ros_induced histone modification
TRANSCRIPT
-
8/3/2019 Ros_induced Histone Modification
1/14
Drug Metabolism Reviews, 38: 755767, 2006
Copyright Informa Healthcare
ISSN: 0360-2532 print / 1097-9883 online
DOI: 10.1080/03602530600959649
755
ROS-INDUCED HISTONE MODIFICATIONS AND THEIRROLE IN CELL SURVIVAL AND CELL DEATH
Terrence J. Monks, Ruiyu Xie, Kulbhushan Tikoo, andSerrine S. LauDepartment of Pharmacology and Toxicology, College of Pharmacy, University of
Arizona Health Sciences Center, Tucson, Arizona; Laboratory of Chromatin Biol-
ogy, Department of Pharmacology and Toxicology, National Institute of
Pharmaceutical Education and Research, Sec. 67, Mohali 160062, Punjab, India
Much is known about the distal DNA damage repair response. In particular, many of the
enzymes and auxiliary proteins that participate in DNA repair have been characterized.
In addition, knowledge of signaling pathways activated in response to DNA damage is
increasing. In contrast, comparatively less is known of DNA damage-sensing molecules
or of the specific alterations to chromatin structure recognized by such DNA damage
sensors. Thus, precisely how chromatin structure is altered in response to DNA damage
and how such alterations regulate DNA repair processes remain important unanswered
questions. In vertebrates, phosphorylation of the histone variant H2A.X occurs rapidly
after double-strand break formation, extends over megabase chromatin domains, and is
required for stable accumulation of repair proteins at damage foci. We have shown that
reactive oxygen species (ROS)-induced DNA single-strand breaks induce the incorpora-tion of32P specifically into histone H3. ADP-Ribosylation of histones may stimulate local
chromatin relaxation to facilitate the repair process, and, indeed, histone ribosylation
preceded DNA damage-induced histone H3 phosphorylation. However, H3 phosphoryla-
tion occurred concomitant with overall chromatin condensation, as revealed by decreased
sensitivity of chromatin to digestion by micrococcal nuclease and by DAPI staining of
nuclei. Inhibitors of the ERK and p38MAPK pathways and inhibition of poly(ADP-
ribose) polymerase all reduced ROS-induced H3 phosphorylation, chromatin condensa-
tion, and cell death. Precisely how changes in the post-translational modification of
histone H3 regulate the survival response remains unclear. Attempts to determine the
precise site of histone H3 phosphorylation, putative histone H3 kinases, and histone H3
interacting proteins are underway.
Key Words: Cell death; Chromatin; DNA damage; Histones; Mitotic catastrophe; Oncoticcell death; Post-translational modification; Premature chromatin condensation; Reactive
oxygen species; Stress response signaling.
Presented at the Seventh International Symposium on Biological Reactive Intermediates, Tucson,
Arizona, January 47, 2006.
Address correspondence to Terrence J. Monks, Ph.D., Department of Pharmacology and Toxicology,College of Pharmacy, 1703 E Mabel, P.O. Box 210207, Tucson, AZ 85721-0207, USA; Fax: 520-626-6944;
E-mail: [email protected]
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
2/14
756 T. J. MONKS ET AL.
INTRODUCTION
Molecular/Cellular Stress Responses to ROS-Induced DNA Damage
Although the cellular response to chemical-induced stress is relatively well charac-
terized, particularly the response to DNA damage, factors that govern the outcome of thestress response (cell survival or cell death) are less clearly defined. In a model of reactive
oxygen species- (ROS) induced cytotoxicity, treatment of renal proximal tubular epithelial
(LLC-PK1) cells with the ROS-generating nephrotoxicant and nephrocarcinogen
2,3,5-tris-(glutathion-S-yl)hydroquinone (TGHQ) results in cell death. Despite the fact
that LLC-PK1 cells are capable of engaging the machinery necessary to induce apoptotic
cell death, TGHQ-treated LLC-PK1 cells die via oncotic cell death (Jia et al., 2004). A
frequent response to ROS-induced cell stress that ultimately leads to oncotic cell death is
the premature engagement of chromosome condensation (PCC) and the ensuing mitotic
catastrophe. During the transition from the G2 phase into mitosis, relaxed interphase chro-
matin must be converted into mitotic condensed chromatin, a process considered essentialfor nuclear division. Therefore, a critical event during the cell cycle is the timing of the
initiation of DNA replication (S-phase entry). Rigid controls function to prevent repeated
rounds of DNA replication without intervening mitoses or the initiation of mitosis before
DNA replication is complete (mitotic catastrophe). Although some of the genetic inter-
actions that participate in this process have recently been identified in yeast (Novak and
Tyson, 1997), little is known about their mammalian counterparts. Indeed, until recently
relatively little was known about the mechanisms and factors that regulate this transition
in chromatin structure. Because a variety of phosphatase inhibitors induce PCC (Coco-
Martin and Begg, 1997), protein phosphorylation likely plays an important role in this
process. However, the targets for phosphorylation and the corresponding protein kinases
are poorly defined. Moreover, the signal transduction pathways activated during thecommitment phase of oncotic cell death are insufficiently characterized.
