan ED, O'Riordan, D.; (2011) 'Determination of the

effect of dairy powderson adherence of Streptococus sobrinus and Streptococcus

salivarius to hyroxylapetite and the growth of these bacteria'. Journal of Functional

Foods, 3 (4):280-289.

Dr Sharon O'Rourke

O'Rourke, S.M. and N.H. Holden; (2012) 'Determination of soil organic matter and

carbon fractions in forest topsoils using VIS-NIR hyperspectral imaging'. Soil Science

Society of America Journal, 76 (2):586-596.

Dr Aifric O'Sullivan

Zivkovic A, Yang J, Georgi K, Hegedus C, Nording M, O'Sullivan A, German JB, Hogg

R, Weiss R, Bay C, Hammock, B. (2012) 'Serum oxylipin profiles in IgA nephropathy

patients reflect kidney functional alterations'. Metabolomics, 8 (6).

Mr Mick O'Sullivan

Contini, C., Katsikogianni, M.G., O'Neill, F.T., O'Sullivan, M., Dowling, D.P.,

Monahan, F.J.; (2012) 'PET trays coated with Citrus extract exhibit antioxidant activity

with cooked turkey meat'. LWT -- Food Science and Technology, 47 :471-477.

Arimi, J., Duggan, E., Lyng, J. A., ORiordan, E.D., OSullivan, M; (2012) 'Crispiness of

a microwave-expanded imitation cheese: Mechanical, acoustic and sensory evaluation'.

Journal of Food Engineering, 108 :403-409.

Richardson L, Hanrahan JP, O'Hara L, Donovan A, Fair S, O'Sullivan M, Carrington

SD, Lonergan P, Evans AC; (2011) 'Ewe breed differences in fertility after cervical AI

with frozen-thawed semen and associated differences in sperm penetration and

physicochemical properties of cervical mucus'. Animal Reproduction Science, 129 (1-

2):37-43.

Dr Karina Pierce

Whelan, S. J.,F.J. Mulligan, J.J Callan, B. Flynn, and K.M. Pierce (2012) 'Effect of

forage source and a supplementary methionine hydroxyl analogue on rumen

fermentation parameters in lactating dairy cows offered a low crude protein diet'. Animal

Feed Science and Technology .

Whelan, S. J., K. M. Pierce, B. Flynn, and F. J. Mulligan (2012) 'Effect of supplemental

concentrate type on milk production and metabolic status in early-lactation dairy cows

grazing perennial ryegrass-based pasture'. Journal of Dairy Science .

Archbold H, Shalloo L, Kennedy, E, Pierce KM and Buckley F (2012) 'Influence of age,

body weight and body condition score before mating start date on the pubertal rate of

maiden HolsteinFriesian heifers and implications for subsequent cow performance and

profitability'. Animal .

McCarthy B, Pierce KM, Delaby L, Brennan A and Horan B (2012) 'The effect of

stocking rate and calving date on milk production and dry matter intake of Holstein-

Friesian dairy cows'. Journal of Dairy Science .

R. Prendiville, L. Shalloo, K.M. Pierce and F. Buckley (2012) 'Comparative

performance and economic appraisal of Holstein-Friesian, Jersey and Jersey�olstein-

Friesian cows under seasonal pasture-based management'. Irish Journal of Agricultural

and Food Research .

T. Sweeney, C. B. Collins, P. Reilly, K. M. Pierce, M. Ryan and J. V. ODoherty (2012)

'Effect of purified b-glucans derived from Laminaria digitata, Laminaria hyperborea and

Saccharomyces cerevisiae on piglet performance, selected bacterial populations, volatile

fatty acids and pro-inflammatory cytokines in the gastrointestinal tract of pigs'. British

Journal of Nutrition .

Whelan, S. J., K. M. Pierce, B. Flynn, and F. J. Mulligan (2012) 'Effect of

supplementary concentrate type on nitrogen partitioning in early lactation dairy cows

offered perennial ryegrass-based pasture'. Journal of Dairy Science, 95 :4468-4477.

