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Supplementary Materials Table 1. Results for niche modeling analyses presenting the number of points used for analyses and area under the curve (AUC) values as a measure of quality of the models. Species Points AUC albiflora 99 0.99 arizonica 96 1 caprifolium 435 0.987 carnosifolia 10 0.998 ciliosa 91 0.998 dioica 643 0.968 etrusca 715 0.998 flava 115 0.998 hirsuta 117 0.991 hispidula 313 0.999 implexa 214 0.995 interrupta 263 0.999 periclymenum 42237 0.985 pilosa 217 0.998 prolifera 209 0.991 sempervirens 829 0.978 stabiana 14 1 subspicata 462 0.999 tragophylla 72 0.987

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Page 1: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

Supplementary Materials

Table 1. Results for niche modeling analyses presenting the number of points used for

analyses and area under the curve (AUC) values as a measure of quality of the models.

Species Points AUC

albiflora 99 0.99

arizonica 96 1

caprifolium 435 0.987

carnosifolia 10 0.998

ciliosa 91 0.998

dioica 643 0.968

etrusca 715 0.998

flava 115 0.998

hirsuta 117 0.991

hispidula 313 0.999

implexa 214 0.995

interrupta 263 0.999

periclymenum 42237 0.985

pilosa 217 0.998

prolifera 209 0.991

sempervirens 829 0.978

stabiana 14 1

subspicata 462 0.999

tragophylla 72 0.987

Page 2: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

Table 2. Niche overlap statistics for all Bioclim variables presenting the species’ with the

most and least overlap as well as the overlap values for those species (maximum = 19,

minimum = 0).

MAX MIN MAX MIN

albiflora 11.77 2.93 arizonica hirsuta

arizonica 11.77 4.86 abliflora flava

caprifolium 15.35 5.03 periclymenum subspicata

carnosifolia 11.21 4.09 tragophylla albiflora

ciliosa 12.16 4.87 hispidula flava

dioica 13.14 5.01 hirsuta subspicata

etrusca 14.74 5.41 implexa hirsuta

flava 12.42 3.66 sempervirens pilosa

hirsuta 13.14 2.82 dioica subspicata

hispidula 13.01 3.62 interrupta hirsuta

implexa 14.74 4.40 etrusca hirsuta

interrupta 13.91 3.21 subspicata hirsuta

periclymenum 15.35 5.33 caprifolium carnosifolia

pilosa 10.62 3.66 albiflora flava

prolifera 13.00 3.66 dioica subspicata

sempervirens 12.42 5.78 flava hirsuta

stabiana 13.82 5.66 etrusca hirsuta

subspicata 13.91 2.82 interrupta hirsuta

tragophylla 11.21 6.44 carnosifolia caprifolium

Page 3: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

Table 3. Niche overlap statistics for temperature variables presenting the species’ with

the most and least overlap as well as the overlap values for those species (maximum = 11,

minimum = 0).

MAX MIN MAX MIN

albiflora 7.44 1.28 interrupta hirsuta

arizonica 6.97 3.16 abliflora hirsuta

caprifolium 8.84 2.38 periclymenum subspicata

carnosifolia 6.35 1.96 tragophylla hirsuta

ciliosa 6.60 2.81 hispidula hirsuta

dioica 7.78 2.63 prolifera subspicata

etrusca 8.79 2.01 implexa hirsuta

flava 6.40 1.80 sempervirens hirsuta

hirsuta 7.19 1.11 dioica subspicata

hispidula 7.69 1.89 subspicata hirsuta

implexa 8.79 1.63 etrusca hirsuta

interrupta 8.24 1.17 subspicata hirsuta

periclymenum 8.84 2.11 caprifolium hirsuta

pilosa 6.24 1.78 albiflora hirsuta

prolifera 7.78 2.26 dioica periclymenum

sempervirens 6.84 2.48 tragophylla hirsuta

stabiana 7.85 2.01 etrusca hirsuta

subspicata 8.24 1.11 interrupta hirsuta

tragophylla 6.84 3.69 sempervirens hirsuta

Page 4: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

Table 4. Niche overlap statistics for precipitation variables presenting the species’ with

the most and least overlap as well as the overlap values for those species (maximum = 8,

minimum = 0).

