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Resistance Mechanisms, Epidemiology, and Approaches to Screeningfor Vancomycin-Resistant Enterococcus in the Health Care Setting
Matthew L. Faron,a Nathan A. Ledeboer,a,b Blake W. Buchana,b
Medical College of Wisconsin, Milwaukee, Wisconsin, USAa; Wisconsin Diagnostic Laboratories, Milwaukee, Wisconsin, USAb
Infections attributable to vancomycin-resistant Enterococcus (VRE) strains have become increasingly prevalent over the pastdecade. Prompt identification of colonized patients combined with effective multifaceted infection control practices can reducethe transmission of VRE and aid in the prevention of hospital-acquired infections (HAIs). Increasingly, the clinical microbiologylaboratory is being asked to support infection control efforts through the early identification of potential patient or environmen-tal reservoirs. This review discusses the factors that contribute to the rise of VRE as an important health care-associated patho-gen, the utility of laboratory screening and various infection control strategies, and the available laboratory methods to identifyVRE in clinical specimens.
Hospital-acquired infections (HAIs) are a serious threat forpatient care and carry a significant cost to hospitals, since
treatment of these infections is no longer reimbursable. In addi-tion, regulations requiring hospitals to report HAIs creates furtherpressure to reduce incidence rates. Screening patients at admis-sion for methicillin-resistant Staphylococcus aureus (MRSA) hasbeen a successful approach in reducing MRSA HAIs in somehealth care systems and may be a successful strategy for control-ling other health care-associated pathogens, including Clostrid-ium difficile, carbapenem-resistant Enterobacteriaceae (CRE), andvancomycin-resistant Enterococcus (VRE) (1). However, there isdebate about the optimal approach to screening and infectioncontrol, which may differ between pathogens of interest.
Members of the genus Enterococcus are well-documentedpathogens associated with various clinical manifestations, includ-ing bacteremia, infective endocarditis, intra-abdominal and pelvicinfections, urinary tract infections, and, in rare cases, central ner-vous system infections (2–4). Infection with vancomycin-resis-tant Enterococcus is associated with an increased mortality rate,illustrated by a 2.5-fold increase in mortality for patients sufferingfrom VRE bacteremia (5). Vancomycin resistance in Enterococcusspp. has been increasing in prevalence since it was first encoun-tered in 1986 (6, 7). Currently, 30% of Enterococcus species isolatesfrom the United States are vancomycin resistant, and infectionwith these organisms causes an estimated 1,300 deaths each year(8). The majority of VRE are associated with the species E. faecium(77%) and E. faecalis (9%), with the remaining 14% of isolatesrepresenting species less frequently implicated in serious infec-tions, including E. gallinarum, E. casseliflavus, E. avium, and E.raffinosus (8).
The optimal approach to reducing VRE infections is multifac-torial, requiring antimicrobial stewardship to reduce the selectionof VRE in colonized patients, appropriate infection control prac-tices to reduce transmission, and reliable sensitive laboratorymethods for the detection of VRE in a timely manner.
ANTIMICROBIAL RESISTANCE MECHANISMS ANDAPPROACHES TO THERAPY
Understanding the mechanism behind resistance is essential toreducing empirical antibiotic therapies that select resistant patho-gens. Elimination of normal gut flora by commonly used broad-
spectrum antibiotics (vancomycin, cephalosporins, and metroni-dazole) encourages the selective proliferation of VRE (9). Thisincreases the likelihood of resulting infections with these bacteriaor leaves patients more susceptible to colonization by resistantstrains encountered in the environment or health care setting.Treatment of infections due to Enterococcus spp. can be challeng-ing, since enterococci are intrinsically resistant to several classes ofantibiotics, including �-lactams and aminoglycosides, and can ac-quire resistance to other classes, including quinolones, tetracy-clines, and glycopeptides (e.g., vancomycin). Resistance to glyco-peptides may be encoded chromosomally or extrachromosomallyon plasmids. Often, these genes are located within transposons orother mobile elements, which can serve as a reservoir for the trans-mission of resistance to other organisms (10). The choice of ther-apy for infections due to Enterococcus spp. depends largely on thesite of infection (e.g., urinary versus nonurinary) and the antimi-crobial susceptibility profile of the isolate. In some scenarios, suchas infective endocarditis, multiple antibiotics may be used toachieve a synergistic effect. This may include antibiotics to whichthe organism is considered intrinsically resistant, such as genta-micin or ceftriaxone, when used singly (11). Therefore, combina-tion therapy requires an understanding of the intrinsic and ac-quired resistance mechanisms that contribute to therapy successor failure.