Dr Gordon Purvis

Sheridan, H., McMahon, B.J., Carnus, T., Finn, J.A., Helden, A.J., Kinsella, A. &

Purvis, G. ; (2011) 'Pastoral farmland habitat diversity in south-east Ireland'.

Agriculture, Ecosystems and Environment, 144 :130-135.

Dr Matthew Saunders

Saunders, M., Kansiime, F., Jones, M; (2012) 'Agricultural encroachment: implications

for carbon sequestration in tropical African wetlands'. Global Change Biology .

Olajuyigbe, S., Tobin, B., Saunders, M., Nieuwenhuis, M (2012) 'Forest thinning and

soil respiration in a Sitka spruce forest in Ireland'. Agricultural and Forest Meteorology,

157 :86-95.

Saunders, M, Tobin, B, Black, K, Gioria, M, Nieuwenhuis, M, Osborne, B.; (2012)

'Thinning effects on the net ecosystem carbon exchange of a Sitka spruce forest are

temperature-dependent'. Agricultural and Forest Meteorology .

Dr Olaf Schmidt

Augustenborg CA, Hepp S, Kammann C, Hagan D, Schmidt O and Mller C; (2012)

'Biochar and earthworm effects on soil nitrous oxide and carbon dioxide emissions'.

Journal of Environmental Quality, 41 (4):1203-1209.

Zazzo A, Bendrey R, Vella D, Moloney AP, Monahan FJ, Schmidt O; (2012) 'A refined

sampling strategy for intra-tooth stable isotope analysis of mammalian enamel'.

Geochimica Et Cosmochimica Acta, 84 :1-13.

Keith, A.M., Boots, B., Hazard, C., Niechoj, R., Arroyo, J., Bending, G.D., Bolger, T.,

Breen, J., Clipson, N., Doohan, F.M., Griffin, C.T. and Schmidt, O. (2012) 'Cross-taxa

congruence, indicators and environmental drivers in soils under agricultural and

extensive land management'. European Journal of Soil Biology, 49:55-62 .

Stromberger ME, Keith AM, Schmidt O; (2012) 'Distinct microbial and faunal

communities and translocated carbon in Lumbricus terrestris drilospheres'. Soil Biology

and Biochemistry, 46 :155-162.

Boots, B., Keith, A.M., Niechoj, R., Breen, J., Schmidt, O. and Clipson, N. (2012)

'Unique soil microbial assemblages associated with grassland ant species with different

nesting and foraging strategies'. Pedobiologia, 55 (1):33-40.

Schmidt O, Dautel H, Newton J, Gray JS; (2011) 'Natural isotope signatures of host

blood are replicated in moulted ticks'. Ticks and Tick-borne Diseases, 2 (4):225-227.

Artuso N, Kennedy TF, Connery J, Grant J and Schmidt O; (2011) 'Assessment of

biosolids in earthworm choice tests with different species and soils'. Global NEST

Journal, 13 (3):255-265.

Zazzo, A., Monahan, F. J., Moloney, A. P., Green, S, Schmidt, O.; (2011) 'Sulphur

isotopes in animal hair track distance to sea'. Rapid Communications in Mass

Spectrometry, 25 (17):2371-2378.

Dr Helen Sheridan

McMahon, B.J., Anderson, A., Carnus, T., Helden, A.J., Kelly-Quinn, M., Maki, A.,

Sheridan, H., and Purvis, G. (2012) 'Different bioindicators measured at different spatial

scales vary in their response to agricultural intensity'. Ecological Indicators, 18:676-683

.

Sheridan, H., McMahon, B.J., Carnus, T., Finn, J.A., Helden, A.J., Kinsella, A. &

Purvis, G. ; (2011) 'Pastoral farmland habitat diversity in south-east Ireland'.

