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  • Sample & Assay Technologies Oxidative Stress and ROS Signaling

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    Contact Technical Support

    North America: [email protected] [email protected]

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  • Sample & Assay Technologies Legal Disclaimer

    QIAGEN products shown here are intended for molecular biology applications. These products are not intended for the diagnosis, prevention, or treatment of a disease.

    For up-to-date licensing information and product-specific disclaimers, see the respective QIAGEN kit handbook or user manual. QIAGEN kit handbooks and user manuals are available at www.QIAGEN.com or can be requested from QIAGEN Technical Services or your local distributor.

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  • Sample & Assay Technologies Oxidative Stress and ROS Signaling

    Overview Oxidants & antioxidant in biological

    systems Antioxidant defense mechanism Molecular targets of oxidative stress Detection of oxidative stress

    Research Solutions @ QIAGEN Gene expression Epigenetics Functional studies

    Application Examples

    3

  • Sample & Assay Technologies Oxidative stress and ROS signaling

    Oxidative stress: imbalance between reactive oxygen species (ROS) and antioxidants.

    Under normal conditions, cells are able to balance the production of oxidants and antioxidants. Oxidative stress occurs when cells are subjected to excess levels of ROS or as a result of antioxidant depletion.

    ROS: chemically reactive molecules containing oxygen, highly reactive

    Under normal conditions, ROS are natural byproducts. It also can be generated by exogenous sources.

    Major sources of ROS: mitochondria, peroxisome, plasma membrane/cytoplasm.

    Role of reactive oxygen species in cell signaling pathways, Biochemical and Biomedical Aspects of Oxidative Modification 2001

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    Endogenous sources

    MitochondriaPeroxisomes

    Cytochrome P450

    Exogenous sourcesUV light

    Inflammatory cytokines

    Pathogens

    AntioxidantsVitamin ESeleniumLycopeneGreen tea

    SNPsDNA repairOxidative enzymes

    ROSOxidative Stress

    Damage to DNA, RNA, protein and

    lipidsChromosomal

    instability, gene mutations

    Altered gene expression

  • Sample & Assay Technologies The biological importance of ROS

    Physiological positive effects of ROS Kill microorganism Second messenger (H2O2) Cellular differentiation & proliferation Regulate signal transduction &

    transcription

    Cytokines and growth factor receptors (EGFR, PDGFR, VEGFR, receptors of TNF, IFN and IL-1)

    Non-receptor tyrosine kinases (JAK, Src, MAPK and PI3K) Protein tyrosine phosphatases Serine/Threonine kinases (Akt, PKC and MAPK) Nuclear transcription factors (NF B, AP-1, NFAT, HIF-1 and

    Nrf2)

    Oxidative Stress and Oxidative Damage in Carcinogenesis, Toxicologic Pathology, 38: 96-109, 2010

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    ROS

    PLC

    PI3KAkt ATM

    NFkB

    ERKJNKp38

    NFAT

    JAK

    PKCp53

    C-Jun

    Nrf2

    Gene expression changes

  • Sample & Assay Technologies Antioxidant defense mechanism

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    Inhibit excess ROS formation, capture radicals, maintain redox homeostasis and correct mechanism of destroyed biomolecules

    Mediated through Antioxidant Responsive Element (ARE) sequence Controlled by nuclear transcription factors Nrf2, AP-1, NFB, p53, NFAT

    ROS Transcription factors

    Transcription

    ARE AREAntioxidant response elements (AREs)

  • Sample & Assay Technologies Nrf2-mediated oxidative stress response

    Nrf2: Nuclear factor-erythroid 2-related factor is a basic leucine zipper (bZIP) transcription factor that binds to ARE to activate transcription.Keap1: Kelch-like ECH-associated protein 1. Keap1 interacts with Nrf2 in a redox-sensitive manner.

    Inactive Nrf2 is retained in the cytoplasm by association with Keap1. Upon exposure to oxidative stress, Nrf2 is phosphorylated in response to the PKC, PI3K, and MAPK pathways. After phosphorylation, Nrf2 is translocated to the nucleus, binds AREs, and activates detoxifying enzymes and antioxidant enzyme.