Aminoglycoside resistance. Enterococcus spp. may demon-strate moderate-level (MIC, 62 to 500 �g/ml) or high-level (MIC,�2,000 �g/ml) resistance (HLR) to aminoglycosides (12). Mod-erate resistance is conferred by an intrinsic mechanism attributedto low permeability of the cell wall to the large aminoglycosidemolecules (13). A study including 2,507 E. faecalis and 469 E.faecium isolates from clinical specimens in France found the prev-
Accepted manuscript posted online 4 May 2016
Citation Faron ML, Ledeboer NA, Buchan BW. 2016. Resistance mechanisms,epidemiology, and approaches to screening for vancomycin-resistantEnterococcus in the health care setting. J Clin Microbiol 54:2436 –2447.doi:10.1128/JCM.00211-16.
Editor: C. S. Kraft, Emory University
Address correspondence to Blake W. Buchan, [email protected].
Copyright © 2016, American Society for Microbiology. All Rights Reserved.
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alence of moderate resistance to be 8.9% and 49.2%, respectively(14). HLR to aminoglycosides is mediated through modificationof the ribosomal attachment sites or the production of aminogly-coside-modifying enzymes (12). Both mechanisms are encodedby specific genes and are typically plasmid borne. The prevalenceof HLR to aminoglycosides can vary from 40 to 68% among En-terococcus species isolates, depending on geographical location,and differs between E. faecalis and E. faecium (15, 16). Intrinsicresistance may be overcome using a combination treatment with a�-lactam and an aminoglycoside, also referred to as a synergytherapy approach. Synergy therapy is based on the principle that�-lactams will disrupt the cell wall, thereby facilitating increasedcellular penetration by the aminoglycoside to reach a concentra-tion sufficient for the inhibition of protein synthesis. This ap-proach is effective in treating infections caused by organisms withmoderate-level resistance to aminoglycosides; however, synergy islost in strains with HLR to aminoglycosides, because the increasein intracellular aminoglycoside concentration cannot overcomethe presence of specific aminoglycoside-modifying enzymes.Therefore, accurate differentiation between the moderate-levelresistance (MLR) and HLR phenotypes is important when consid-ering synergistic antibiotic therapies for serious infections (17).Laboratories can determine HLR by performing a high-level ami-noglycoside test according to the CLSI guidelines.
�-Lactam resistance. Intrinsic resistance to �-lactams ismaintained in enterococci through the overproduction of penicil-lin binding proteins (PBPs) with low binding affinity for �-lac-tams, most notably PBP 4 and PBP 5 (18–21). The level of resis-tance differs between E. faecalis and E. faecium, with E. faecalisbeing 10- to 100-fold less susceptible to penicillin than strepto-cocci and E. faecium being at least 4- to 16-fold less susceptiblethan E. faecalis (22). Despite reduced susceptibility to penicillin,the majority of E. faecalis isolates (�99%) remain susceptible toampicillin, while �20% of E. faecium isolates demonstrate ampi-cillin susceptibility (23). Importantly, neither penicillin nor ampi-cillin susceptibility is indicative of susceptibility to cephalosporins.For patients who are aminoglycoside intolerant, combination treat-ment with ampicillin and ceftriaxone was observed to be as effec-tive as ampicillin and gentamicin in treating VRE with the genta-micin HLR phenotype (24). These therapies are most useful intreating severe infections, such as endocarditis and meningitis(25).
Glycopeptide resistance. Glycoproteins are bactericidal drugsthat function by binding to the terminal D-Ala-D-Ala in the pen-tapeptide portion of the N-acetylglucosamine (NAG)–N-acetyl-muramic acid (NAM) peptidoglycan (PG) cell wall precursor (Fig.1). Binding blocks transpeptide linkage of cell wall components,resulting in reduced integrity and, ultimately, cell death. Resis-tance to glycopeptides in Enterococcus spp. is mediated by the van-comycin resistance (Van) operon. This operon may be carriedchromosomally or extrachromosomally on a plasmid. The Vanoperon consists of vanS-vanR, a response regulator; vanH, a D-lac-tate dehydrogenase gene, vanX, a D-Ala-D-Ala dipeptidase gene;and a variable ligase in which 9 variant genes have been identified(vanA, vanB, vanC, vanD, vanE, vanG, vanL, vanM, and vanN)(26). Expression is inducible by the two-component systemVanS/R, which senses disruptions in the cellular membranecaused by glycopeptides, as well as cell wall damage caused bybacitracin or polymyxin B (27). The variable ligase gene is centralin determining the level of vancomycin resistance (low, medium,
or high), with the most commonly identified genes being vanA,vanB, and vanC. VanA is plasmid borne, confers high-level resis-tance (MIC, �256 �g/ml) to vancomycin, and is most commonlyassociated with E. faecium and E. faecalis, while chromosomallyencoded VanC confers low-level resistance (MIC, 8 to 32 �g/ml)to vancomycin and is almost exclusively found in E. gallinarum, E.casseliflavus, and E. flavescens (11).