Agriculture, Ecosystems and Environment, 144 :130-135.

Dr Brian Tobin

Saunders, M., Tobin, B., Black, K., Niewuenhuis, M. and Osborne, B. (2012) 'Thinning

effects on the net ecosystem carbon exchange of a Sitka spruce forest are temperature-

dependent'. Agricultural and Forest Meteorology, 157:1-10 .

O Olajuyigbe, S., Tobin, B., Gardiner, P. and Nieuwenhuis, M. ; (2011) 'Stocks and

decay dynamics of above- and belowground coarse woody debris in managed Sitka

spruce forests in Ireland'. Forest Ecology and Management, 262 (6):1109-1118.

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Other Journals

Professor Maarten Nieuwenhuis

Nieuwenhuis, M. (2012) 'Forestry Training & Education Ireland (FTEI) - Development

of a Funded Forestry Training Programme' Forestry and Energy Review, 2 (1):46-47.

Harper, C. and Nieuwenhuis, M. (2012) 'INTEGRAL - Future-oriented integrated

management of European forest landscapes' Irish Timber and Forestry, 21 (1):18-19.

M. Nieuwenhuis; (2011) 'Training and Education Needs in the Forestry sector' Forestry

& Energy Review, 1 (2):38-39.

M. Nieuwenhuis and M. Doyle; (2011) 'UCD Forestry' Forestry & Energy Review, 1

(2):40-42.

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Conference Publications

Dr James Breen

Breen, J. P., Donnellan T. and Westhoff, P. (2012) Reducing Greenhouse Gas Emissions

from Irish agriculture: A market-based approach 28th Triennial Conference of the

International Association of Agricultural Economists,

Dr Nigel Patrick Brunton

Rawson A., Tiwari U., Brunton N., Valverde J., Tuohy M., Cummins E.; (2011) A

methodology to predict the pre-harvest and post-harvest level of polyacetylenes in

carrots 7th International Conference on Predictive Modelling of Food Quality and

Safety, Radisson Blu Royal Hotel, Golden Lane, Dublin, Ireland, 406

Dr Thomas Cummins

Cummins, Thomas, Louise Doherty and Sharon O'Rourke; (2011) Map of the Soils of

Urban Dublin 5th Annual Irish Earth Observation Symposium : Realising the potential

of Earth Observation for the national benefit, Johnstown Castle, Wexford,

Cummins, Thomas, Louise Doherty and Sharon O'Rourke; (2011) Map of the Soils of

Urban Dublin 5th Annual Irish Earth Observation Symposium : Realising the potential

of Earth Observation for the national benefit, Johnstown Castle, Wexford,

Doherty, Louise, Mamadou Diallo, Mel Dermody, Agnieszka Piwowarczyk, Sharon

O'Rourke and Thomas Cummins; (2011) Soils of Urban Dublin: First Approximation

5th Annual Irish Earth Observation Symposium : Realising the potential of Earth

Observation for the national benefit, Johnstown Castle, Wexford,

Dr Alan Fahey

Brady K.M., Corbally, A., Harty D., and Fahey A.G. (2012) The relationship between

genetic diversity and phenotypic characteristics in the Irish Draught horse EAAP

European Federation of Animal Science,

Fitzsimons, C., Kenny, D., Deighton, M., Fahey, A., and McGee M. (2012) Methane

Emissions and rumen fermentation in heifers differing in phenotypic residual feed intake

EAAP European Federation of Animal Science,

A.M. Doyle, R.D. Evans, and A.G. Fahey (2012) Analysis of twin births, calf stillbirths,

abortion, and calf death before 28 days of age in Irish Charolais and Limousin

populations American Society of Animal Science,

P.S. Agostini, A.G. Fahey, E.G. Manzanilla, J.V. O'Doherty, C. de Blas, and J. Casa

(2012) Managment and facility factors that affect mortality in grow-finishing pigs