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  • Sample & Assay Technologies Antioxidants maintain oxidative balance

    Non-enzymatic antioxidants Alpha tocopherol (vitamin E) Ascorbic acid (vitamin C) Beta carotene

    Antioxidant enzymes Superoxide dismutase (SOD) O2 + O2 + 2H+ O2 + H2O2 Catalase (CAT) 2 H2O2 2 H2O + O2 Glutathione peroxidase (GPx) 2 G-SH + R-O-OH G-SS-G + R-OH + H2O

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  • Sample & Assay Technologies- 9 -

    Antioxidant Action of Vitamin-C

    Vitamin-C is a potent antioxidant and a regulator of redox-signal transduction

    Under stress, Vitamin-C acts as a primary antioxidant in plasma and cells

    Vitamin-C quenches ROS and serves as a cofactor of enzymes involved in the synthesis of collagen, carnitineAnd neurotransmitters

    https://www.qiagen.com/geneglobe/pathwayview.aspx?pathwayID=34&

  • Sample & Assay Technologies Oxidative damage of ROS

    Aggregation and fragmentation

    Enzyme inhibition

    Proteins DNA strand breaks Mutations leading

    to cancer

    DNA Lipid peroxidation Damage to

    membranes and lipoproteins

    Membrane

    ROS

    Oxidative stress, disease and aging

    Review article: Molecular targets of oxidative stress Biochem. J. (2011) 434, 201

    What is the cellular targets of ROS that account for the toxicity?

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  • Sample & Assay Technologies Overview of oxidative stress & ROS

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  • Sample & Assay Technologies Diseases associated with oxidative stress

    Diabetes

    COPD

    Neuro-degeneration

    Asthma

    Cardio-Vasculardisease

    Dermatitis

    Infertility

    Athero-sclerosis

    Cancer

    OxidativeStress

    inflammationChronic inflammation

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    Oxidative Oxidative stress

  • Sample & Assay Technologies Oxidative stress links chronic inflammation & cancer

    Oxidative stress, chronic inflammation, and cancer are closely linked Free radicals as a link of oxidative stress to inflammation and cancer

    Oxidative stressOxidative stress

    Carbonylic adducts Hydro & lipoperoxides Imbalance in DNA repair

    Imbalance between pro & anti-apoptotic processes, altered gene expression & mutations

    Chronic inflammation

    Activation of Inflammatory cells

    ROS production

    LOXs, COXs, PHGPx iNOS

    NFkBCytokines

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  • Sample & Assay Technologies ROS play multiple roles in the hallmarks of cancers

    Review article: Oxidative Stress, Tumor Microenvironment, and Metabolic Reprogramming: A Diabolic Liaison International Journal of Cell Biology. 2012

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  • Sample & Assay Technologies

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    Oxidative stress is tightly linked to mitochondrial dysfunction, and mitochondria are both generators of and targets of ROS

    In respond to cellular stress, necrosis, apoptosis and autophagy are activated.

    Mitochondrial turnover is dependent on autophagy

    Dysregulated redox signaling or mitochondrial dysfunction affect autophagic activities

    Mitochondria are the targets of ROS

    Review article: Autophagy, mitochondria and oxidative stress: cross-talk and redox signaling Biochem. J. 2012, 441, 523

  • Sample & Assay Technologies miRNAs are modulators and targets of oxidative stress

    Inflammation and cancer: interweaving microRNA, free radical, cytokine and p53 pathways Carcinogenesis, 31(1): 3749, 2010

    miRNAs are non-coding RNA molecules that modulate the stability and/or the translational efficiency of target messenger RNAs

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    Oxidative Stress and MicroRNAs in Vascular Diseases Int. J. Mol. Sci. 2013, 14