ROS-mediated MAPK activation and cell death. Oxidative stress is knownto activate mitogen-activated protein kinases (MAPKs) (Cobb, 1999). The MAPK family
is comprised of three major subgroups: extracellular signal-regulated protein kinase
(ERK), c-Jun N-terminal kinases/stress-activated protein kinase (JNK/SAPK), and p38
MAPK (Cobb, 1999). ERKs behave mainly as mitogen-activated proliferation/differentia-
tion factors, whereas JNK/SAPK and p38 MAPK are mainly stress-activated proteins
related to apoptotic cell death. The MAPKs are all rapidly activated by TGHQ in LLC-
PK1 cells (Ramachandiran et al., 2002). Although in most situations the MAPK signaling
pathway is associated with cell survival, the activation of MAPKs, especially the ERKsubfamily, appears to play a causal role in ROS-induced cell death of renal proximal tubular
epithelial cells (Ramachandiran et al., 2002). Thus, inhibition of ERK1/2 activation with
PD98059 or inhibition of p38 MAPK activation with SB202190 attenuates cell death
induced by TGHQ (Ramachandiran et al., 2002). In contrast, the JNK inhibitor SP600125
has no effect on TGHQ-induced cell death (Ramachandiran et al., 2002). ERK1/2 activa-
tion may therefore contribute to both cell proliferation or cell death, dependent upon cell
type and the specific context. In a few cases, activated ERK1/2 seems to behave as a cell
death-inducing factor. Thus, ERK activation is related to vanadate-induced oncotic cell
death of vascular smooth muscle cells (Daum et al., 1998), in H2O2-induced cell death of
oligodendrocytes (Bhatt and Zhang, 1999), in T cells (van den Brink et al., 1999), and in
pleural mesothelial cells (Jiminez et al., 1997). Precisely how ERK activation is coupledto cell death in each of these models remains to be elucidated.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
3/14
ROS-INDUCED HISTONE MODIFICATIONS 757
ROS and chromatin. Although the histone proteins play a vital role in maintain-
ing chromatin structure, they also participate in the dynamics of chromatin remodeling
during both gene activation and gene silencing. This is achieved by a variety of post-transla-
tional modifications, including phosphorylation, acetylation, ubiquitination, methylation,
and ADP ribosylation, varying combinations of which influence the interaction of histoneswith DNA within the nucleosome, resulting in changes in chromatin structure and function
(Wolfe and Hayes, 1999; Cheung et al., 2000). In particular, phosphorylation of histones H1
and H3 on Ser-10 and 28 within its basic amino terminal tail (Mahadevan et al., 1991; Sauve
et al., 1999; Wei et al., 1999; Goto et al., 1999) has long been implicated in chromosome
condensation during mitosis (Koshland and Strunikov, 1996) and in response to various
mitogenic stimuli, such as growth factors or phorbol esters. These sites of phosphorylation in
histone H3 are highly conserved and are flanked by basic amino acid residues, which are
also susceptible to multiple post-translational modifications. Similarly, in histone H2B, two
highly conserved phosphorylation sites are located at serines 14 and 32. Interestingly, these
highly conserved serine residues in histones H3 and H2B are both 17 amino acids apart andlocated within the N-terminal histone tail domain (Cheung et al., 2000).
Increases in histone H1 kinase activity during heat shock occur coincidentally with
PCC and are associated with M-phase kinase complexes containing cyclin B1 (Mackey et al.,
1996). Early studies demonstrated that increases in H1 phosphorylation occurred during mito-
sis in a variety of eukaryotes (Roth and Allis, 1992). However, although H1 hyperphosphory-
lation is temporally associated with entry into mitosis and requires Cdc2 kinase activity
(Gurley et al., 1978; Davis et al., 1983; Langan et al., 1989), subsequent studies revealed that
chromatin condensation can occur in the absence of this modification (Guo et al., 1995) and
even without H1 itself (Shen et al., 1995). In contrast to the data on H1 phosphorylation,
experimental evidence strongly implicates a functional role for H3 phosphorylation in chro-
mosome condensation (Th'ng et al., 1994; Sauve et al., 1999), findings that appear to contra-dict the role of H3 phosphorylation in transcription-dependent chromatin decondensation.
This apparent paradox has been addressed by Strahl and Allis (2000) and attributed to the
histone code hypothesis, which states that multiple histone modifications act in concert to
specify a distinct functional response. Thus, multiple histone H3 phosphorylations, on resi-
dues Ser10 and 28 (Hendzel et al., 1997; Van Hooser et al., 1998; Chadee et al., 1999; Wei
et al., 1999; Goto et al., 1999) in the presence of other modifications on the same or multiple
histone tails, may be required to produce competent chromosome condensation during mitosis.
DNA damage also results in the specific post-translational modification of histones. In partic-
ular, phosphorylation of the histone variant H2A.X occurs rapidly after DNA double-strand
break formation, extends over megabase chromatin domains, and is required for the efficientand stable recruitment of repair proteins to sites of DNA damage (Thiriet and Hayes, 2005).
MAPK signaling and ROS-induced cell death. A novel role for the MAPK
pathway in progression from G2 into mitosis has been demonstrated (Wright et al., 1999).
