rowan university spring semester mrs. patricia sidelsky 2008 rowan university spring semester mrs....
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Introduction to Introduction to Molecular GeneticsMolecular Genetics
Introduction to Introduction to Molecular GeneticsMolecular Genetics
Rowan UniversitySpring Semester
Mrs. Patricia Sidelsky2008
Rowan UniversitySpring Semester
Mrs. Patricia Sidelsky2008
Regulatory RNAsRegulatory RNAs
http://www.dnalc.org/ddnalc/dna_today/episodes/5/episode5.html
Molecular GeneticsMolecular Genetics
Molecular genetics and molecular biology are almost synonomous terms
A “ hybrid” science The change in the understanding
of life has led to a revolution in the field of Biology
Molecular genetics and molecular biology are almost synonomous terms
A “ hybrid” science The change in the understanding
of life has led to a revolution in the field of Biology
Molecular GeneticsMolecular Genetics
The result of an amalgam of a variety of physical and biological sciences
Genetics, microbiology, biochemistry, physical chemistry, and physics
Driven by the need to understand the underlying principles of life and the reactions of life
The result of an amalgam of a variety of physical and biological sciences
Genetics, microbiology, biochemistry, physical chemistry, and physics
Driven by the need to understand the underlying principles of life and the reactions of life
Max DelbruckIlustrates the blend in scientific
disciplines
Max DelbruckIlustrates the blend in scientific
disciplines German immigrant Originally trained in physical
chemistry and theoretical physics Converted to molecular genetics Collaborated with Salvador Luria
on the characterization and genetics of bacteriophages
German immigrant Originally trained in physical
chemistry and theoretical physics Converted to molecular genetics Collaborated with Salvador Luria
on the characterization and genetics of bacteriophages
Molecular Genetics - Origins
Molecular Genetics - Origins
Thomas Hunt Morgan- Columbia University
The physical nature of the gene A discovery in 1910 changed the course of
genetics Developed experimental model for the
study of modern genetics- the fruit fly – Drosophila melanogaster
The white eyed male mutant appeared in a culture of flies in the fly room and this was the beginning of a search for mutants
Thomas Hunt Morgan- Columbia University
The physical nature of the gene A discovery in 1910 changed the course of
genetics Developed experimental model for the
study of modern genetics- the fruit fly – Drosophila melanogaster
The white eyed male mutant appeared in a culture of flies in the fly room and this was the beginning of a search for mutants
White and Wild typeWhite and Wild type
Easy to cultivate Prolific progeny Small and
inexpensive Large polytene
chromosomes Diploid number 8 Many mutations
Easy to cultivate Prolific progeny Small and
inexpensive Large polytene
chromosomes Diploid number 8 Many mutations
Hermann Joseph MullerHermann Joseph Muller
X rays cause mutations
Produced a variety of flies with phenotypes such asvestigial
X rays cause mutations
Produced a variety of flies with phenotypes such asvestigial
Alfred Sturdevant produced the first genetic map from linkage
experiments
Alfred Sturdevant produced the first genetic map from linkage
experiments Genes were
related to position on the chromosome map
Mutants were related to differences in the appearance of the polytene chromosomes due to staining
Genes were related to position on the chromosome map
Mutants were related to differences in the appearance of the polytene chromosomes due to staining
DNA as Genetic MaterialTransformation
DNA as Genetic MaterialTransformation
Griffith in 1928 observed the change of non-virulent organisms into virulent ones as a result of “transformation” MacLeod and McCarty in 1944
showed that the transforming principle was DNA
Griffith in 1928 observed the change of non-virulent organisms into virulent ones as a result of “transformation” MacLeod and McCarty in 1944
showed that the transforming principle was DNA
Figure 11.1
Transforming principleTransforming principle
Avery, McLeod, and McCartyAvery, McLeod, and McCarty
Proof of the Transforming Principle
Proof of the Transforming Principle
Chemical analysis of sample containing the transforming principle showed that the major component was a deoxyribose -containing nucleic acid
Physical measurements show that the sample contained a highly viscous substance having the properties of DNA
Incubatyion with trypsin or chymotrypsin, enzymes that catalzye protein hydrolysis or with ribonuclease( RNase), an enzyme that catalyzes RNA hydrolysis did not affect the transforming principle