    Relevant miRNAs in oxidative stress response

    ROS source

    miRNAs

    upregulated Tissue/organ Source Target Functions

    H2O2 miR-200c

    miR-141 endothelium

    miR-200a myoblasts Human ZEB1 apoptosis

    miR-200b

    miR-429

    H2O2 miR-200c ROS accumulation;

    miR-141 miR-200a ovarian Human p38 improved response to

    miR-200b adenocarcinomas chemotherapy

    miR-429

    H2O2 miR-200c primary Mouse Unknown Unknown

    hippocampal

    neurons

    Obesity miR-200c miR-141 Heart Rat S6K1 compensatory/adaptive

    mechanisms

  • Sample & Assay Technologies Detection of intracellular oxidative stress

    Direct approach Detection of ROS / free radicals Colorimetric (ROS-dependent reactions),

    fluorometric (ROS-sensitive probes) Challenging: short-lived, highly reactive

    molecules

    Indirect approach Antioxidant enzyme activity Detect oxidative stress damage products Measure cellular antioxidant capacity Simple: more stable modifications of

    macromolecules Wide range of techniques

    Untreated Cells

    Treated Cells

    The cell-permeant dye H2-DCF-DA is non-fluorescent in a reduced state and exhibits fluorescence upon oxidation by ROS.

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  • Sample & Assay Technologies Detection of oxidative damage to macromolecules

    Lipid markers of oxidative stress 4-Hydroxynonenal (HNE) is a by-product of lipid peroxidation, widely used as a

    marker of chronic oxidative stress

    Protein markers of oxidative stress Protein carbonylation formation of carbonyl derivatives of Pro, Lys, Arg and Thr

    residues is the most common product of protein oxidation (ELISA assay). Advanced oxidation protein products (AOPP) are created when proteins react with

    chlorinated oxidants.

    DNA markers of oxidative stress 8-hydroxydeoxyguanosine (8-OHdG)

    Antioxidant assays Catalase activity, SOD activity Total antioxidant capacity GSH levels

    Avery SV. Molecular targets of oxidative stress. Biochem J. 2011 Mar 1;434(2):201-10.18

  • Sample & Assay Technologies Oxidative Stress and ROS Signaling

    Overview Oxidants & antioxidant in biological

    systems Antioxidant defense mechanism Molecular targets of oxidative stress Detection of oxidative stress

    Research Solutions @ QIAGEN Gene expression Epigenetics Functional studies

    Application Examples

    19

  • Sample & Assay Technologies Oxidative stress studies: experiment design

    Functional studies

    Epigenetics

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    Gene expression

  • Sample & Assay Technologies Pathway-focused solution for gene expression analysis

    RT2 Profiler PCR Arrays

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    84 pathway-specific genes of interest

    5 housekeeping genes

    Genomic DNA contamination control

    Reverse transcription controls (RTC) n=3

    Positive PCR controls (PPC) n=3

    B2M, HPRT, RPL13A, GAPDH, HGDC

  • Sample & Assay Technologies Application 1: gene expression

    In response to cellular oxidative stress, pathways including necrosis, apoptosis, and autophagy will be activated.

    .How is cell fate determined under oxidative stress?

    FASEB J. 2011 October; 25(10): 3366FASEB J. 2011 October; 25(10): 3366FASEB J. 2011 October; 25(10): 3366

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  • Sample & Assay Technologies

    Experiment design

    Treat with glucocorticoidIsolate total RNA

    Reverse transcription

    (RT)

    Data Analysis

    cDNA synthesis

    qPCR

    Swiss-Webster mice MLO-Y4 cells

    Application 1: gene expression

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    1-2 pm EST, Feb. 3, 10, 17, 24, Monday, qPCR Technology webinar serieshttps://www2.gotomeeting.com/register/311390954

  • Sample & Assay Technologies

    Pathway-focused RT2 Profiler PCR Arrays

    Apoptosis RT2 Profiler PCR Array: 84 genes involved in programmed cell deathInclude: genes involved in induction of apoptosis, anti-apoptosis, regulation of apoptosis, DEATH domain proteins, caspases and regulators

    Autophagy RT2 Profiler PCR Array: 84 genes involved in autophagyInclude: autophagy machinery components, regulation of autophagy

    Oxidative stress RT2 Profiler PCR Array: 84 genes involved in oxidative stress

    Application 1: gene expression

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    human, mouse, rat, and up to 13 species

  • Sample & Assay Technologies

    Oxidative Stress RT2 Profiler PCR Array- human, mouse, rat, and more

    Antioxidants:Glutathione Peroxidases (GPx): GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, GSTP1, GSTZ1.