VanA resistance. Enterococcus spp. carrying vanA are highlyresistant to glycopeptides and are the dominant VRE variants of E.faecium and E. faecalis globally. Resistance is mediated by substi-tuting the high-affinity terminal D-Ala-D-Ala peptide on NAMsubunits with D-Ala-D-Lac. This amino acid substitution causes a1,000-fold decrease in the affinity of the pentapeptide for vanco-mycin (Fig. 1) (11). Incorporation of NAM subunits containingthe substituted D-Ala-D-Lac peptide into the peptidoglycan layerrequires PBPs other than PBP 4 and PBP 5. In the presence ofvancomycin, these alternative PBPs become the dominant pro-teins for cell wall synthesis. The alternative PBPs used during thepresence of vancomycin have enhanced binding to �-lactams,which when used together can allow synergistic treatment (28).VanA-expressing strains are also resistant to the glycopeptide tei-coplanin (Te) due to the presence of an additional gene present onthe vanA operon, vanZ, which confers resistance by an unknownmechanism (29).
VanB resistance. Isolates carrying vanB are less prevalent thanvanA-carrying strains but can be found throughout the world andare commonly identified in Australia, where the majority of E.faecium VRE isolates carry vanB (30, 31). As with to vanA, resis-tance in vanB is mediated by converting D-Ala-D-Ala to D-Ala-D-Lac (11). However, vanB confers varied resistance to vancomycin,ranging from moderate- to high-level resistance (MIC range, 4 to�256 �g/ml) (11). The mechanism for the lower-level resistancecompared to that of vanA is not well defined but is likely the resultof a lower proportion of D-Ala-D-Lac substitution in the cell wallof strains carrying vanB. Resistance to vancomycin is proportionalto the percent composition of D-Ala-D-Lac to D-Ala-D-Ala (32).Smaller amounts of D-Ala-D-Lac incorporation might result fromreduced expression of the vanB operon, a reduction in VanX orVanB enzymatic activity, or a combination of minor mechanisticchanges. Te resistance is not observed in vanB-carrying isolates, asvanZ is not encoded in this operon.
Risk of vancomycin resistance transmission to other patho-gens. Vancomycin is one of the few antibiotics that can be used totreat infections resulting from Gram-positive multidrug-resistantorganisms (MDRO), such as MRSA; therefore, transmission ofvancomycin resistance from enterococci to MRSA is of major con-cern. Horizontal gene transfer has been shown to be a mechanismof transmission between enterococci, and in vitro studies havedemonstrated that transfer between Enterococcus and S. aureus canoccur (33). In 2002, the first case of vancomycin-resistant S. au-reus (VRSA) was isolated from a 40-year-old diabetic patient un-dergoing dialysis and was obtained from a dialysis catheter cul-tured from both the exit site and catheter tip. A week later, theVRSA isolate was isolated from a diabetic foot ulcer. MIC testingand DNA sequence analysis conducted by the CDC confirmed theisolate as VRSA (34). To date, 14 cases of VRSA have been re-ported in the United States; however, the presumably frequentinteraction between VRE and MRSA (cocultured, with the twoorganisms recovered from the same source) and rare incidence ofVRSA isolation suggest that in vivo transfer of vancomycin resis-
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tance between these species occurs at an extremely low frequency(35). If a laboratory expects a potential VRSA isolate (vancomycinMIC, �16 �g/ml), local infection control at the hospital should benotified of the possible result, and the laboratory should workwith local and state departments of public health to have the iso-late tested for confirmation.
Horizontal gene transfer of the van operon between Enterococ-cus spp. and other organisms also appears to occur at a very lowfrequency. In a study that performed mating experiments betweenEnterococcus species and Gram-positive gut flora (Lactococcus spp.and Bifidobacterium spp.), no transfer of vanA between genera wasobserved (36). Interestingly, the authors observed that interspe-cies transmission within the Enterococcus genus, e.g., E. faecium toE. faecalis, occurred at a much lower frequency (1/108 per donor/
recipient) than intraspecies transmission (1/106 per donor/recip-ient). This may explain the higher prevalence of vanA within E.faecium isolates, as transmission occurs between E. faecium iso-lates, but not between E. faecium and other Enterococcus species, athigh frequencies. Infection control and antimicrobial stewardshipprograms that aim to reduce acquisition (i.e., colonization and/orinfection) of VRE and MRSA infections may aid in reducing thepossible transmission of glycopeptide resistance to S. aureus byminimizing coinfection with VRE and MRSA.