Thus, when MAPK activation was inhibited with PD98059, which selectively inhibits
MEK, an upstream regulator of ERKs, in S-phase synchronized NIH 3T3 cells, the cells
arrested in G2. Expression of a dominant-negative form of MAPKK1 was also found to
delay the progression of cells through G2 (Wright et al., 1999). MAPKK activity was
required for the timely activation of Cdc2 and progression into mitosis. These findings
provide a potential mechanistic explanation for our own findings that TGHQ-induced histone
H3 phosphorylation and chromatin condensation are inhibited by PD98059. More importantly,
PD98059 protected against TGHQ-induced oncotic cell death, and cytoprotection corre-lated with decreases in H3 phosphorylation (Tikoo et al., 2001). Thus, ROS-dependent
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
4/14
758 T. J. MONKS ET AL.
ERK activation may be coupled to LLC-PK1 cell death via changes in chromatin structure,
mediated by increases in the phosphorylation of histone H3, a post-translational modifica-
tion required for both chromosome condensation and segregation during mitosis, and PCC
leading to cell death. Indeed, TGHQ-induced phosphorylation of histone H3 was accom-
panied by increases in chromatin condensation, observed by DAPI-fluorescent staining, andby increases in the sensitivity of chromatin to digestion by micrococcal nuclease (Tikoo et al.,
2001). Moreover, the changes in chromatin structure preceded cell death. Significantly,
the biochemical and immunohistochemical findings in LLC-PK1 cells were consistent
with changes in chromatin structure that occur in vivo in renal proximal tubular epithelial
cell nuclei following exposure of rats to a structurally related quinol-thioether (Rivera et al.,
1994). Interestingly, more than 20 years ago, temperature sensitive (ts) mutants of baby
hamster kidney cells (tsBN2 cells) (Kai et al., 1983) sustained histone H1 and H3 phos-
phorylation at temperatures that also induced PCC (Ajiro et al., 1983). However, prevention
of PCC only occurred concomitant with decreases in H3 phosphorylation, and not with H1
phosphorylation (Ajiro et al., 1985). Our data therefore suggest that LLC-PK1 cells respondto TGHQ-induced oxidative stress by the aberrant stimulation chromosome condensation
in the absence of the signals and machinery necessary to coordinate mitosis. Whether abrogation
of histone H3 phosphorylation is required for protection against ROS-induced oncotic cell
death in LLC-PK1 cells is not known. However, mitotic histone H3 phosphorylation promotes
the disassociation of the histone H3 amino terminal tail from DNA (Sauve et al., 1999).
This change in chromatin structure permits the association of additional factors with
DNA. ROS-induced phosphorylation of histone H3 in LLC-PK1 cells might thus result in
the exposure of DNA to chromosome condensing factors, facilitating chromatin condensation.
ROS-Induced Poly(ADP-ribose) Polymerase Activation. The generation of
ROS has been implicated in the pathogenesis of renal ischemia/reperfusion injury and
many other pathological conditions. DNA strand breaks caused by ROS lead to the activa-tion of poly(ADP-ribose)polymerase (PARP), the excessive activation of which results in
the depletion of both NAD+ and ATP (Pieper et al., 1999). It has been suggested that
depletions in NAD+ and ATP in response to DNA damage contribute to cell death as a
consequence of deficits in energy stores. For example, Chatterjee et al. (1999) showed that
incubation of primary cultures of rat proximal tubule epithelial cells with 1 mM H2O2
inhibited mitochondrial respiration and increased LDH release, with concomitant increases
in PARP activity. Moreover, inhibitors of PARP protected against H2O2-mediated cell
death (Cristovao and Rueff, 1996). Deletion of PARP also protects against NMDA-
receptor-activated neurotoxicity (Eliasson et al., 1997; Endres et al., 1997), myocardial
ischemia (Zingarelli et al., 1998), inflammation elicited by a variety of mediators(Zingarelli et al., 1999; Szabo et al., 1997; Oliver et al., 1999), and streptozocin-induced
diabetes (Matsutani et al., 1999; Burkart et al., 1999; Pieper et al., 1999). In all these mod-
els of cell death, the experimental evidence indicates that cell death occurs by oncosis
(Kerr et al., 1972; Wylie et al., 1980; Ankacrona et al., 1995; Nicotera et al., 1997).
PARP inhibitors not only block oncotic cell death (Ha and Snyder, 1999; Filipovic
et al., 1999), but also appear to shift the mode of cell death from oncosis to apoptosis in oxi-
dant-stressed endothelial cells (Walisser and Theis, 1999). In addition, using fibroblasts
obtained from mice with a targeted deletion of PARP (PARP/) DNA damage induced by
either MNNG or H2O2 failed to deplete intracellular concentrations of ATP, and the cells
were protected against oncotic cell death (Ha and Snyder, 1999) despite exhibiting exten-
sive DNA damage. However, the PARP/ cells still underwent apoptotic cell death. In con-trast, PARP+/+ cells treated with either MNNG or H2O2 died by oncosis, suggesting that
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
5/14
ROS-INDUCED HISTONE MODIFICATIONS 759
PARP activation may regulate the mode of cell death, perhaps by modulating ATP (and
NAD+ ?) concentrations. Because inhibition of PARP activity or PARP gene deletion can
prevent both ATP depletion and the induction of oncosis, it has been suggested that PARP
overactivation-induced oncosis is an active rather than a passive process (Ha and Snyder,
1999). This interpretation raises the question of whether the machinery exists with whichthe cell can switch the mode of cell death. The answer to this question has profound clinical
implications. For example, in many clinical situations, such as inflammation, vascular
stroke, and myocardial infarction, the predominant mechanism of cell death appears to be
oncotic. By extension, it has been predicted that PARP inhibitors may have therapeutic
benefit (Ha and Snyder, 1999). Consistent with this hypothesis, PARP inhibition or gene
deletion attenuates tissue injury associated with stroke, myocardial infarct, and diabetic
pancreatic damage (Eliasson et al., 1997; Endres et al., 1997; Zingarelli et al., 1998).