    Peroxiredoxins (TPx): PRDX1, PRDX2, PRDX3, PRDX4, PRDX5, PRDX6 (AOP2).

    Other Peroxidases: CAT, CYBB, CYGB, DUOX1, DUOX2, EPX, LPO, MGST3, MPO, PTGS1, PTGS2 (COX2), PXDN, TPO, TTN.

    Other Antioxidants: ALB, APOE, GSR, MT3, SELS, SOD1, SOD3, SRXN1, TXNRD1, TXNRD2.

    Genes Involved in ROS Metabolism:Superoxide Dismutases (SOD): SOD1, SOD2, SOD3.

    Other Genes Involved in Superoxide Metabolism: ALOX12, CCS, DUOX1, DUOX2, GTF2I, MT3, NCF1, NCF2, NOS2 (iNOS), NOX4, NOX5, PREX1, UCP2.

    Other Genes Involved in ROS Metabolism: AOX1, BNIP3, EPHX2, MPV17, SFTPD.

    Oxidative Stress Responsive Genes: APOE, ATOX1, CAT, CCL5 (RANTES), CYGB, DHCR24, DUOX1, DUOX2, DUSP1 (PTPN16), EPX, FOXM1, FTH1, GCLC, GCLM, GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, GSR, GSS, HMOX1, HSPA1A, KRT1, LPO, MBL2, MPO, MSRA, NQO1, NUDT1, OXR1, OXSR1, PDLIM1, PNKP, PRDX2, PRDX5, PRDX6 (AOP2), PRNP, RNF7, SCARA3, SELS, SEPP1, SIRT2, SOD1, SOD2, SQSTM1, SRXN1, STK25, TPO, TTN, TXN, TXNRD1, TXNRD2.

    Oxygen Transporters: CYGB, MB.

    Application 1: gene expression

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  • Sample & Assay Technologies

    Results: Excess GC (glucocorticoid) decreased the expression of oxidative stress responsive genes

    Application 1: gene expression

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  • Sample & Assay Technologies Application 1: oxidative stress & autophagy

    Results: Activation of the antioxidant genes positively correlated with activation of the autophagic

    genes No significant correlation between the activation of antioxidant and antiapoptosis genes

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  • Sample & Assay Technologies Application 1: gene expression in oxidative stress

    RT2 Profiler PCR Arrays

    Apoptosis

    Autophagy

    Necrosis

    Cell Death Pathwayfinder

    Chemokines & Receptors

    Cytokines & Chemokines

    DNA Damage Signaling

    Hypoxia Signaling

    IL6/STAT3 Signalin

    Inflammatory Cytokines & Receptors

    Inflammatory Response & Autoimmunity

    Oxidative Stress

    JAK / STAT Signaling

    MAP Kinase Signaling

    mTOR Signaling

    NFkB Signaling

    TNF Signaling

    Toll-Like Receptor Signaling

    Transcription Factors

    p53 Signaling

    PI3K-AKT Signaling

    VEGF Signaling

    WNT Signaling

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  • Sample & Assay Technologies Oxidative stress: gene expression

    Apoptosis:Pro-Apoptotic: ABL1, APAF1, ATP6V1G2, BAX, BCL2L11, BIRC2 (c-IAP2), CASP1 (ICE), CASP3, CASP6, CASP7, CASP9, CD40 (TNFRSF5), CD40LG (TNFSF5), CFLAR (CASPER), CYLD, DFFA, FAS (TNFRSF6), FASLG (TNFSF6), GADD45A, NOL3, SPATA2, SYCP2, TNF, TNFRSF1A, TNFRSF10A (TRAIL-R), TP53.Anti-Apoptotic: AKT1, BCL2, BCL2A1 (Bfl-1/A1), BCL2L1 (BCL-X), BIRC3 (c-IAP1), CASP2, IGF1R, MCL1, TNFRSF11B, TRAF2, XIAP.