ENTEROCOCCUS SPP. IN THE HEALTH CARE SETTINGEpidemiology. Enterococcus spp. are normal colonizers of the hu-man gastrointestinal (GI) tract but can be recovered from the skin,genitourinary (GU) tract, and the oral cavity. Surveillance studies
FIG 1 Vancomycin acts by binding to D-Ala-D-Ala pentapeptides blocking cell wall biosynthesis. Resistance to vancomycin is conferred by the van operon, whichconsists of a two-component regulatory system (vanS-vanR) that responds to either vancomycin, disruption at the cell membrane, or both. Detection of stimulusthen activates downstream genes vanH, vanA or vanB and vanX. VanX is a D,D-dipeptidase that cleaves D-Ala-D-Ala repeats, both depleting the pool ofD-Ala-D-Ala and supplying the bacteria with a free D-Ala for Van(A/B). VanH is a D-hydroxyacid dehydrogenase that reduces pyruvate to D-Lac for the ligaseVan(A/B). Van(A/B) then ligates D-Ala-D-Lac, allowing for the production of D-Ala-D-Lac pentapeptides that have low affinity for vancomycin. In addition,VanY is a D,D-carboxypeptidase that cleaves the D-Ala terminal peptide to further reduce pools of pentapeptides that have high affinity to vancomycin. Finally,VanZ, which is present on vanA-carrying strains, confers modest resistance to teicoplanin through an unknown mechanism. Differences in the level of resistanceare likely a result of pentapeptide composition, as the ratio between pentapeptides consisting of high affinity to low affinity to vancomycin correlate with theisolate MICs. High-level resistance (HLR) occurs when pentapeptides are mostly composed of low-affinity molecules, and moderate-level resistance (MLR)involves more-heterogeneous pools of high- and low-affinity pentapeptides.
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conducted by the European Antimicrobial Resistance SurveillanceSystem and National Healthcare Safety Network (NHSN) reportvaried rates of colonization, depending on geographical locationand immune status of the patient population. Generally speaking,colonization rates for inpatients range from as low as �2% inFinland to as high as 34% in Ireland and 33% in intensive care unit(ICU) patients in the United States (37). Asymptomatic coloniza-tion is typically transient but can persist from months to years;decolonization is not recommended, since it can contribute to theaccelerated development of resistance (38). Colonized patients area potential risk to health care facilities, serving as a source of fortransmission via shedding of VRE into the surrounding environ-ment and onto health care workers (11, 39).
Hospital rooms housing patients infected or colonized withVRE are quickly contaminated and can also serve as a reservoir fortransmission. Environmental sampling studies have isolated VREfrom most surfaces found in rooms that previously housed in-fected patients, such as patient gowns, bedside rails, floors, door-knobs, and blood pressure cuffs (12). Enterococcus has been shownto persist for as long as 4 months on surfaces, and in a clinicalsetting, VRE was shown to persist through an average of 2.8 stan-dard room cleanings, thereby acting as a continual source for pos-sible transmission (40, 41). Recent studies involving environmen-tal surveillance suggest that admission to a room previouslyoccupied by a patient with VRE infection was associated with asignificant increased risk for VRE acquisition by subsequent pa-tients (hazard ratio, 4.4) (42).
Health care workers may also serve as vectors for the transmis-sion of VRE between patients in different rooms or wards. With-out proper hand hygiene, VRE can persist for up to 60 min on ahealth care worker (HCW)’s skin (11). Once hands are contami-nated, hand hygiene plays a major role in reducing transmissionrates; however, compliance is generally low. In a systematic reviewfrom 2010 to 2014 of several hand hygiene intervention studies, itwas found that compliance ranged from 23 to 69% (43). Further-more, it is important to educate HCWs about the possibility ofcontact with environmental services to ensure understanding thathand contamination can occur without specific contact with thepatient, and precaution should be applied even in the absence ofpatient interaction.
APPROACHES TO SCREENING AND IMPACT FOR CONTROLOF VRE
Both the CDC and the Society for Healthcare Epidemiology ofAmerica (SHEA) have released guidelines that recommend activescreening of patients for VRE colonization in hospitals and long-term-care facilities (44–46); however, many hospitals have notincorporated these recommendations. This is likely the result oflimited evidence from outcome studies demonstrating significantbenefit from laboratory screening for VRE and a lack of evidencesuggesting which patients should be screened to maximize thecost-to-benefit ratio. Accumulating evidence highlights severalspecific risk factors that can be used to determine which patientsare at highest risk and may benefit from screening efforts. The riskfactors include length of hospital stay, recent or current use ofantibiotics, patients whom are immunosuppressed, patients withprior hospital visits, and patients transferred from long-term-carefacilities (47).
Passive or active screening. Guidelines to control MDRO bythe CDC recommend that all hospitals adopt active rather than
passive screening approaches. In the case of VRE, passive screen-ing refers to the detection of VRE from clinical specimens submit-ted for routine culture (i.e., not specifically submitted for detec-tion of VRE). Patients are only isolated after laboratory detection(culture or molecular) or if previously positive for VRE on a prioradmission. Because the ratio of VRE-infected to -colonized pa-tients is 1:10, a passive screening approach may not adequatelyidentify a sufficient proportion of colonized patients to effectivelyreduce VRE transmission (12). Modeling of screening strategiesusing data from a 10-bed ICU at the University of Maryland Med-ical Center estimated that passive screening would reduce VREinfection by only 4.2% compared with no screening or isolationpractices (48).