ROS-induced histone modifications: 1) histone ribsoylation facilitateshistone H3 phosphorylation. As previously noted, current dogma suggests that
depletions in NAD and ATP in response to DNA damage contribute to cell death as a con-sequence of deficits in energy stores. However, although H2O2 depletes ATP, causes
DNA damage, lipid peroxidation, and oncotic cell death in LLC-PK1 cells, inhibiting lipid
peroxidation with lazeroids or Trolox prevented oncotic cell death without affecting DNA
damage or depletion in ATP (Andreoli et al., 1997). Thus, DNA damage-induced deple-
tions in cellular ATP concentrations can be dissociated from oncotic cell death.
Although the biological functions of PARP are unclear, post-translational modification
of several nuclear proteins by PARP has been implicated in chromatin structure and function,
in surveillance of the genome, and in the regulation of proteins that participate in DNA repair
(DAmours et al., 1999). However, under conditions where PARP is either inhibited pharma-
cologically or deleted genetically, the potential consequences on PARP targets and their corre-
sponding influence on cell survival have not been considered. Histones are also substrates forADP ribosylation, although the significance of this particular modification is the one least
understood. Poly(ADP-ribosylation) participates in histone shuttling and nucleosomal unfold-
ing, facilitating DNA excision from chromatin (Realini and Althaus, 1992). Histone H1 at
glutamate 2 and 116 can undergo poly ADP-ribosylation (van Holde, 1989). ADP ribosylation
is relatively rare in unperturbed cells. However, when DNA is damaged, the almost immediate
ribosylation of histones is observed (Adamietz and Rudolph, 1984), and immunoaffinity-
purified ADP-ribosylated oligonucleosomes contain many DNA nicks (Malik et al., 1983).
Therefore poly ADP-ribosylation of histones may provide local relaxation to facilitate the
repair process. The end result of PARP inhibition will therefore depend upon the relative
effects of inhibiting DNA repair at the expense of conserving energy supplies (ATP). As pre-viously noted, however, DNA damage-induced depletions in cellular ATP concentrations can
be dissociated from oncotic cell death. Decreased PARP activity might therefore be cytopro-
tective against oncotic cell death by interfering with its ability to regulate chromatin structure.
Because PARP participates in histone shuttling and nucleosomal unfolding (Realini
and Althaus, 1992) it may also facilitate additional post-translational modification on the
subsequently exposed proteins. Consistent with this view, TGHQ-induced rapid (
-
8/3/2019 Ros_induced Histone Modification
6/14
760 T. J. MONKS ET AL.
suggesting that ADP-ribosylation and histone H3 phosphorylation are coupled in this
model of ROS-induced DNA damage and cell death. The prevention of both these post-translational modifications was accompanied by an increase in cell survival (Tikoo et al.,
2001). The coupling of histone phosphorylation to ribosylation has not been previously
demonstrated and suggests that PARP-mediated ADP-ribosylation of histones facilitates
histone H3 phosphorylation and that these post-translational modifications contribute to
PCC and mitotic catastrophe. There is precedence for the coupling of various histone post-
translational modifications. For example, Imai et al. (2000) described a NAD-dependent
histone deacetylase, Sir2, and Sir 2 proteins exhibit NAD-dependent mono-ADP-ribosyl-
transferase activity (Frye, 1999). The coordination of multiple histone modifications
appears to be involved in the regulation of immediate early gene expression (Clayton et al.,
2000). In particular, the coupling of histone H3 phosphorylation and acetylation appears to
play an important role in transcriptional regulation, particularly in response to factors thatengage the epidermal growth factor/MAPK signaling pathway (Clayton et al., 2000).
Figure 1 Changes in histone ribosylation precede cell death in TGHQ-treated LLC-PK1 cells. LLC-PK1 cells were
labeled with 100 Ci/ml [2,8- 3H] adenosine for 4 h and then treated with 400 M TGHQ for increasing periods of
time. Histones were extracted from these cells, and 55 g protein were electrophoretically resolved on a 13.5% SDS-
polyacrylamide gel. Gel transferred to a PVDF membrane and stained with Ponceau S; Panel A. Panel B shows the
corresponding autoradiograph. Lane a, untreated control cells; lane b, 5 min; lane c, 10 min; lane d, 20 min; lane e,
30 min; lane f, 30 min, control untreated cells; lane g, pretreated with 1mM 3-aminobenzamide for 15 min and then
co-treated with 400 M TGHQ for 30 min; and lane h, only 3-aminobenzamide-treated cells for 30 min.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
7/14
ROS-INDUCED HISTONE MODIFICATIONS 761
ROS-induced histone modifications: 2) ROS-induced histone H3phosphorylation is preferentially associated with hyperacetylated
histones. The short stretches of basic amino acids that tend to flank phosphoryla-
tion sites within the histone tails (see previous discussion) can undergo additional post-translational modifications, including acetylation and methylation. Acetylation sites in the
histone N terminal domain of H3 and H4 are lysine 9, 14, 18, 23, and 5, 8, 12, 16, respec-
tively. The dynamics of histone acetylation on transcriptionally active chromatin is
modulated by competing activities of various histone acetyltransferases and histone
deacetylases, which behave as transcriptional activators and repressors, respectively. To
elucidate the relationship between ROS-induced histone H3 phosphorylation and histone
acetylation, quiescent LLC-PK1 cells were exposed to 5mM sodium butyrate for 12h and32P-labeled for the final 4h. Treatment of butyrate-exposed LLC-PK1 cells with TGHQ
(Fig. 3, lanes c and d) for 30 min induced histone H3 phosphorylation. However, in butyrate-
treated cells, phosphorylation of histone H3 occurred preferentially on hyperacetylated
histones (Fig. 3, lane d). Furthermore, the Triton-acid urea gel revealed the ability ofTGHQ to induce the phosphorylation of constitutively hyperacetylated histone H4 (Fig, 3B,
Figure 2 Time course of TGHQ-induced histone H3 phosphorylation in LLC-PK1 cells that precedes celldeath. [32P]-Labeled LLC-PK1 cells were treated with 400 M TGHQ for increasing periods of time. Histones
were extracted from these cells, and 35 g protein were electrophoretically resolved on a 13.5% SDS-polyacrylamide.