American Society of Animal Science,

P.S. Agostini, A.G. Fahey, E.G. Manzanilla, J.V. O'Doherty, C. de Blas, and J. Casa

(2012) Housing and management factors that affect feed conversion ratio in grow-

finishing pigs American Society of Animal Science,

P.S. Agostini, A.G. Fahey, E.G. Manzanilla, J.V. O'Doherty, C. de Blas, and J. Casa

(2012) Management and facility factors that affect the variation of average daily gain in

grow-finishing pigs American Society of Animal Science,

C.R. Davis, E.W. Hill, and A.G. Fahey (2012) Influence of genomic predictors on

yearling sales price and total career earnings in Thoroughbred racehorses American

Society of Animal Science,

Dr John Fry

Gonz�z, Ainhoa; John Fry, Tamara Hochstrasser, Peter Carvill, Berna Grist and Paul

Scott (2012) Irish Guidance for Biodiversity Impact Assessment IAIA12, 'Energy

Future: The role of Impact Assessment' - the 31st Annual meeting of the International

Association for Impact Assessment, Porto, Portugal, 27 May - 1 June, 2012,

Dr Jean-Christophe Jacquier

G. O'Neill, J.C. Jacquier, M. O'Sullivan, E.D. O'Riordan; (2011) Encapsulation of amino

acids and peptides in cold set whey protein microspheres 2011 EFFoST Annual Meeting,

Berlin,

J. Newman, N. Harbourne, D. ORiordan, J.C. Jacquier, M. O'Sullivan; (2011)

Evaluation of bitterness in whey protein hydrolysates by an electronic tongue and

trained sensory panel 2011 EFFoST Annual Meeting, Berlin,

E. Duggan, N. Harbourne, J.C. Jacquier, M. O'Sullivan, D. O'Riordan; (2011)

Incorporation of whey protein hydrolysates into acidified milk gels 2011 EFFoST

Annual Meeting, Berlin,

J.-C. Jacquier, N. Harbourne, E. Marete, D. ORiordan; (2011) Predictive model for

bioactive stability during non-isothermal heat treatment and storage in beverages: Case

study of acidified feverfew beverages 7th International Conference on Predictive

Modelling of Food Quality and Safety ICPMF7,

Dr Barbara Murphy

Fonseca RG, Kenny DA, McGivney BA, Murphy BA, Hill EW, Katz LM; (2011) The

response of plasma myeloperoxidase concentrations to exercise and training in a group

of Thoroughbred flat racehorses over a two-year period of time French Equine

Veterinary Association (AVEF),

O.F. McGlynn, C.M.Blake, J.A. Browne, B.A. Murphy; (2011) TEMPORAL

DIFFERENCES IN CYTOKINE AND CLOCK GENE RESPONSES TO IMMUNE

STIMULATION IN EQUINE BLOOD NEUROSCIENCE IRELAND MEETING 2011,

Dr Aine Ni Dhubhain

Farrelly, N, Ni Dhubhain, A and Nieuwenhuis, M; (2011) Site, soil and climatic factors

and the productivity of Sitka spruce in Ireland . In: Farrelly, N eds. The role of site

classification in forest productivity and management, Athenry, Co. Galway, 64 - 82

Professor Maarten Nieuwenhuis

McCaffery, F and Nieuwenhuis, M; (2012) TREEMODEL: Single tree volume models

and tools to measure upper-stem diameters Forest growth assessment and modellingin

Ireland - state of the art, Dublin,

McCullagh, A. and Nieuwenhuis, M. (2012) STANDMODEL: Dynamic yield models

for Japanese larch, mixtures and broadleaves Forest growth assessment and modellingin

Ireland - state of the art, Dublin,

Farrelly, N, Ni Dhubhain, A and Nieuwenhuis, M; (2011) Site, soil and climatic factors

and the productivity of Sitka spruce in Ireland . In: Farrelly, N eds. The role of site

classification in forest productivity and management, Athenry, Co. Galway, 64 - 82