Active screening is less well defined but can include the collec-tion of specimens specifically for VRE screening or screening ofstools collected for other purposes (e.g., for C. difficile testing).There are no specific recommended practices, but studies report-ing on the utility of screening often include testing upon hospitaladmission for patients with specific risk factors (e.g., those whoare immunosuppressed or have a history of broad-spectrum anti-biotic usage) and patients received from long-term-care facilities.Additionally, continued periodic screening 1 to 2 times a weekduring hospital admission and a screen at discharge may be em-ployed. In hospitals that do not perform specific screening forVRE colonization, reflex testing of C. difficile specimens for VREcan help determine the relative prevalence of VRE colonization ina patient population and can aid in early detection of outbreaks(49). Routine screening of patients at admission is effective inhospital settings with higher prevalence, but the cost of intensivescreening may not be justified in hospitals with a low prevalence ofVRE or in hospitals without high-risk patient populations. Imple-mentation of active screening for all ICU patients at admissionmay reduce VRE infections by up to 39% compared with noscreening (48). Another approach to reducing the spread of VREwithin the hospital setting is to cohort patients by VRE coloniza-tion status, as determined by laboratory screening result, and ded-icate specific HCWs to each cohort. This method may be difficult tocoordinate, requires adequate hospital beds for cohorting, and islikely not practical for the majority of hospitals; however, reducedHCW contact between colonized and noncolonized patients has thepotential to reduce the spread of VRE in the hospital (50).
Outcome studies of active screening. Estimating the real-world effect and benefits gained by implementation of routinescreening strategies can be difficult, and clinical outcome studiesare not without limitations. A lack of proper case controls or im-plementation of multiple variables at one time to provide optimalpatient care may obscure the independent contribution of anysingle screening or infection control measure. In addition, resultsmay be dependent upon site-specific factors, such as organismprevalence and compliance of HCWs, which vary from facility tofacility. Further, infection control practices often differ betweenstudies, and the materials and methods may not be adequate togenerate optimal comparisons across studies. A summary of sev-eral studies that performed analyses of active screening is pre-sented in Table 1.
Several studies have shown that active surveillance of stool orrectal swabs has a positive effect in reducing the burden of VREand related infections in hospitals. A retrospective comparisonbetween two urban hospitals in the United States demonstrated a2.1-fold lower rate of VRE bacteremia in the hospital performing
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ICU
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weekly active surveillance on all inpatients (51). Strain typing of allbloodstream infection (BSI) isolates revealed that 4 clones wereresponsible for more than 75% of all Enterococcus species BSI atthe hospital that did not actively screen for VRE, compared to 37%at the hospital with active screening. These data suggest that hos-pital transmission may be significantly more frequent at hospitalsthat are unaware of patient colonization status. Similarly, imple-mentation of routine screening of stool specimens coupled withhand hygiene and barrier protection for positive patients (in ac-cordance with 2003 SHEA guidelines) reduced the rate of patientcolonization by more than 80% (1.2% versus 0.17%) in just 3years (52). A comparable reduction in VRE colonization wasachieved by combining active screening and hand hygiene withtracking of previous carriers and environmental cleaning of colo-nized patients’ rooms after discharge (53). Following implemen-tation of this bundle strategy, the rate of VRE detection reducedfrom 1.5 to 0.5 per 1,000 admissions.
Counter to studies demonstrating measureable benefit, thereare also reports in the literature that suggest that active screeningof patients does not reduce the prevalence of VRE in a health caresetting. One cluster randomized trial included multiple hospitalICUs across the United States. Screening for VRE was on all ad-missions, and ICUs were randomly assigned to one of two groups,(i) an intervention group (n � 10), which was given the result ofscreening and implemented barrier precautions for positive pa-tients; or (ii) a control group (n � 8), which was blinded to thescreening result and so no intervention was implemented (54).After adjustment for baseline characteristics, the incidence of col-onization was not significantly different between the interventionand control groups (40.4 3.3 and 35.6 3.7, respectively, P �0.35). Unfortunately, this study had several limiting factors, in-cluding a 3-day delay between the collection of specimens andreporting of results. This delay may reduce the impact of interven-tional practices, since VRE transmission from colonized patientsmay have occurred in the 3 days prior to the implementation ofbarrier precautions. In addition, adherence to barrier precautionswas monitored and found to be suboptimal, with a median of 77to 82% of HCWs using gloves or gowns, and only 69% compliancewith hand hygiene after contact with colonized patients. Com-bined, these factors may have contributed to decreasing the po-tential impact of screening and infection control efforts. Impor-tantly, this highlights the real-world difficulty in implementing aneffective screening and infection control program and under-scores the fact that laboratory screening alone is insufficient tosignificantly impact the rate of HAIs.