Lane a, untreated control cells; lane b, 5 min; lane c, 10 min; lane d, 20 min; lane e, 30 min; lane f, 30 min,
control untreated cells; lane g, pretreated with 1mM 3-aminobenzamide for 15 min and then co-treated with 400 M
TGHQ for 30 min; and lane h, only 3-aminobenzamide-treated cells for 30 min. Panel A shows the Coomassie
Blue-stained gel. Panel B shows the corresponding autoradiograph.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
8/14
762 T. J. MONKS ET AL.
lane c) despite the fact that no hyperacetylated H4 protein is visible on the CoomassieBlue-stained gel (Fig. 3A, lane c). The results suggests that only a very small population
of acetylated histones are phosphorylated and that these can be distinguished from the
bulk histones by butyrate treatment. Interestingly, butyrate treatment shifted the target of
TGHQ-induced histone phosphorylation exclusively to histone H3. Hyperacteylated
(n=3/4) histone H4 was not phosphorylated in the combination of butyrate/TGHQ treated
cells (Fig. 3B, compare lane c [TGHQ only] with lane d [butyrate plus TGHQ]). The data
suggest that ROS- induced histone H3 kinases target butyrate sensitive histone H3 acety-
lation sites (or vice versa), which, in combination, may be sufficient to disrupt nucleo-
somes to facilitate access of the DNA repair machinery.
ROS-induced histone modifications: histone methylation. The role of
histone methylation is one of the least understood post-translational modifications affect-ing histones. Histone methylation is a relatively stable modification, with a slow turnover
Figure 3 TGHQ-induced histone H3 phosphorylation occurs in hyperacetylated histones. LLC-PK1 cells were pre-
treated with a hiostone deacetylase inhibitor, sodium butyrate (5mM) for 12 h, and then labeled with [ 32P]-orthophos-
phoric acid. Labeled cells were treated with 400M of TGHQ. Histones were extracted from these cells, and 70 g of
protein were electrophoretically resolved on a Triton-acid urea gel. Proteins were overloaded on Triton-acid urea gel to
see acetylated histone subtypes on Coomassie Blue-stained gel. Lane a, untreated control cells; lane b, butyrate-treated
control cells; lane c, TGHQ-treated cells for 30 min; and lane d, cells pretreated with butyrate and co-treated with
TGHQ for 30 min. Panel A shows the Coomassie Blue-stained gel. Panel B shows the corresponding autoradiograph.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
9/14
ROS-INDUCED HISTONE MODIFICATIONS 763
rate. The primary sites modified by methylation in histone H3 are lysines 4, 9, 27, 36
and in H4 lysine 20 (Jenuwein, 2006). Histone H3 can be trimethylated at each lysine
residue, whereas lysine 20 in H4 can only be dimethylated (Jenuwein, 2006). This fur-
ther mono-, di- or trimethylation of lysine residues provides another level of complexity
to this post-translational modification. Histone H4, which is slowly acetylated anddeacetylated, is also methylated in HeLa cells (Annunziato et al., 1995). Although his-
tone methylation and dynamic acetylation are not directly coupled, methylation of his-
tone H3 at lysine 4 occurs preferentially in a subpopulation that is preferentially
acetylated. To gain insight into the possible role of histone methylation in modifying
chromatin structure in response to ROS-induced DNA damage, LLC-PK1 cells were
labeled by 14C-methyl-methionine and exposed to 400 M of TGHQ for 30 min. No sig-
nificant changes in the level of histone H3 and H4 methylation were observed in
response to TGHQ (Fig. 4).
Figure 4 TGHQ-induced histone methylation in LLC-PK1 cells. LLC-PK1 cells were labeled with L-[Methyl-14C]
methionine and treated with 400 M of TGHQ. Histones were extracted from these cells, and 45 g of protein
were electrophoretically resolved on a 13.5% SDS-polyacrylamide gel. Lane a, untreated control cells; lane b,
TGHQ-treated cells for 30 min; lane c, TGHQ-treated cells for 60 min; and lane c, control untreated cells after 60 min.
Panel A shows the Coomassie Blue-stained gel. Panel B shows the corresponding autoradiograph.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
10/14
764 T. J. MONKS ET AL.
CONCLUSION
In conclusion, ROS-induced changes in the post-translational modification of
histones are not random in nature. Rather, the changes likely represent the concerted
establishment of a template conducive to the recruitment and retention of the DNA repairmachinery. Moreover, our data, and that of others, indicate that responses to stress, includ-
ing oxidative stress, that usually results in oncotic cell death (and tissue necrosis) can be
manipulated, at the genetic and pharmacological level, to produce a potentially favorable
(survivable) tissue response. Basic knowledge of the mechanisms by which ROS induce
cell death may yield strategies for clinical interventions in the many pathologies in which
ROS play a prominent role.
ABBREVIATIONS
3-AB 3-aminobenzamide
ERK extracellular signal regulated protein kinase
MAPK mitogen-activated protein kinase
PARP of poly(ADP-ribose)polymerase
PCC premature chromatin condensation
ROS reactive oxygen species
TGHQ 2,3,5-tris-(glutathion-S-yl)hydroquinone.