Incubation with DNase, an enzyme that catalyzes DNA hydrolysis inactivates the transforming principle
Chemical analysis of sample containing the transforming principle showed that the major component was a deoxyribose -containing nucleic acid
Physical measurements show that the sample contained a highly viscous substance having the properties of DNA
Incubatyion with trypsin or chymotrypsin, enzymes that catalzye protein hydrolysis or with ribonuclease( RNase), an enzyme that catalyzes RNA hydrolysis did not affect the transforming principle
Incubation with DNase, an enzyme that catalyzes DNA hydrolysis inactivates the transforming principle
TransfectionTransfection
DNA as Genetic Material( of viruses)DNA as Genetic Material( of viruses) Hershey and Chase, 1952
used bacteriophage T2 infection as model DNA labeled with 32P;protein coat labeled
with 35S Only DNA entered cell but both new DNA
and protein coats synthesized and incorporated into new viruses indicating that DNA had the genetic information for synthesis of both of these viral components
Hershey and Chase, 1952 used bacteriophage T2 infection as model DNA labeled with 32P;protein coat labeled
with 35S Only DNA entered cell but both new DNA
and protein coats synthesized and incorporated into new viruses indicating that DNA had the genetic information for synthesis of both of these viral components
T2 phageT2 phage
Chargaff’s RuleChargaff’s Rule
Analyzed DNA from a variety of sources and improved both the separation and quantitation of the DNA bases
[C] = [G] and [A] = [T] Today this is applied to the G=C or
G.C pairs. Scientists describe the G+C content in organisms
Analyzed DNA from a variety of sources and improved both the separation and quantitation of the DNA bases
[C] = [G] and [A] = [T] Today this is applied to the G=C or
G.C pairs. Scientists describe the G+C content in organisms
G+CG+C
Now used as a means of classifying bacteria
G+C content varies in Gram Positive Bacteria
G+C content ranges from .27 in Clostridium to .76 for Sarcina
Most Eukaryotes have a value close to 50%
Now used as a means of classifying bacteria
G+C content varies in Gram Positive Bacteria
G+C content ranges from .27 in Clostridium to .76 for Sarcina
Most Eukaryotes have a value close to 50%
G+C contentG+C content
G+C content = [G] +[C] / all bases in DNA
G+C content = [G] +[C] / all bases in DNA
The Race for the Double Helix
The Race for the Double Helix
Rosalind Franklin and Maurice Wilkins at Kings College
Studied the A and B forms of DNA
Rosalind’s famous x-ray crystallography picture of the B form held the secret, but she didn’t realize its significance
Rosalind Franklin and Maurice Wilkins at Kings College
Studied the A and B forms of DNA
Rosalind’s famous x-ray crystallography picture of the B form held the secret, but she didn’t realize its significance
Rosalind FranklinRosalind Franklin
Technically and scientifically a gifted scientist
Focused on the A form of DNA and missed the double helix
Technically and scientifically a gifted scientist
Focused on the A form of DNA and missed the double helix
The Race for the Double Helix
The Race for the Double Helix
Watson and Crick formed an unlikely partnership
A 22 year old PhD and a thirty + PhD “want to be” embarked on a model making venture at Cambridge
Used the research of other scientists to determine the nature of the double helix
Watson and Crick formed an unlikely partnership
A 22 year old PhD and a thirty + PhD “want to be” embarked on a model making venture at Cambridge
Used the research of other scientists to determine the nature of the double helix
Nucleic Acid CompositionDNA and RNA
Nucleic Acid CompositionDNA and RNA
DNA – Basic Moleculesa. Purines – adenine and guanineb. Pyrmidines – cytosine and thyminec. Sugar – Deoxyribosed. Phosphate phosphate group
http://www.dnai.org/index.htm - DNA background
DNA – Basic Moleculesa. Purines – adenine and guanineb. Pyrmidines – cytosine and thyminec. Sugar – Deoxyribosed. Phosphate phosphate group
http://www.dnai.org/index.htm - DNA background
NucleotidesNucleotides
Sugar Phosphate Base
Adenine and guanine are purines
Thymine and Cytosine are pyrimidines
Sugar Phosphate Base
Adenine and guanine are purines
Thymine and Cytosine are pyrimidines
Deoxyribose in DNADeoxyribose in DNA
Double HelixDouble Helix Two polynucleotide strands joined by
phosphodiester bonds( backbone) Complementary base pairing in the center of the
moleculeA= T and C G – base pairing. Two hydrogen
bonds between A and T and three hydrogen bonds between C and G.
