research data management - e-science-tage 2019: …...2017/03/17 · research data management step...
TRANSCRIPT
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Research Data Management Step by step through the Data Life Cycle
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slide 2
The Vision
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slide 3
Ecosystems Biology
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slide 4
The Marine Foodweb
DeLong et al., Nature, Vol. 437, 2005
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Ecosystems Biology
Essential
Biodiversity
Variables
Statistics
Models Predictions
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Marine Megasequencing Projects
OSD: blue stars, RSD: green dots, Tara Oceans: orange dots, Malaspina cruise: red dots,
Global Ocean Sampling (GOS): yellow dots.
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slide 7
Data Integration
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slide 8
The Reality
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slide 9
‘Abandoned’ sequences in INSDC databases
8% with coordinates (latitude/longitude)
9% with collection date
41% with taxonomic assignment Pelin Yilmaz
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slide 10
Big Data
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slide 11
Value of Research Data
2007
2010
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slide 12
2011
2014
Value of Research Data
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slide 13
http://www.wordle.net/
Summary
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slide 14
Reality
Graphic by Michael Diepenbroek (PANGAEA)
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slide 15
Dark Data (the long tail)
When asked, almost all scientists will quickly acknowledge that they are
holding dark data, data that has never been published or otherwise made
available to the rest of the scientific community. An example of dark data is the
type of data that exists only in the bottom left-hand desk drawer of scientists
on some media that is quickly aging and soon will be unreadable by commonly
available devices. The data remains in this dark desk drawer, inaccessible to
the scientific community until the scientist retires. At the point of retirement
some scientists rush to find a more suitable home for their data, be they in the
form of slides, photographs, specimens, or electronic media files. More often
than not, even in a well-planned retirement the desk drawer is eventually
emptied into a dumpster because no one, including the scientist, knows
exactly what the data is since it lacks adequate documentation.
B. P. Heidorn Libr. Trends 57, 280–299; 2008
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slide 16
Dark Data (the long tail)
20% by number of grants 80% by number of grants
B. P. Heidorn Libr. Trends 57, 280–299; 2008
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slide 17
Availability of Research Data with Time
Vines, Timothy H. et al. Current Biology , 2014, Volume 24 , Issue 1 , 94 - 97
Odds of data being lost are
estimated to increase by 17%
in every year after
publication.
Find a working e-mail
address for the first, last, or
corresponding author fell by
7% per year.
Overall, we only received
19.5% of the requested data
sets, and only 11% for
articles published before
2000.
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The Solution?
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slide 19
FAIR Data Findable, Accessible, Interoperable, Re-usable
http://www.nature.com/articles/sdata201618
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slide 20
FAIR Principles
http://www.nature.com/articles/sdata201618
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slide 21
Data Life Cycle
Propose
Collect data
Assure quality
Describe
Publish data
Preserve
Discover
Integrate
Analyze
Publish article
FAIR Data Findable, Accessible,
Interoperable, Re-usable
www.nature.com/articles/sdata201618
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slide 22
Data Life Cycle
Propose
Collect data
Assure quality
Describe
Publish data
Preserve
Discover
Integrate
Analyze
Publish article
FAIR Data Findable, Accessible,
Interoperable, Re-usable
www.nature.com/articles/sdata201618
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slide 23
Incentives
• Making data available is an essential part of the research process – It must be in the culture – the norm
• Career – Visibility – more citations
– Credibility – more credits
– Exchange – improve accessibility
• Standards
• Financial and legal framework
• Expectation “policy” by funders and publishers
•Adequate support and infrastructures
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slide 24
Example USA/NSF
http://www.nsf.gov/bfa/dias/policy/dmp.jsp http://www.nsf.gov/bio/pubs/BIODMP_Guidance.pdf
October 2015
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slide 25
Example Netherlands
http://www.nwo.nl/en/policies/open+science/data+management
FAIR Data
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slide 26
Example EU H2020
http://ec.europa.eu/research/participants/docs/h2020-funding-guide/cross-cutting-issues/open-access-data-
management/open-access_en.htm
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slide 27
Example DFG – DMP
http://www.dfg.de/download/pdf/foerderung/antragstellung/forschungsdaten/guidelines_biodiversity_research.pdf
FAIR Data
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slide 28
Example DFG – DMP
http://www.dfg.de/download/pdf/foerderung/antragstellung/forschungsdaten/guidelines_biodiversity_research.pdf
FAIR Data
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slide 29
Incentives
• Making data available is an essential part of the research process – It must be in the culture – the norm
• Career – Visibility – more citations
– Credibility – more credits
– Exchange – improve accessibility
• Standards/SOPs
• Financial and legal framework
• Expectation “policy” by funders and publishers
• Adequate support and infrastructures
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slide 30
German Federation for Biological Data
Funded by
www.gfbio.org
Sustainable, service oriented,
national data infrastructure
facilitating data sharing for biological
and environmental research.