Cost analysis of active screening. Active screening for VREcan carry a substantial monetary burden for the laboratory, in-cluding the cost of materials and labor, that may be difficult topredict prior to implementation. The total cost of screening isdependent upon several factors, including the patient populationthat is screened (hospital wide versus select ICU populations), themethod of screening (culture based versus molecular) and otherfactors, including the potential for automation. One laboratorysupporting a 19-bed ICU performing rectal swabs on all patientsat admission, weekly during hospital stay, and at discharge deter-mined that the active screening cost to their laboratory was $30.66per patient or $22,956 per year ($29,570 in 2015 using the Con-sumer Price Index), inclusive of labor, laboratory supplies for cul-ture, specimen collection supplies, and processing costs (55). Im-plementation of additional infection control practices based on a
positive screen result increases the overall cost to the hospital aswell. In one study, this cost was estimated at $116,515 ($224/pa-tient) annually for additional infection control measures in a 22-bed adult oncology unit (56). However, implementation of thisprogram resulted in a net savings of $189,318 annually ($294,433in 2015), based on a reduction in VRE BSI from 2.1/1,000 patient-days to 0.45/1,000 patient-days (estimated $123,081), reducedVRE colonization (estimated $2,755), and reductions in antimi-crobial use (estimated $179,997). Compared with the previousreports, active screening alone is cost-effective if it reduces 1 to 2VRE BSI events a year, whereas larger infection control programsmay need to prevent multiple infections a year to be cost-effective.Long-term costs of specialized chromogenic VRE screening mediacan be offset if the laboratory adopts automated systems that canplate, incubate, and analyze media by reducing the cost of tech-nologists’ time (57).
LABORATORY CONSIDERATIONS FOR VRE SCREENINGOptimal specimen collection. When screening patients for a spe-cific pathogen, it is essential that the optimal specimen is collectedto achieve maximum sensitivity. The CDC recommends screeningfor VRE using either rectal swabs or stool specimens. The use ofstool specimens submitted to the laboratory for C. difficile detec-tion provides a noninvasive specimen and targets patients withfactors that also predispose them to a higher VRE colonizationrate. In one study, stools submitted for C. difficile testing had aVRE positivity rate of 10.4%, compared with 9.7% positivity forrectal swabs collected from high-risk (e.g., bone marrow and solidorgan transplant and surgical ICU) patients based on culture us-ing selective media (58). Other studies suggest that stool speci-mens may be superior to rectal swab specimens for recovery ofVRE. A direct comparison of paired stool specimens and rectalswabs cultured using Enterococcosel agar (BD, Franklin Lakes,NJ) demonstrated a sensitivity of only 58% for rectal swab speci-mens compared to stool specimens (59). Enrollment for this studywas low (n � 35 positive specimens), but additional dilution ex-periments found that rectal swabs collected from patients with�4.5 log10 CFU of VRE/g of stool were unlikely to be detected byplating to selective media. Although potentially more sensitive,the clinical significance of these findings is unknown, since therehave been no studies establishing the relative risk of transmissionby patients harboring lower concentrations of VRE.
Culture-based screening methods. Laboratories that chooseto offer screening for VRE need to consider test sensitivity, com-plexity, turnaround time, and cost. Chromogenic agars are rela-tively inexpensive and provide a valuable tool for the laboratory.These agars and have been successfully used to screen for MRSAcolonization as a component of infection prevention efforts (60,61). Several VRE chromogenic agars that can identify VRE fromstool specimens are currently FDA cleared and commerciallyavailable. These media may also differentiate between E. faeciumand E. faecalis. In general, chromogenic agars have superior sen-sitivity, ranging from 90 to 99%, compared to bile esculin azideagar containing vancomycin (BEAV), which is approximately85% sensitive (62, 63). The specificity of chromogenic agars is alsosuperior to BEAV, which can be as low as 70 to 75%. A summaryof the performance of these agars can be found in Table 2 (62–68).False-positive results due to breakthrough growth of non-E. faeca-lis, non-E. faecium isolates are less common on chromogenic me-dia than on BEAV, which frequently supports the growth E. cas-
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seliflavus, E. gallinarum, Leuconostoc spp., and Pediococcus species.These species harbor low-level vancomycin resistance and are alsoesculin positive, making them difficult to distinguish from E.faecalis and E. faecium. In a study comparing 5 chromogenic agars,non-VRE isolates were recovered from 16.5% of specimens usingBEAV, whereas isolation of non-VRE organisms on chromogenicagar ranged from 0.9% to 5.6% of the specimens tested (62). Thesedifferences are likely due to the lower concentration of vancomy-cin used by BEAV, 6 �g/ml, versus 8 to 10 �g/ml used in chromo-genic media, as well as the specific colony color imparted by thechromogens used. While more sensitive than BEAV, chromogenicagar still requires 18 to 24 h of incubation, which can delay theimplementation of infection control measures.