A purine is bonded to a complementary pyrimidine Bases are attached to the 1’ C in the sugar by a
glycosidic linkage At opposite ends of the strand – one strand has the
3’hydroxyl, the other the 5’ hydroxyl of the sugar molecule
Two polynucleotide strands joined by phosphodiester bonds( backbone)
Complementary base pairing in the center of the molecule
A= T and C G – base pairing. Two hydrogen bonds between A and T and three hydrogen bonds between C and G.
A purine is bonded to a complementary pyrimidine Bases are attached to the 1’ C in the sugar by a
glycosidic linkage At opposite ends of the strand – one strand has the
3’hydroxyl, the other the 5’ hydroxyl of the sugar molecule
DNA StructureDNA Structurehttp://www.johnkyrk.com/DNAanatomy.html - DNA structure
Double helix( continued)Double helix( continued)
The double helix is right handed – the chains turn counter-clockwise.
As the strand turn around each other they form a major and minor groove.
The is a distance of .34nm between each base
The distance between two major grooves is 3.4nm or 10 bases
The diameter of the strand is 2nm
The double helix is right handed – the chains turn counter-clockwise.
As the strand turn around each other they form a major and minor groove.
The is a distance of .34nm between each base
The distance between two major grooves is 3.4nm or 10 bases
The diameter of the strand is 2nm
Complementary Base Pairing
Complementary Base Pairing
Adenine pairs with Thymine
Cytosine pairs with Guanine
Adenine pairs with Thymine
Cytosine pairs with Guanine
The end view of DNAThe end view of DNA
This view shows the double helix and the outer backbone with the bases in the center.
An AT base pair is highlighted in white
This view shows the double helix and the outer backbone with the bases in the center.
An AT base pair is highlighted in white
Double helix and anti-parallel
Double helix and anti-parallel
DNA is a directional molecule The complementary strands run in
opposite directions One strand runs 3’-5’ The other strand runs 5’ to 3’( the end of the 5’ has the
phosphates attached, while the 3’ end has a hydroxyl exposed)
DNA is a directional molecule The complementary strands run in
opposite directions One strand runs 3’-5’ The other strand runs 5’ to 3’( the end of the 5’ has the
phosphates attached, while the 3’ end has a hydroxyl exposed)
Prokaryote DNAProkaryote DNA
Tightly coiled Coiling maintained by molecules similar to
the coiling in eukaryotes Circular ds molecule Borrelia burgdoferi ( Lyme Disease )has a
linear chromosome Other bacteria have multiple chromosomes Agrobacterium tumefaciens ( Produces
Crown Gall disease in plants) has both circular and linear
Tightly coiled Coiling maintained by molecules similar to
the coiling in eukaryotes Circular ds molecule Borrelia burgdoferi ( Lyme Disease )has a
linear chromosome Other bacteria have multiple chromosomes Agrobacterium tumefaciens ( Produces
Crown Gall disease in plants) has both circular and linear
Prokaryote chromosomes
Prokaryote chromosomes
Circular DNACircular DNA
MitochondriaMitochondria
Mitochondrial DNA( mt DNA)
16,500 base pairs 37 genes 24 encode RNA Defects lead to
diseases that are related to energy
Mitochondrial DNA( mt DNA)
16,500 base pairs 37 genes 24 encode RNA Defects lead to
diseases that are related to energy
Chloroplast DNAChloroplast DNA
Chloroplast DNA( cp DNA) is larger than mitochondrial DNA
195,000 bp Genes for photosynthesis Cp ribosomal RNAs
Chloroplast DNA( cp DNA) is larger than mitochondrial DNA
195,000 bp Genes for photosynthesis Cp ribosomal RNAs
Heavy and Light NMeselson and Stahl experiment
Heavy and Light NMeselson and Stahl experiment
In the first generation of E. coli, all the DNA was heavy