    Autophagy: AKT1, APP, ATG12, ATG16L1, ATG3, ATG5, ATG7, BAX, BCL2, BCL2L1 (BCL-X), BECN1, CASP3, CTSB, CTSS, ESR1 (ERa), FAS (TNFRSF6), GAA, HTT, IFNG, IGF1, INS, IRGM, MAP1LC3A, MAPK8 (JNK1), NFKB1, PIK3C3 (VPS34), RPS6KB1, SNCA, SQSTM1, TNF, TP53, ULK1.

    Necrosis: ATP6V1G2, BMF, C1orf159, CCDC103, COMMD4, CYLD, DEFB1, DENND4A, DPYSL4, EIF5B, FOXI1, GALNT5, GRB2, HSPBAP1, JPH3, KCNIP1, MAG, OR10J3, PARP1 (ADPRT1), PARP2, PVR, RAB25, S100A7A, SPATA2, SYCP2, TMEM57, TNFRSF1A, TXNL4B.

    Cell Death PathwayFinder PCR Array

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  • Sample & Assay Technologies Applications of oxidative stress PCR Arrays

    Publications Citing the Oxidative Stress PCR Array

    Susceptibility to Inhaled Flame-Generated Ultrafine Soot in Neonatal and Adult Rat Lungs, TOXICOLOGICAL SCIENCES 124(2), 472486 (2011), Jackie K. W. Chan,* Michelle V, etc.

    Adaptive induction of NF-E2-related factor-2-driven antioxidant genes in endothelial cells in response to hyperglycemia, Am J Physiol Heart Circ Physiol 300: H1133H1140, 2011, Zoltan Ungvari,1 Lora Bailey-Downs, etc.

    Tryptophan from human milk induces oxidative stress and upregulates the Nrf-2-mediated stress response in human intestinal cell lines. J Nutr. 2011 Aug;141(8):1417-23. Elisia I, Tsopmo A, Friel JK, etc.

    Age-related gene response of human corneal endothelium to oxidative stress and DNA damage. Invest Ophthalmol Vis Sci. 2011 Mar 1;52(3):1641-9. Joyce NC, Harris DL, Zhu CC

    Gene expression analysis of oxidative stress and apoptosis in proton-irradiated rat retina. In Vivo. 2010 Jul-Aug;24(4):425-30. Mao XW, Green LM, Mekonnen T, Lindsey N, Gridley DS

    Increased ANG II sensitivity following recovery from acute kidney injury: role of oxidant stress in skeletal muscle resistance arteries. Am J Physiol Regul Integr Comp Physiol. 2010 Jun;298(6):R1682-91. Phillips SA, etc.

    Effects of spaceflight on innate immune function and antioxidant gene expression. J Appl Physiol. 2009 Jun;106(6):1935-42. Baqai FP, Gridley DS, Slater JM, Luo-Owen X, Stodieck LS, Ferguson V, etc.

    Oxidative stress: molecular perception and transduction of signals triggering antioxidant gene defenses. Braz J Med BiolRes. 2005 Jul;38(7):995-1014. Scandalios JG

    Oxidative stress and gene regulation. Free Radic Biol Med. 2000 Feb 1;28(3):463-99. Allen RG, Tresini M

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  • Sample & Assay Technologies

    Transcription factors Nrf2 and Nrf1 bind to the antioxidant response elements (ARE) and regulate genes involved in protecting cells from oxidative damages.

    .How to measure the degree of antioxidant response?