ACKNOWLEDGMENTS
The work conducted in the authors laboratory was supported by awards from the
National Institutes of Health (DK 59491 and P30 ES 06694).
REFERENCES
Adamietz, P, Rudolph, A. (1984). ADP-Ribosylation of nuclear proteins in vivo. Identification of
histone H2B as a major acceptor for mono- and poly(ADP-ribose) in dimethyl sulfate-treated
hepatoma AH7974 cells.J. Biol. Chem. 259:68416846.
Ajiro, K., Nishimoto, T. (1985). Specific site of histone H3 phosphorylation related to the mainte-
nance of premature chromosome condensation. Evidence for catalytically induced inter-
change of the subunits.J. Biol. Chem. 26:1537915381.
Ajiro, K., Nishimoto, T., Takahashi, T. (1983). Histone H1 and H3 phosphorylation during prema-ture chromosome condensation in a temperature-sensitive mutant (tsBN2) of baby hamster
kidney cells.J. Biol. Chem. 258:45344538.
Andreoli, S. P., Mallett, C. P. (1997). Disassociation of oxidant-induced ATP depletion and DNA
damage from early cytotoxicity in LLC-PK1 cells.Am. J.Physiol. 272:F729735.
Ankarcrona, M., Dypbuki, J. M., Bonfoco, E., Zhivotovsky, B., Orrenius, S., Lipton S. A., Nicotera,
P. (1995). Glutamate-induced neuronal death: a succession of necrosis or apoptosis depend-
ing on mitochondrial function.Neuron 15:961973.
Annunziato, A. T., Eason, M. B., Perry, C. A. (1995). Relationship between methylation and
acetylation of arginine-rich histones in cycling and arrested HeLa cells. Biochemistry 34:
29162924
Bhat, N.R., Zhang P. (1999). Hydrogen peroxide activation of multiple mitogen-activated protein
kinases in an oligodendrocyte cell line: role of extracellular signal-regulated kinase in hydro-
gen peroxide-induced cell death.J. Neurochem. 72:112119.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
11/14
ROS-INDUCED HISTONE MODIFICATIONS 765
Burkart, V., Wang, Z. Q., Radons, J., Heller, B., Herceg, Z., Stingl, L., Wagner, E. F., Kolb, H.
(1999). Mice lacking the poly(ADP-ribose) polymerase gene are resistant to pancreatic beta-
cell destruction and diabetes development induced by streptozocin.Nat. Med. 5:314319.
Chadee, D. N., Hendzel, M. J., Tylipski, C. P., Allis, C. D., Bazett-Jones, D. P., Wright, J. A., Davie,
J. R. (1999). Increased Ser-10 phosphorylation of histone H3 in mitogen-stimulated andoncogene-transformed mouse fibroblasts.J. Biol. Chem. 274:2491424920.
Chatterjee, P. K., Cuzzocrea, S., Thiemermann, C. (1999). Tempol, a membrane-permeable radical
scavenger, reduces oxidant stress-mediated renal dysfunction and injury in the rat. Kidney Int.
56:973984.
Cheung, P., Allis, C.D., Sassone-Corsi, P. (2000). Signaling to chromatin through histone modifica-
tions. Cell 103:263271
Clayton, Al., Rose, S., Barratt, M. J., Mahadevan, L. C. (2000). Phosphoacetylation of histone H3
on c-fos- and c-jun-associated nucleosomes upon gene activation.EMBO J. 19:37143726.
Cobb, M.H. (1999). MAP kinase pathways. Prog. Biophys. Mol. Biol. 71:479500.
Coco-Martin, J. M., Begg, A. C. (1997). Detection of radiation-induced chromosome aberrations
using fluorescence in situ hybridization in drug-induced premature chromosome condensa-
tions of tumour cell lines with different radiosensitivities.Inter. J. Rad. Biol. 71:265273.
Cristovao L., Rueff, J. (1996). Effect of a poly(ADP-ribose) polymerase inhibitor on DNA breakage
and cytotoxicity induced by hydrogen peroxide and gamma-radiation. Terat. Carcinog.
Mutagenesis 16:219227.
DAmours, D., Desnoyers, S., DSilva, I., Poirier, G. G. (1999). Poly(ADP-ribosyl)ation reactions in
the regulation of nuclear functions.Biochem. J. 342:249268.
Daum, G., Levkau, B., Chamberlain, N. L., Wang, Y., Clowes, A. W. (1998). The mitogen-activated
protein kinase pathway contributes to vanadate toxicity in vascular smooth muscle cells.Mol.
Cell Biochem. 183:97103.
Davis, F. M., Tsao, T. Y., Fowler, S. K., Rao, P. N. (1983). Monoclonal antibodies to mitotic cells.
Proc. Natl. Acad. Sci. USA 80:29262930.
Eliasson, M. J., Sampei, K., Mandir, A. S., Hurn, P. D., Traystman, R. J., Bao, J., Pieper, A., Wang,Z. Q., Dawson, T. M., Snyder, S. H., Dawson, V. L. (1997). Poly(ADP-ribose) polymerase
gene disruption renders mice resistant to cerebral ischemia.Nat. Med. 3:10891095.
Endres, M., Wang, Z. Q., Namura, S., Waeber, C., Moskowitz, M. A. (1997). Ischemic brain injury is medi-
ated by the activation of poly(ADP-ribose)polymerase.J. Cereb. Blood Flow Metab.17:11431151.
