statistical shape analysis tutorial shireen elhabian, prateep mukherjee and ross whitaker saturday,...
TRANSCRIPT
![Page 1: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/1.jpg)
Statistical Shape AnalysisTutorial
Shireen Elhabian, Prateep Mukherjeeand Ross Whitaker
Saturday, January 4th , 2014
![Page 2: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/2.jpg)
Correspondence Pipeline
![Page 3: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/3.jpg)
ShapeWorksBroker
cibc2.sci.utah.edu = shapeworks-server.sci.utah.edu
SSLconnection
SSLconnection
Internet
ShapeWorksServer
cibc3.sci.utah.edu
ShapeWorksServer
localhost
SCI File System:All projects are stored here
SandBox
ShapeWorksGroomShapeWorksRun
Python
SandBox
ShapeWorksGroomShapeWorksRun
Python
ShapeWorksView
Seg3D 2.1.1
Main Components
ShapeWorks Client ShapeWorks BrokerShapeWorks Server
![Page 4: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/4.jpg)
Let’s Get Started• Copy all the software given in the USB stick at a convenient location in your
computer
• Click on start menu and type ‘cmd.exe’ to start a command prompt
• First, start ShapeWorks Broker
ShapeWorksBroker.exe broker_address=localhost \
broker_rootdir=c:\shapeworks_run
• Make note of password generated. It will be required to start ShapeWorks Client
• Click on start and start another command prompt
• Start ShapeWorks Server
ShapeWorksServer.exe broker_address=localhost \
shapeworks_dir=c:\Shapeworks
* Refer to lab document(Section 2) for more instructions
![Page 5: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/5.jpg)
Connecting to a Server
Enter the username and password created
during running the broker
![Page 6: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/6.jpg)
Correspondence Pipeline
![Page 7: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/7.jpg)
Configuring a Project
![Page 8: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/8.jpg)
Configuring a Project
![Page 9: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/9.jpg)
Configuring a Project
![Page 10: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/10.jpg)
Configuring a Project
![Page 11: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/11.jpg)
ShapeWorksViewMultiple Osteochondromas
normal mutated
Group mean differences for tibia+fibula – young
Group mean differences for femur – young
normal mutated
![Page 12: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/12.jpg)
ShapeWorksViewMultiple Osteochondromas
normal mutated
Group mean differences for tibia+fibula – middle-aged
Group mean differences for femur – middle-aged
normal mutated
![Page 13: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/13.jpg)
ShapeWorksViewMultiple Osteochondromas
normal mutated
Group mean differences for tibia+fibula – old Group mean differences for femur – old
normal mutated
![Page 14: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/14.jpg)
ShapeWorksViewCAM-FAI Characterization
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ShapeWorksViewLeft Atrial Appendage
• The LAA of two groups was segmented, one group with no history of having stroke while the other group has evident history of having stroke.
Group 1: no history of stoke
Group 2: history of stoke
Group difference (group 1 to group 2)
![Page 16: Statistical Shape Analysis Tutorial Shireen Elhabian, Prateep Mukherjee and Ross Whitaker Saturday, January 4 th, 2014](https://reader036.vdocuments.net/reader036/viewer/2022062322/56649c9a5503460f9495801b/html5/thumbnails/16.jpg)
Thanks for your attention