    Application 2: gene functions

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  • Sample & Assay Technologies Application 2: reporter assays for oxidative stress

    Cignal Reporter Assays & Arrays

    Dual-luciferase format GFP format DNA and Lenti assay 45 signaling pathways

    http://www.qiagen.com/search/cignal-reporter-assay-kits32

  • Sample & Assay Technologies

    45-pathway array & 10-Pathway ArraysSingle Pathway Assay

    Antioxidant Response ReporterCignal Finder Stress & Toxicity 10-pathway reporter Kit

    Measure the transcriptional activity of the Nrf2 (NF-E2-related factor 2) and Nrf1 transcription factors. Nrf2 and Nrf1 bind to the antioxidant response elements (AREs) and regulate genes involved in protecting cells from oxidative damage.

    Application 2: reporter assays for oxidative stress

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  • Sample & Assay Technologies

    Answer two questions: 1. Whether hyperglycemia activates Nrf2 in endothelial cells?2. Whether induction of Nrf2-regulated ROS detoxification systems protect

    endothelial function in type 2 diabetes?

    Experiment procedure: Treat wild type and Nrf2 knockout mouse with a high-fat diet (HFD) and standard diet Use reporter assay to measure Nrf2 activity

    Application 2: reporter assays for oxidative stress

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    Published data using Cignal reporter assay kit

  • Sample & Assay Technologies

    Results & conclusion: Hyperglycemia induces oxidative stress Adaptive activation of the Nrf2/ARE pathway has a critical role in endothelial protection in response

    to diabetic condition both in vitro and in vivo.

    Application 2: reporter assays for oxidative stress

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    Glucose (mmol/L)

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  • Sample & Assay Technologies

    Functional genomics: Assess RNA interference phenotypesAssess overexpression phenotypes

    Functional proteomics: Analyze the effects of recombinant protein or peptide treatments

    Drug discovery: Screen and validate small molecule drug candidates

    Applications: Cignal reporter assay kits

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    Download a white paper Cignal Reporter Assay Kit: A high-performance tool for assessing the functions of genes, biologics, and small molecule compounds - (EN) http://www.qiagen.com/knowledge-and-support/resource-center/resource-download.aspx?id=6fc8144b-010b-43d8-9125-bf541a5d9c9c&lang=en

    BenefitsExcellent sensitivity and specificityMaximal signal-to-noise ratioMinimal background transcription and rapid responseReduced experimental variation and greater reliability

  • Sample & Assay Technologies Application 3: antioxidant response mechanism

    miRNAs play a regulatory role in Nrf2/Keap1 pathway

    How is Keap1 regulated?

    What is the mechanism of Nrf2-dependent antioxidant response in cancer?

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    Dysregulation of the NRF2 signaling pathway is linked to cancer chemotherapy resistance

    Nrf2 may contribute to tumorigenesis Nrf2 as a miRNA transcription factor A number of miRNAs are regulated by Nrf2

  • Sample & Assay Technologies Application 3: miRNA expression profiling

    Human breast cancer cell lines MDA-MB-231 and Hs578T, non-tumorigenic MCF-10A cells

    Profiled the expressions of 84 miRNAs using Human miFinder PCR Array (MIHS-001Z)

    Experiment design:

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  • Sample & Assay Technologies miScript miRNA PCR Arrays

    1 hour

    2 minutes

    2 hours

    15 minutes

    miFinder miRNA PCR Array

    Profiles the expression of the 84 most abundantly expressed and best characterized miRNAs in miRBase (www.miRBase.org);

    Maximize the likelihood of discovering miRNAs whose expression patterns correlate with the biological phenotypes;

    Available in Human, Mouse, Rat, Dog, Rhesus Macaque, more

    miRNA PCR Array miFinder Serum & Plasma Brain Cancer Breast Cancer Ovarian Cancer Prostate Cancer Cancer PathwayFinder Apoptosis Inflammatory Response and

    Autoimmunity

    Workflow

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  • Sample & Assay Technologies Application 3: miRNA expression profiling

    Conclusion: miR-200a regulates the Keap1/Nrf2 pathway in mammary epithelium ; Epigenetic therapy can restore the miR-200a regulation of Keap1 expression, therefore to reactivate Nrf2-dependent antioxidant pathway in breast cancer.