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slide 31
• Single point of contact for:
– Data management
– Long-term data archival
– Integrated data discovery
– Visualization and analyses
• Helpdesk
• Support & Training
GFBio Services
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slide 32
Should cover the following points:
• Data acquisition (size, type)
• Quality assurance, standards
• Intermediate handling and storage
• Long-term archiving (data centers)
• Analysis (tools)
• Publication (open-access)
Data Management Plan
Contact us [email protected]
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slide 33
Long-term Data Archival
GFBio data centers and their services at a glance
• Collection data
• Environmental data
• Molecular data
http://www.gfbio.org/data-centers
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slide 34
Environmental Data PANGAEA
• Hosted by the MARUM - Center for Marine Environmental Sciences (Bremen) & Alfred Wegener Institute for Polar and Marine Research, Bremerhaven
• Since 1993 - Information system for long-term archiving and publication of data from earth & environmental science
• Large range of different environment related data e.g.
– Environmental time series
– Photos, movies
– Sediment samples
– Biodiversity
– many more.....
Total number of data sets ~ 350.000 Data items ~ 10 billions
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slide 35
Environmental Data PANGAEA
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slide 36
Molecular Data Brokerage
What we offer: – Standardization of
molecular metadata according to the MIxS1 standard
–Manual input and template download/upload
– Linking of persistent identifiers across data centers (ENA + PANGAEA)
1 http://www.gensc.org/mixs
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slide 37
Sustainability
Basic operations/maintenance
Developments User involvement
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slide 38
Transition
“Research” project with 20 partners project funding
Single legal entity sustainable business model
e.V.
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slide 39
• GFBio e.V. is the legal entity
• Founded on 31.05.2016
• 11 founding members (10 persons and GWDG) – 1. Chairman: Michael Diepenbroek
– 2. Chairman: Birgitta König-Ries
– Treasurer: Frank Oliver Glöckner
– 1. Assessor: Dagmar Triebel
– 2. Assessor: Anton Güntsch
GFBio e.V.
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slide 40
The Costs?
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slide 41
Value of Access to Data
http://www.ands.org.au/working-with-data/articulating-the-value-of-open-data/open-research-data-report
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slide 42
Costs of Data Loss
Type of loss Average cost of each data
loss incident
Technical service $ 340
Loss of productivity $ 217
Value of the lost data $ 3400
Sub total $ 3957
Episodes of data loss 4,607,100
Total US data loss costs $ 18.2 billion = € 17.1 billion
David M. Smith, Graziado Business Review 2003 Volume 6 Issue 3
Data stored on 76.2 million PCs (USA)
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slide 43
RDM Costs
6.76 Billion Euro third party funding in 2012 427 Universities in Germany
5-15% is needed for Research Data Management
338 – 1014 Million Euro
http://www.dfg.de/service/presse/pressemitteilungen/2015/pressemitteilung_nr_43
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slide 45
Thanks to...
GFBio
GFBio e.V.
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slide 46
Thanks for your attention