restriction endonucleases by stephanie, jennice, jessica
TRANSCRIPT
Restriction EndonucleasesBy Stephanie, Jennice, Jessica
Definition
• Restriction enzymes (restriction endonucleases) are enzymes that cut double stranded DNA into fragments at specific nucleotide sequences
The Recognition Sites
• Each type of restriction enzyme recognises a characteristic sequence of nucleotides known as its recognition site ex. restriction enzyme EcoRI binds to – 5’-GAATTC-3’/3’ - CTTAAG -5’
– Recognition sites are usually palindromic and consist of four to eight nucleotides
Recognition Site Diagram
Sticky & Blunt Ends
EcoRI produces "sticky" ends,
SmaI restriction enzyme produces "blunt" ends
Sticky & Blunt Ends• Sticky ends are more useful because they are
easily joined to other sticky end fragments through complementary base pairing
• Recognition sites → usually four base pair to eight-base-pair sequences → low cut frequency– Important for excising a piece of DNA that
includes the whole gene
• Restriction enzymes that cleave at six-base-pair recognition sites → frequency of cuts used for many applications
Joining of Sticky Ends
Isolating Restriction Enzymes• Restriction enzymes are isolated and
purified from bacteria– One role of restriction enzymes in bacterium
→ crude immune system– Bacteriophage attacks & injects DNA into
bacterium (Figure A)– Bacterium detects foreign DNA, the
bacteria’s restriction endonuclease searches for recognition sites (foreign DNA will inevitably have recognition sites)
Isolating Restriction Enzymes–Restriction endonuclease cleaves
the bacteriophage DNA into fragments → bacteriophage DNA fragments can’t be transcribed/translated into anything useful (Figure B)
–Bacteria cell’s genome is protected & continues to function
Isolating Restriction Enzymes
P.g 280
Examples of Restriction Enzyme Naming
BamHI HindII
B – genus Bacillusam – species amyloliquefaciensH – strainI – first endonuclease isolated from the strain
H – genus Haemophilusin – species influenzad – strain RdII – second endonuclease isolated from the strain
Naming of Restriction Endonucleases
Methylases• In prokaryotes, methylases → prevent
restriction endonucleases from cutting a bacterium's own DNA by adding a methyl group to its DNA
• Foreign DNA is not methylated → defenceless against the restriction endonucleases
• Important tools for molecular biologists that work with prokaryotic organisms → protect a gene fragment from being cleaved in an undesired location
DNA Ligase• Once DNA is cut by restriction
endonucleases,DNA ligases rejoin the fragments• Hydrogen bonding between two complementary
sticky ends is not strong enough → DNA ligases reform the phosphodiester linkage between the backbones of the double strand– Does this by driving out a water molecule.
• Joining stands with blunt ends using DNA ligase is very inefficient
• Molecular biologists use T4 DNA ligase.
• Video time!!!!!• http://www.youtube.com/watch?v=aA5fyWJh5S0&feature=related