    Measured Nrf2 ARE promoter activity using luciferase reporter assay

    Epigenetic therapy restored miR-200 expression and reduced Keap1 level

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    miR-200c is a tumor suppressor miRNA, involved in cancers such as breast, ovarian, endometrial, colorectal cancer, and pancreatic cancer

    Normal cell: MCF-10A

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    Mature miRNAs Fold changes

    has-miRNA-141 -869.07

    has-miRNA-200c -422.65

    has-miRNA-2302c -66.41

    has-miRNA-196b -65.95

    has-miRNA-143 -40.32

    has-miRNA-122 -18.68

    has-miRNA-7f -15.07

  • Sample & Assay Technologies miRNA assays and reagents from QIAGEN

    Target Identification Expression

    Isolation

    Function

    miRNA mimics & inhibitors

    miScript miRNA PCR Arrays

    miRNeasy

    miRNAStudies

    Feb 6-27, Thursday: 4 part miRNA focused webinar series, monthlyhttps://www2.gotomeeting.com/register/152689794

    RT Profiler microRNA Targets PCR Arrays

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  • Sample & Assay Technologies Oxidative stress and DNA methylationStress & Toxicity PathwayFinder DNA Methylation PCR Array

    Oxidative Stress: BNIP3, CYP1A1, GPX3, PRDX2, PTGS2 (COX2), SCARA3.

    DNA Damage: ATM, BRCA1, CCND1, GADD45A, GADD45G, MLH1, MSH2, TP53, XPC.

    Unfolded Protein Response: INSIG1, UBE2G2.

    Hypoxia Signaling: CSTB, RARA.

    Heat Shock Protein: DNAJC15.

    Growth Arrest & Senescence: ATM, CDKN1A (p21CIP1/WAF1), GADD45A, GDF15 (PLAB), MSH2, TP53.

    Inflammation: PRDX2, PTGS2 (COX2).

    Anti-Apoptosis: BNIP3, CDKN1A (p21CIP1/WAF1), PRDX2.

    Proliferation & Carcinogenesis: BRCA1, CCND1, CDKN1A (p21CIP1/WAF1), CYP1A1, PRDX2, PTGS2 (COX2), TP53.

    EpiTect Methyl qPCRArray workflow

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  • Sample & Assay Technologies We provide service send samples to us & receive results

    . Whole Genome Illumina Gene Expression Profiling Illumina Genotyping

    . Pathway / Focused Panel Mutation Profiling Methylation PCR Array miRNA PCR Array

    . Individual Gene / Locus Mutation Detection Methylation qPCR

    . Sample Preparation DNA, RNA Extraction and Purification Cells, Tissue or Biofluids Fixed Tissue Small Sample

    . http://www.qiagen.com/products/catalog/services/

    43

  • Sample & Assay Technologies

    Gene Expression RT2 Profiler PCR Arrays & Assays Custom PCR Arrays

    Epigenetics miScript miRNA PCR Arrays & Assays EpiTect Methyl qPCR Arrays & Assays qBiomarker Somatic Mutation PCR Arrays qBiomarker Copy Number PCR Arrays

    Functional Studies Cignal Reporter Assays SureSilencing shRNA Plasmid Flexitube siRNA Flexiplate siRNA, AllStar Control

    Summary

    QIAGEN offers many products for oxidative stress studies

    44

  • Sample & Assay Technologies Pathway-focused solutions @ QIAGENComplete systems: sample prep through data analysis

    45

    http://www.qiagen.com/

    http://www.qiagen.com/geneglobe/

  • Sample & Assay Technologies- 46 -

    Thank You for Attending!

    Are you ready to try?Contact Technical Support

    North America:

    [email protected] [email protected]

    Phone: 1-800-362-7737

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