After one generation, the DNA was half heavy and half light
In the first generation of E. coli, all the DNA was heavy
After one generation, the DNA was half heavy and half light
DNA Replication –Semi Conservative
DNA Replication –Semi Conservative
DNA ReplicationDNA Replication
DNA opens at an Ori ( origin of replication)
Combination of many enzymes coordinate the replicative process
Template strand used to make the copy
DNA polymerases read the template and match the complementary base
DNA opens at an Ori ( origin of replication)
Combination of many enzymes coordinate the replicative process
Template strand used to make the copy
DNA polymerases read the template and match the complementary base
Degradation of DNADegradation of DNA
Endonucleases cleave DNA and RNA, by cutting between individual bonds
Some endonucleases cleave one strand some cleave both strands at a specific point or sequence( restriction nucleasess)
Endonucleases cleave DNA and RNA, by cutting between individual bonds
Some endonucleases cleave one strand some cleave both strands at a specific point or sequence( restriction nucleasess)
The Flow of Genetic Information
The Flow of Genetic Information
from one generation to the next DNA stores genetic information Information is duplicated by
replication and is passed on to next generation
from one generation to the next DNA stores genetic information Information is duplicated by
replication and is passed on to next generation
The Flow of Genetic Information within a single
cell
The Flow of Genetic Information within a single
cell
Process called gene expression DNA divided into genes
transcription yields a ribonucleic acid (RNA) copy of specific genes
translation uses information in messenger RNA (mRNA) to synthesize a polypeptide Also involves activities of transfer RNA (tRNA)
and ribosomal RNA (rRNA)
Process called gene expression DNA divided into genes
transcription yields a ribonucleic acid (RNA) copy of specific genes
translation uses information in messenger RNA (mRNA) to synthesize a polypeptide Also involves activities of transfer RNA (tRNA)
and ribosomal RNA (rRNA)
Flow of Genetic Information in Cells
Flow of Genetic Information in Cells
Nucleic Acid StructureRibonucleic Acid (RNA)Nucleic Acid StructureRibonucleic Acid (RNA)
Polymer of nucleotidesContains the bases
adenine, guanine, cytosine and uracil
Sugar is riboseMost RNA molecules are
single stranded
Polymer of nucleotidesContains the bases
adenine, guanine, cytosine and uracil
Sugar is riboseMost RNA molecules are
single stranded
RNARNA
Types of RNAa. Messengerb. Transferc. Ribosomald. micro RNAs ( regulatory RNAs)
Types of RNAa. Messengerb. Transferc. Ribosomald. micro RNAs ( regulatory RNAs)
Messenger RNAMessenger RNA
16s rRNA16s rRNA
Ribosomal RNARibosomal RNA
tRNAtRNA
RNA virusesRNA viruses
Reoviruses Retroviruses Enteroviruses
Reoviruses Retroviruses Enteroviruses
Genomics of RNA virusesGenomics of RNA viruses
Genomes - + RNA - RNA segmented RNA Ds RNA
Genomes - + RNA - RNA segmented RNA Ds RNA
Polio virusPolio virus
Polio Virus- + ss RNA virus Polio Virus- + ss RNA virus
ViroidsViroids Infectious agents that causes
disease in higher plants Small circular loops of RNA The viroid RNA is infectious and
its is not surrounded by a capsid Viroids RNA replicates
autonomously
Infectious agents that causes disease in higher plants
Small circular loops of RNA The viroid RNA is infectious and
its is not surrounded by a capsid Viroids RNA replicates
autonomously
ViroidsViroids
PSTV Potato SpindleTuber Viroid
PSTV Potato SpindleTuber Viroid
Proteins are polymersProteins are polymers
Proteins are polymers of amino acids. They are molecules with diverse structures and functions.