Filipovic, D. M., Meng, X., Reeves, W. B. (1999). Inhibition of PARP prevents oxidant-induced
necrosis but not apoptosis in LLC-PK1 cells.Am. J. Physiol. 277:F428436.
Frye, R. A. (1999). Characterization of five human cDNAs with homology to the yeast SIR2 gene:
Sir2-like proteins (sirtuins) metabolize NAD and may have protein ADP-ribosyltransferase
activity.Biochem. Biophy. Res. Com. 260:273279.
Goto, H., Tomono, Y., Ajiro, K., Kosako, H., Fujita, M., Sakurai, M., Okawa, K., Iwamatsu, A.,
Okigaki, T., Takahashi, T., Inagaki, M. (1999). Identification of a novel phosphorylation
site on histone H3 coupled with mitotic chromosome condensation. J. Biol. Chem.
274:2554325549.
Guo, X. W., Thng, J. P. H., Swank, R. A., Anderson, H. J., Tudan, C., Bradbury, E. M., Roberge,
M. (1995). Chromosome condensation induced by fostriecin does not require p34cdc2 kinase
activity and histone H1 hyperphosphorylation, but is associated with enhanced histone H2A
and H3 phosphorylation.EMBO J.14:976985.
Gurley, L. R., DAnna, J. A., Barham, S. S., Deaven, L. L., Tobey, R. A. (1978). Histone phosphory-
lation and chromatin structure during mitosis in Chinese hamster cells.E.J. Biochem. 84:115.
Ha, H. C., Snyder, S. H. (1999). Poly(ADP-ribose) polymerase is a mediator of necrotic cell death
by ATP depletion. Proc. Natl. Acad. Sci. 96:1397813982.
Hendzel, M. J. (1997). Mitosis-specific phosphorylation of histone H3 initiates primarily within
pericentromeric heterochromatin during G2 and spreads in an ordered fashion coincident withmitotic chromosome condensation. Chromosoma 106:348360.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
12/14
766 T. J. MONKS ET AL.
Imai, S., Armstrong, C. M., Kaeberlein, M., Guarente, L. (2000). Transcriptional silencing and
longevity protein Sir2 is an NAD-dependent histone deacetylase.Nature 403:795800.
Jenuwein, T. (2006). The epigenetic magic of histone lysine methylation. FEBS J. 273:31213135.
Jia, Z., Person, M. D., Shen, J., Hensley, S. C., Stevens, J. L., Monks, T .J., Lau, S. S. (2004).
GRP78/Bip is essential for 11-deoxy-16,16-dimethylprostaglandin mediated cytoprotectionin renal epithelial cells.Am. J. Physiol. Renal Physiol. 287:F1113F1122.
Jimenez, L. A., Zanella, C., Fung, H., Janssen, Y. M., Vacek, P., Charland, C., Goldberg, J., Moss-
man, B. T. (1997). Role of extracellular signal-regulated protein kinases in apoptosis by
asbestos and H2O2.Am. J. Physiol. 273:L10291035.
Kai R., Sekiguchi T., Yamashita K., Sekiguchi M., Nishimoto, T. (1983). Transformation of temperature-
sensitive growth mutant of BHK21 cell line to wild-type phenotype with hamster and mouse
DNA. Somatic Cell Genet. 9:673680
Kerr, J. F., Wyllie, A. H., Currie, A. R. (1972). Apoptosis: A basic biological phenomenon with
wide-ranging implications in tissue kinetics.Br. J. Cancer26:239257.
Koshland, D., Strunnikov, A. (1996). Mitotic chromosome condensation. Ann. Rev. Cell Biol.
12:305333.
Langan, T. A., Gautier, J., Lohka, M., Hollingsworth, R., Moreno, S., Nurse, P., Maller, J., Sclafani,
R. A. (1989). Mammalian growth-associated H1 histone kinase: a homolog of cdc2+/CDC28
protein kinases controlling mitotic entry in yeast and frog cells.Mol. Cell. Biol. 9:38603868.
Mackey, M. A., Zhang, X. F., Hunt, C. R., Sullivan, S. J., Blum, J., Laszlo, A., Roti, J. L. (1996).
Uncoupling of M-phase kinase activation from the completion of S-phase by heat shock.
Cancer Res. 56:17701774.
Mahadevan, L. C., Willis, A. C., Barrah, M. J. (1991). Rapid histone H3 phosphorylation in response to
growth factors, phorbol esters, okadaic acid, and protein synthesis inhibitors. Cell 65:775783
Malik, N., Miwa, M., Sugimura, T., Thraves, P., Smulson, M. (1983). Immunoaffinity fraction-
ation of the poly(ADP-ribosylated domains of chromatin. Proc. Natl. Acad. Sci. USA 80:
25542558
Masutani, M., Suziki, H., Kamada, N., Watanabe, M., Ueda, O., Nozaki, T., Jishage, K., Watanabe, T.,Sugimoto, T., Nakagama, H., Ochiya, T., Sugimura, T. (1999). Poly(ADP-ribose) polymerase
gene disruption conferred mice resistant to streptozotocin-induced diabetes. Proc. Nat. Acad.
Sci. USA96:23012304.
Nicotera, P., Ankacrona, M., Bonfocco, E., Orrenius, S., Lipton, S. A. (1997). Neuronal necrosis and
apoptosis: Two distinct events induced by exposure to glutamate or oxidatuve stress. Adv.
Neurol. 72:95101.
Novak, B., Tyson, J. J. (1997). Modeling the control of DNA replication in fission yeast. Proc. Natl.
