short overview of chemspider at drexel university

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ChemSpider – Building a ChemSpider – Building a Structure Centric Community Structure Centric Community for Chemists for Chemists Antony Williams Antony Williams Drexel University August 2008 Drexel University August 2008

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This presentation was written to deliver before the live overview of CHemSPider. The live presentation is captured here on video: http://www.chemspider.com/blog/my-full-presentation-at-drexel-university.html

TRANSCRIPT

  • 1. ChemSpider Building a Structure Centric Community for Chemists Antony Williams Drexel University August 2008

2. ChemSpider Data

  • The database PRESENTLY contains > 21.5 million compounds obtained from
    • Chemical vendors
    • Publishers
    • Commercial Database Vendors
    • US and international patents
    • Structure aggregators
    • Scraped from websites
    • Deposited by users

3. Common Questions Asked of Chemspider

  • What is the structure of insert name?
  • What is the name of insert structure?
  • Where can I find information about insert name?
  • Where can I buy some insert name
  • Where can I find more information about insert name
  • What is the insert property of insert name

4. Tell me about Xanax.. 5. Tell me about Xanax 6. Balloon Call-Out Assistant 7. Links to KEGG 8. Wikipedia 9. Multiple Journal Articles 10. Whats it called??? 11. LogP? LogD? PSA? 12. Toxicity/Safety Information 13. Prediction for Structures NOT on ChemSpider 14. Real time prediction free of charge 15. Search Open Access Journals ChemSpider 16. Open Access Literature Searching 17. What is ChemSpider now?

  • A chemistry search engine
  • Allows text-searching of ca. 500,000 open access chemistry articles from over a dozen publishers
  • Online Physchem Prediction
  • Web-services for searching and integration
  • A platform for depositing and curating data

18. A Question

  • Is there enough novel chemistry on ChemSpider to be indexed?
    • Novel fully characterized compounds are deposited on ChemSpider on a weekly basis.
  • Can ChemSpider host Open Notebook Science efforts?
    • System presently hosts ONS efforts but needs to switch workflow from structure-centric to sample-centric
    • Nevertheless

19. UsefulChem Open Notebook Science 20. UsefulChem Open Notebook Science 21. UsefulChem Open Notebook Science 22. UsefulChem Open Notebook Science 23. Hands On Tutorial