sourcedata – bridging scientific publishing and open science · sourcedata – bridging...
TRANSCRIPT
Helmholtz Open Science WebinarsWebinar 44 – 19/ 25 April 2018
Dr. Thomas LembergerEMBO
SourceData – bridging scientific publishing and open science
1. Open Science2. SourceData3. Outlook
1. Open science
Data are from the Survey of scholarly communication tool usage. https://101innovations.wordpress.com/2016/04/04/support-for-open-science-in-eu-member-states/
Open Science
Data & publishing: separate worlds
Database
Users
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Data & publishing: separate worlds
Database
Users
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Journals
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Bridging publishing and open dataR
esea
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data
Journals
Databases
What is a figure?
NEJM 2015, 372(1):3
What is a figure?
NEJM 2015, 372(1):3
Clinical data (from 700 patients) converted into pixels…
2. SourceData
• Facilitate discovery and browsing of data and papers
sourcedata.embo.org
Making data d iscoverable
• Facilitate discovery and browsing of data and papers
• Couple discoverability with data availability
sourcedata.embo.org
Making data d iscoverable
• Facilitate discovery and browsing of data and papers
• Couple discoverability with data availability
• Bridge scientific publishing with open science
sourcedata.embo.org
Making data d iscoverable
Liechti et al. 2017Nature Methods 14:1021
Liechti et al. (2017). Nature Methods 14:1021
DataSearch
sourcedata.embo.org
DataSearch
sourcedata.embo.org
Integration with data repositoriesPaper
https://wwwdev.ebi.ac.uk/biostudies/studies/S-SCDT-MSB-16-7412
SmartFigure
Database
An AI approach to semantic analysis
Artificial neural network
Training set (20’000 examples)
SmartTag engine
An AI approach to semantic analysis
Artificial neural network
Plain text (figure legend)
SmartTag:deep semantic interpretation
An AI approach to semantic analysis
Artificial neural network
Plain text (figure legend)
SmartTag:deep semantic interpretation
Machine Author
Manuscript
Knowledge
Disseminating knowledge
3. Outlook
Accelerating science with Open Science
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Quality Open Science: how to make it work?
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Quality Open Science: how to make it work?
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Journals
Distributed responsibilities:
Quality Open Science: how to make it work?
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bilit
yVa
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Peer
Rev
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Cura
tion
Journals
Institutions
Distributed responsibilities:
Quality Open Science: how to make it work?
Relia
bilit
yVa
lue
Peer
Rev
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Cura
tion
Journals
Institutions
Individual researchers
Distributed responsibilities:
Helmholtz Open Science WebinarsWebinar 44 – 19/ 25 April 2018
THANK YOU!