Molecular screening methods. Nucleic acid amplificationtests (NAATs) have been applied tor VRE screening and detectionusing both stool and rectal swab specimens. Among these assaysare both laboratory-developed tests (LDTs) and commercially de-veloped assays, such as the Roche LightCycler VRE (vanA andvanB) detection assay, the Cepheid Xpert vanA and vanB assay,and the Cepheid Xpert vanA assay. The Cepheid Xpert vanA assayis FDA cleared, and the Xpert vanA and vanB assay is CE marked.Currently, the Roche LightCycler VRE detection kit is marketed asresearch use only (RUO).
The performance of molecular assays is varied, with sensitivityranging from 61.5 to 100% and specificity ranging from 14.7 to99.5% (69, 70). The wide difference in assay performance is due toseveral factors, including the gold-standard method used for cul-ture comparison and the prevalence of VRE in the study popula-tion. The Roche LightCycler VRE detection kit demonstrated ahigh negative predictive value (NPV) of 99.9% for VRE but suf-fered low positive predictive values (PPV) of 1.4% for vanB and68.5% vanA when results were compared to direct culture usingEnterococcosel agar (68). A significantly higher PPV of 92.0% was
reported using the Cepheid Xpert vanA and vanB assay, but refer-ence culture was performed using a broth enrichment step prior toplating, which may increase the recovery of VRE in culture (71).Interestingly, a similar study evaluating the Xpert vanA and vanBassay using broth-enriched culture reported a PPV of only 32%(72). These data suggest that the reference culture method canaffect assay performance data, but additional factors also contrib-ute to the poor PPV commonly observed with these assays.
A major factor impacting PPV and NPV calculations is thepretest probability or prevalence of a given target, in this case VRE,in the population being studied. In the two studies that reported aPPV greater than 90%, VRE prevalence was 30% and 47% amongthe specimens tested, whereas both studies reporting low PPVs of1.4% and 2.6% had VRE prevalence of 1.3% and 1.4%, respec-tively (68, 69, 71, 73). These data suggest that the utility of molec-ular assays to serve as a “rule-in” test is limited; however, theseassays can still be effectively used to identify noncolonized pa-tients with a high NPV. An obvious advantage of molecular assaysis the potential to reduce turnaround time (TAT) by 18 to 72 hcompared with culture, thereby enabling rapid screening to ruleout VRE. The short TAT may be especially beneficial for facilitiesthat implement strategies where all new or returning high-riskpatients are treated as VRE patients until a screen returns negative.However, the additional cost of primary screening using compar-atively expensive molecular assays must be weighed against thecost of unnecessary isolation measures, which may include gowns,gloves, and private rooms.
Another factor contributing to the reported low specificity andPPV of NAATs is the presence of vanA and vanB in multiple bac-terial species other than Enterococcus spp., including Streptococcusmitis, Streptococcus bovis, Eubacterium lenta, Ruminococcus spp.,Lactococcus spp., Leuconostoc spp., and some Clostridium species(68, 74). Many of these organisms are ubiquitous colonizers of the
TABLE 2 Summary of published performance data on FDA-cleared chromogenic agar for VRE
Detection methoda Sensitivity (%) Specificity (%)Time toresult (h) Notes Reference(s)
BEAVb 84.8–87.6 73–100 48–72 Breakthrough of nonpathogenic E. gallinarumand E. casseliflavus due to intrinsic resistance.False-positive results if Leuconostoc orPediococcus spp. are present in specimen
58–61
ChromogenicchromID VRE 86.3–98.2 97.5–100 48 (read at 24
and 48)Differentiates E. faecalis from E. faecium by color 58, 61, 62
VRESelect 91.9–98.7 99.0–99.7 24–28 Differentiates E. faecalis from E. faecium by color 58, 59Spectra VRE 93.9–98.2 99.–99.7 24 Uses -galactosidase to differentiate E. faecium
from E. faecalis58, 60
CHROMagar 98.2–98.6 96.5–99.1 24 Differentiates pathogenic vs nonpathogenicEnterococcus by color
58, 62
Nucleic acid amplificationtest
Non-Enterococcus strains can carry vanA or vanB
BD GeneOhm 91.8 93.6 12 Positive predictive value, 66.6% 63Roche LightCycler
detection kitc
73.3, 85.4 99.6, 83.9 �4 Positive predictive value, 68.5% and 1.42% 64
Cepheid Xpert 61–100 69.3–99.5 1 Positive predictive values range from 2–32% forvanB and 66–92% for vanA
71–73, 75
a Gold standard used to confirm VRE was Gram stain, followed by catalase and pyrrolidonyl arylamidase (PYR) tests. Etests were used to confirm vancomycin resistance.b BEAV, bile esculin azide agar containing vancomycin.c Values for Roche LightCycler are for for vanA and vanB isolates, respectively.