Acad. Sci. USA 94:91479152.
Oliver, F. J., Menissier-de Murcia, J., Nacci, C., Decker, P., Andriantsitohaina, R., Muller, S., de la
Rubia, G., Stoclet, J. C., de Murcia, G. (1999). Resistance to endotoxic shock as a conse-
quence of defective NF-kappaB activation in poly (ADP-ribose) polymerase-1 deficient mice.
EMBO J. 18:44464454.
Pieper, A.A., Verma A., Zhang J., Snyder S. H. (1999). Poly (ADP-ribose) polymerase, nitric oxide
and cell death. Trends Pharmacol. Sci. 20:171181.
Ramachandiran, S., Huang, Q., Dong, J., Lau, S. S., Monks, T. J. (2002). Mitogen activated protein
kinases contribute to reactive oxygen species-induced cell death in renal proximal tubule
epithelial cells. Chem. Res. Toxicol. 15:16351642,.
Realini, C. A., Althaus, F. R. (1992). Histone shuttling by poly(ADP-ribosylation). J. Biol. Chem.
267:1885818865.
Rivera, M. I., Jones, T. W., Lau, S. S., Monks, T. J. (1994). Early morphological and biochemical
changes during 2-Br-(diglutathion-S-yl)hydroquinone-induced nephrotoxicity. Toxicol. Appl.
Pharmacol. 128:239250.
Roth, S. Y., Allis, C. D.(1992). Chromatin condensation: does histone H1 dephosphorylation play arole? Trends Biochem. Sci. 17:9398.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
13/14
ROS-INDUCED HISTONE MODIFICATIONS 767
Sauve, D. M., Anderson, H. J., Ray, J. M., James, W. M., Roberge, M. (1999). Phosphorylation-
induced rearrangement of the histone H3 NH2-terminal domain during mitotic chromosome
condensation.J. Cell Biol. 145:225235.
Shen, X., Yu, L., Weir, J. W., Gorovsky, M. A., (1995). Linker histones are not essential and affect
chromatin condensation in vivo. Cell 82:4756.Szabo, C., Lim, L. H. K., Cuzzocrea, S., Getting, S. J., Zingarelli, B., Flower, R. J., Salzman, A. L.,
Perretti, M. (1997). Inhibition of poly(ADP-ribose) synthetase attenuates neutrophil recruit-
ment and exerts antiinflammatory effects.J. Exp. Med.186:10411049.
Thiriet, C., Hayes, J. J. (2005). Chromatin in need of a fix: phosphorylation of H2AX connects chro-
matin to DNA repair.Molec. Cell 18:617622.
Thng, J. P. H., Guo, X.-W., Swank, R. A., Crissman, H. A., Bradbury, E. M. (1994). Inhibition of
histone phosphorylation by staurosporine leads to chromosome decondensation. J. Biol.
Chem. 269:95689573.
Tikoo, K., Lau, S. S., Monks, T. J. (2001). Histone H3 phosphorylation is coupled to poly(ADP-
ribosylation) and reactive oxygen species-induced cell death in renal proximal tubular epithe-
lial cells.Molec. Pharmacol. 60:394402.
van den Brink, M. R., Kapeller, R., Pratt, J. C., Chang, J. H., Burakoff, S. J. (1999). The extracellu-
lar signal-regulated kinase pathway is required for activation-induced cell death of T cells.J.
Biol. Chem. 274:1117811185.
van Holde, K. E. (1989). Chromatin. New York: Springer-Verlag New York Inc.
van Hooser, A., Goodrich, D. W., Allis, C. D., Brinkley, B. R., Mancini, M. A. (1998). Histone H3
phosphorylation is required for the initiation, but not maintenance, of mammalian chromo-
some condensation.J. Cell Sci. 111:34973506.
Walisser, J. A., Thies, R. L. (1999). Poly(ADP-ribose) polymerase inhibition in oxidant-stressed
endothelial cells prevents oncosis and permits caspase activation and apoptosis. Expt. Cell
Res. 251:401413.
Wei, Y., Yu, L., Bowen, J., Gorovsky, M. A., Allis, C. D. (1999). Phosphorylation of histone H3 is
required for proper chromosome condensation and segregation. Cell 97:99109.Wolffe, A. P., Hayes J. J. (1999). Chromatin disruption and modification.Nucleic Acid Res. 27:711720.
Wright, J. H., Munar, E., Jameson, D. R., Andreassen, P. R., Margolis, R. L., Seger, R., Krebs, E. G.
(1999). Mitogen-activated protein kinase kinase activity is required for the G(2)/M transition
of the cell cycle in mammalian fibroblasts. Proc. Natl. Acad. Sci. USA 96:1133511340.
Wyllie, A. H., Kerr, J. F., Currie, A. R. (1980). Cell death: the significance of apoptosis. Int. Rev.
Cytol. 68:251306.
Zingarelli, B., Salzman, A. L., Szabo, C. (1998). Genetic disruption of poly (ADP-ribose) synthetase
inhibits the expression of P-selectin and intercellular adhesion molecule-1 in myocardial
ischemia/reperfusion injury. Cir. Res. 83:8594.
Zingarelli, B., Szaso, C., Salzman, A. L. (1999). Blockade of poly(ADP-ribose) synthetase inhibits
neutrophil recruitment, oxidant generation, and mucosal injury in murine colitis.
Gastroenterology116:335345.
Forpe
rsonaluseonly.
-
8/3/2019 Ros_induced Histone Modification
14/14
Forpe
rsonaluseonly.