Dr Anne Nugent

Nugent AP (2012) Dietary whole grain intakes: a global perspective Whole Grain

Summit,

Professor Dolores O'Riordan

E. Duggan, N. Harbourne, J.C. Jacquier, M. O'Sullivan, D. O'Riordan (2011) ; (2011)

Incorporation of whey protein hydrolysates into acidified milk gels 2011 EFFoST

Annual Meeting Berlin, , 09-NOV-11 - 11-NOV-11,

J. Newman, N. Harbourne, D. ORiordan, J.C. Jacquier, M. O'Sullivan (2011); (2011)

Evaluation of bitterness in whey protein hydrolysates by an electronic tongue and

trained sensory panel 2011 EFFoST Annual Meeting Berlin, , 09-NOV-11 - 11-NOV-11,

.-C. Jacquier, N. Harbourne, E. Marete, D. ORiordan (2011); (2011) Predictive model

for bioactive stability during non-isothermal heat treatment and storage in beverages:

Case study of acidified feverfew beverages 7th International Conference on Predictive

Modelling of Food Quality and Safety ICPMF7 , 12-SEP-11 - 15-SEP-11,

Mr Mick O'Sullivan

G. O'Neill, J.C. Jacquier, M. O'Sullivan, E.D. O'Riordan ; (2011) Encapsulation of

amino acids and peptides in cold set whey protein microspheres 2011 EFFoST Annual

Meeting Berlin,

J. Newman, N. Harbourne, D. ORiordan, J.C. Jacquier, M. O'Sullivan ; (2011)

Evaluation of bitterness in whey protein hydrolysates by an electronic tongue and

trained sensory panel 2011 EFFoST Annual Meeting Berlin,

E. Duggan, N. Harbourne, J.C. Jacquier, M. O'Sullivan, D. O'Riordan; (2011)

Incorporation of whey protein hydrolysates into acidified milk gels 2011 EFFoST

Annual Meeting Berlin,

Dr Matthew Saunders

Nicolau, M. , Saunders, M., O'Neill, M., Brabazon, A. and Osborne, B. ; (2012)

Evolving Interpolating Models of Net Ecosystem CO2 Exchange Using Grammatical

Evolution 15th European Conference on Genetic Programming (EuroGP 2012),

Malaga, Spain, 134 - 145

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Published Reports

Dr John Fry

Gonz�z, A, T Hochstrasser, J Fry, P Scott, P Carvill, M Jones and B Grist (2012)

Integrated Biodiversity Impact Assessment: Best Practice Guidance Manual. Environmental

Protection Agency, Wexford, Ireland.

Dr Deirdre O'Connor

O'Connor, D. Lai, M. and Watson, S. ; (2011) Overview of Social Farming and Rural

Developoment Policy in Selected EU Member States. European Commission, Brussels.

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Other Publications

Dr Alan Hunter

Gallone, A., Hunter, A. and Douglas, G.C. 2011. (2011) Micropropagation , polyploidy

induction and y-irradiation of Hebe cultivars. Abstract.

Dr Anne Nugent

O'Mahony L, Stepien M, Gibney MJ, Nugent AP, Brennan L. (2011) The potential role

of vitamin D enhanced foods in improving vitamin D status. Articles.

Professor John O'Doherty

O'sullivan, J.T. and O'doherty, J. and Sweeney, T. and others (2012) THE

IMPROVEMENT OF GASTROINTESTINAL HEALTH, IMMUNITY AND

PERFORMANCE BY DIETARY INTERVENTION. .

Dr Conor O'Reilly

Schmal, J.L. and OReilly, C. (2012) Use of exponential nitrogen loading in the nursery

to promote nutrient uptake and quality of pedunculate oak seedlings. Articles.

Dr David Stead

Stead, D. R.; (2011) Review of A Living Countryside? The Politics of Sustainable

Development in Rural Ireland. Rural History, 22: 273-4: Book Reviews.

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