Polymers are made up of units called monomers
The monomers in proteins are the 20 amino acids
Proteins are polymers of amino acids. They are molecules with diverse structures and functions.
Polymers are made up of units called monomers
The monomers in proteins are the 20 amino acids
Protein FactsProtein Facts
Proteins: Polymers of Amino Acids Proteins are polymers of amino acids.
They are molecules with diverse structures and functions.
Each different type of protein has a characteristic amino acid composition and order.
Proteins range in size from a few amino acids to thousands of them.
Folding is crucial to the function of a protein and is influenced largely by the sequence of amino acids.
Proteins: Polymers of Amino Acids Proteins are polymers of amino acids.
They are molecules with diverse structures and functions.
Each different type of protein has a characteristic amino acid composition and order.
Proteins range in size from a few amino acids to thousands of them.
Folding is crucial to the function of a protein and is influenced largely by the sequence of amino acids.
Proteins: Polymers of Amino Acids
Proteins: Polymers of Amino Acids
Each different type of protein has a characteristic amino acid composition and order.
Proteins range in size from a few amino acids to thousands of them.
Folding is crucial to the function of a protein and is influenced largely by the sequence of amino acids.
Each different type of protein has a characteristic amino acid composition and order.
Proteins range in size from a few amino acids to thousands of them.
Folding is crucial to the function of a protein and is influenced largely by the sequence of amino acids.
Proteins are complex molecules
Proteins are complex molecules
They have levels of structure Structure based upon the
sequence of the amino acids
They have levels of structure Structure based upon the
sequence of the amino acids
Polar side chainsPolar side chains
Non Polar Hydrophobic side chains
Non Polar Hydrophobic side chains
Electrical charged hydrophilic
Electrical charged hydrophilic
Function of Proteins - continued
Function of Proteins - continued
Enzymes – Biological catalysts Transport of small molecules – Albumin
and haptoglobin Transport of oxygen – hemoglobin and
myoglobin Membrane proteins – to assist in support Channels in membranes – to allow the
passage of molecules or ions Electron carriers in electron transport in
the production of ATP
Enzymes – Biological catalysts Transport of small molecules – Albumin
and haptoglobin Transport of oxygen – hemoglobin and
myoglobin Membrane proteins – to assist in support Channels in membranes – to allow the
passage of molecules or ions Electron carriers in electron transport in
the production of ATP
Functions( continued)iFunctions( continued)i
Clotting proteins Immune proteins to fight infectious
agents Histones – DNA binding proteins Toxins to repel or kill other organisms Bacteriocins – molecules produced by
bacteria against bacteria
Clotting proteins Immune proteins to fight infectious
agents Histones – DNA binding proteins Toxins to repel or kill other organisms Bacteriocins – molecules produced by
bacteria against bacteria
Functions of proteinsFunctions of proteins
Hormones – Growth hormone Receptors – to Receive information so that
cell can communicate with other cells Neurotransmitters – messenger molecules
– to send information between neurons Cytoskeleton – actin, myosin, and
collagen – the structure of connective tissue and muscles
Antibodies – Immunoglobulins to fight disease
Hormones – Growth hormone Receptors – to Receive information so that
cell can communicate with other cells Neurotransmitters – messenger molecules
– to send information between neurons Cytoskeleton – actin, myosin, and
collagen – the structure of connective tissue and muscles
Antibodies – Immunoglobulins to fight disease
Four levels of Protein Structure
Four levels of Protein Structure
There are four levels of protein structure: primary, secondary, tertiary, and quaternary.
The precise sequence of amino acids is called its primary structure.
The peptide backbone consists of repeating units of atoms: N—C—C—N—C—C.
Enormous numbers of different proteins are possible.
There are four levels of protein structure: primary, secondary, tertiary, and quaternary.
The precise sequence of amino acids is called its primary structure.
The peptide backbone consists of repeating units of atoms: N—C—C—N—C—C.
Enormous numbers of different proteins are possible.
The causes of Tertiary structure
The causes of Tertiary structure