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human gastrointestinal (GI) tract, and vanB carriage can be highin both healthy and sick individuals. Graham et al. observed highrates of nonenterococcal vanB carriage in community adults(63%), children (27%), and hemodialysis patients (27%) (75).Currently available molecular tests do not link the van genes toEnterococcus; therefore, they cannot differentiate between vanAand vanB carried by Enterococcus versus other bacterial species.This shortcoming can be minimized through the use of an assaytargeting only vanA, provided it is used in a geographic regionwith a low prevalence of Enterococcus spp. harboring vanB. Alter-natively, preenrichment of specimens for 16 to 24 h in selectivebroth containing 16 mg/liter amoxicillin, 20 mg/liter amphoteri-cin B, 20 mg/liter aztreonam, and 20 mg/liter colistin significantlyincreased Xpert vanA and vanB assay specificity when coupledwith a reduced cycle threshold (CT) for calling positive results(76). Following selective broth enrichment, a CT of �25 demon-strated a sensitivity, specificity, PPV, and NPV of 97%, 100%,100%, and 99.5%, respectively. This is compared to values of100%, 77.3%, 41%, and 100%, respectively, for nonenriched sam-ples using the assay default of CT �35 for calling a positive result.Importantly, broth-enriched specimens with a CT of �30 werereliably reported as true negative; however, specimens with CT
values of 25 to 30 were variable and required culture confirmationbefore reporting. In addition to requiring independent validationof modified specimen and CT thresholds, broth enrichment alsodelays the reporting of results by 18 to 24 h. This delay abrogatesone of the key advantages of molecular assays, namely, rapid TAT,and mirrors the time to result using chromogenic agars, which, ingeneral, are less expensive per specimen than molecular assays.Finally, the use of NAAT as a primary screen for VRE means thatorganisms are not recovered and therefore are not available forstrain typing to aid in outbreak epidemiology.
Conclusion. Reducing the total prevalence of VRE and VREinfections in individual hospital settings requires multiple strate-gies, including antimicrobial stewardship, active screening of at-risk patients, strict adherence to hand hygiene, and effective roomcleaning after discharge. Laboratories considering implementa-tion of the CDC recommendations to perform active screeningshould look at several factors to ensure that implementationwould be beneficial and cost-effective. Hospital settings that havea high prevalence of VRE infection have the potential to achievethe most dramatic reductions in VRE HAIs and associated totalcost of care per patient. For hospitals with a low prevalence ofVRE, the cost of additional screening and infection control mea-sures needs to be weighed against the risk and frequency of VREinfections. However, because the cost of BSI can be $20,000 to$30,000 per patient, the prevention of a single VRE BSI per year mayoffset the cost of screening and infection control measures (77).
The choice of screening methodology can impact the success ofinfection control measures and the total cost of the program. Thelow PPV of molecular testing methods and comparatively highcost may make it difficult to justify NAAT-based primary screen-ing for all hospital admissions. Conversely, culture is relativelyinexpensive but delays results by at least 18 h, which in turn canreduce the effectiveness of infection control measures. One possi-ble solution is to reserve NAATs for an initial admission screen ofpatients at highest risk for infection (ICUs and transplant wards),with subsequent weekly surveillance conducted by culture. Thisworkflow removes the initial 18- to 24-h window for transmissionwhen using culture and allows for the immediate isolation of patients
with a positive result until culture confirmation is available. However,this method may be costly for hospitals with a large number of high-risk admissions and may be impractical for hospitals with limitedspace dedicated for single-patient isolation rooms.
Regardless of screening methodology (culture versus NAAT)or approach (targeted versus universal, active versus passive), it isessential to ensure communication between the laboratory, pri-mary care providers, and infection control practitioners to ensureappropriate implementation of infection control programs fol-lowing a positive laboratory result. Inadequate or delayed inter-ventional measures or lack of adherence to these programs willresult in a failure of infection control efforts and adds unnecessarycost to patient care without providing added value.
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Blake W. Buchan, Ph.D., D(ABMM), is an As-sistant Professor of Pathology at the MedicalCollege of Wisconsin and Associate Director ofMicrobiology at Wisconsin Diagnostic Labora-tories, Milwaukee, WI. He was awarded a Ph.D.in microbiology from the University of Iowa in2009 for his work elucidating regulatory mech-anisms for the expression of virulence factors inFrancisella tularensis and completed postdoc-toral training in Clinical Microbiology at theMedical College of Wisconsin in 2011. Dr. Bu-chan’s interests include matrix-assisted laser desorption ionization–time offlight mass spectrometry (MALDI-TOF MS), PCR, and microarray-baseddiagnostics for the detection of bacterial, viral, and fungal pathogens, and hehas served as Principal Investigator for numerous clinical trials evaluatingnovel diagnostic assays. Dr. Buchan is involved with several professionalsocieties, including ASM and SCACM, and is a member of the editorialboard for the Journal of Clinical Microbiology. Dr. Buchan has a strong recordof publication in peer-reviewed journals and has presented at numerousscientific meetings, including ASM, ECCMID, CVS, IDSA, SCACM, andICAAC.
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