MAX MIN MAX MIN

albiflora 4.80 0.50 arizonica flava

arizonica 4.89 1.02 implexa flava

caprifolium 6.51 1.24 periclymenum carnosifolia

carnosifolia 4.86 1.24 tragophylla caprifolium

ciliosa 5.55 1.65 hispidula flava

dioica 5.95 2.28 hirsuta albiflora

etrusca 5.96 2.00 stabiana flava

flava 6.02 0.50 sempervirens albiflora

hirsuta 5.95 1.66 dioica albiflora

hispidula 5.57 1.35 interrupta prolifera

implexa 5.95 1.42 etrusca flava

interrupta 5.67 1.38 subspicata flava

periclymenum 6.51 1.48 caprifolium carnosifolia

pilosa 5.29 1.43 tragophylla flava

prolifera 5.39 1.11 hirsuta albiflora

sempervirens 6.02 0.67 flava albiflora

stabiana 5.96 2.14 etrusca flava

subspicata 5.67 1.26 interrupta flava

tragophylla 5.29 2.02 pilosa flava

Page 5: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

#NEXUS BEGIN DATA; [LFY.aln_gene1 1-1882 LONITS05.aln_gene2 1883-2497 LONtrnSG05.aln_gene3 2498-3170 ] DIMENSIONS NTAX=18 NCHAR=3170; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Lonicera_morrowii CGAATTCGCCCTTTCC-AGTTCAGAATATTGCTAAGGAGAGAGGTGAAAAAAGCCCCACTAAGGTACGTAAT--TCACAATTAATTTTATTTTCTCTAATCTCACTTCTGAGTCCCATATAGTATTTTCTTTCCGAAATTTTAATTTTATTAGTAACTTAATTATCAAAACTGC----ATGTCTTGC--TATCGATCCATCTGTTGGGATGAAGAATGGTGATTTGACTGTTTTTGACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTTTCTCTTTTCTCAGCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCTTAAAAGTTGCCTACAGCCTTCTAGTTTTTATGTCAAATGAAATATATATATATTATTCACTAGTACGTAGGGTAATTCTTATCTTTGGACTGAAAATAGCGCATATTCAATGAGTAATTTTAGA------------TCTACTAAATTTTACTCCAAATTACGGTGATGGTATAAGTGTAGTGTGTATATTCCTTATATATAGTTATGATTACTTGACTAAACTAATAGGCATTGCATGGCATGAATAATATTAATTGTTCAAACAAAAATACTTACACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTTCGCAACTCGATCTACTTTAAA-AT-----ATATATTAAATTTTAAGATATAAACACTATTTAATTCAATTATTACCGAAGTAAGGGAGTCATAATTTATGATAAAACGCGAAAGTGACTTCAAAAGCTCGTTCGCATGAGAGAAGA

Page 6: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

ATAGATTTATCCTAAGGGCGGTATTATTTTTAAA----------ATAATTATTCTCAGAATTATGCATAATATTAAAAGCATATGATATAATTTTTT-TTAAAAATAGTATGTTCTTATAAAATGAAGATTAAATTTATTATATTAATTGAGAAATGAGTAATTATAGTTGAAGTGAAGGGAAGAC-GGTATCAACGACAACGCATCACTAAATATTATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAAAGGACACTTGGTAGTAGTCCTCCTGGTAACATTACAAAACAGAAAAGAAATAGAGAGAACTCTGATCAAA-----TTTTTTGACTTAGTATTATAAAATTGTTATTAATATAATTTTAAGGTTGACTTAATATTTTAATATCAATTTTTATCGCTGTTAAAATAATATTTA---------------CATATTGTAAAAAAACAAAATACGCAAAAACTAACTCAAACTTTGTATGAGATAACCTTC---------TCCCAATGCAATGGTTAATGTTATCGAGGATGGACCGGACGGAGTCACGTGGTCAGGGCTTAATCCCAGCTGGCACCACTGGTTACTCGACAGCTATTATATACGGACTGGTTACACTGTCATCTCATTTTAATATATAATCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTATCCGCGTTGCTCAGTCACCTCCTATCTTACACGTCTGCCCTCTCCGCCC---TCCTTTCTCAGATTCGTCGACCTTGCAAGGATATTATTCAACATTACTATTGTTAAAATAATTATAATTTCATTA-AAAAATATATTATAATTAAAGCGCATAAACGATAAGTTAATACACCTGCCTACTTTGCAAAGCTTATTTTAGTTTTTAGCAATAACATTTTCGGTAATTTAGTATTAATGTAATGTACAATCTTACCATGCATTTTTTGTTGTAGTATTAATCAAAGTTGTTTTAACAAGAACCATTCTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCA

Page 7: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

CAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCGGGC-GGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGTCTCACCGGCTCCCCGGCCCAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCGCTGCCCCGTCCGCGGTGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCAACCCGCGTCCCACAGGGCCGCGGGCGGCGGGGGGTGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCTTGCGACCCTGACGCGTCGTCTTCCGACGGCGCTCCGACACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGTCTTTCTTTCTCTTTCTTTATTATATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGGATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCAGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTAGATAAAAGTCGCATTTCTTATTTTATAATTCCTTCTCCATTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTTAAATAATAATGAATGCATTTTTCTGTTATGATTTCAATGGTTTTAGCGAGCCGTATCTATTAAAACCCCTCCAGCAAAGGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCC-

Page 8: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

ACGAAAAACATCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTAGGCCCAATTC Lonicera_caprifolium CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAAT-TCAC----AATTTTCTTTTCTCTCGTCTCATTTCTAAGTCCCATATAGTCTTTTCCTTGCGAAATTTTATTTTTATCAGTAAC----TTATCAAAACTGTCAAAACAACTTGC--TATCG----ATCTGTTGGGATGATGAATGGTGATTTGACTGTCCTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACAGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTCTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGCAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCGAACAAGGGAGTCATAATTTATGATAAAACGCGAAAGTATCTTTAGAAGCTCGTTTACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAAATAATTATATATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATCATATAATTTTT--AAAAAATTAGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCATTTAATTGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAACCATACATCATCTCGAACGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGT

Page 9: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

CCTCCC-TTGACATTACA-AACAGAAAAGAAATAGAGAGAACTCTAATCAAACGTA-CTTTTTTATCTAGTGTTATAAAATTGTTATTAAAATAATTTGAAGGTTGACATAATATTTTAACATCAATTTTTGTCGATGTTAAAATAATACTTA-ATTAACAACAATCACACATTACAATAAAATTAAATACGTAAAAATTAATTCGAACATCGTATAAGATAACTCTCAGAGAGAACTCCCAATGCAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTAAGGAAATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGACTGGCTACACTGTCATCCCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCTGCGGCGTATATTTTTACTTGTACCCGCGTTGTTCTGTCTTCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCATTCTCAGATTCAACATTATTATCAGAATAATTTAAAATAGTGTTATTGTTAAAATAATTATAATT---TTATAAAACTATATTATGATTAAAGCGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTTATAATGCATTATTTATTTTAGTATTAACCAAAGTTGTTTTAACAACAACCATTCTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Page 10: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGTCTTTCTTTCTCTTTCTTTATTATATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGAGCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGGGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_tragophylla CGAATTCGCCCTTTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCATATAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAATAACTTGCTATATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCTTTTA

Page 11: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

CTAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGCGACAAACACCTCTACTAAATTCTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAGGGAGTCATAATTTACGATAAAACGCAAAAATAACTTTAGAAGCTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAA----------ATAATTATTCTCAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTT-TCAAAAATAGTATGTTCCTATAAAAAAAAGATTAAATTTATCCTATTAATTGAGAAATGAATAATTATAGTTGAAGTAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGCTCCAATTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATCTTAACATCAATTTTTGTCGATGTTAAAATAATACTTA-ATTAACAATAATCACACATTACAAAAAAA--AAAAACATAAAAATTAACCCGAACATTATATAAGATAAC

Page 12: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TCTCAGAGAGAACTCCCAATACAACGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTA--TACGGACTGGCTACACTGTCATCCCATTTTAATATATACTCTCGTGTCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCCTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGCGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTATTTGTTTTAGTATTAACCAAAGTTATTTTAACAAGAACCATTCCTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCGATGCCCCGTTCGCGGTGCGCGCGGGGGCGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCGCAGGGCCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCAGGGCGCGGCCGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGCCGCCTTCCGACGGCGCTCCGAC-------------------------------------

Page 13: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

-GT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCAATTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTGTTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCC----- Lonicera_carnosifolia CGAATTCGCCCTTTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCATATAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAATAACTTGCTATATCG----TTCTGTGGGGATGAAGAATGGTGATTTGACTGTCTTTTACTAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGCGACAAACACCTCTACTAAATTCTAC

Page 14: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAGGGAGTCATAATTTACGATAAAACGCAAAAATAACTTTAGAAGCTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAAATAATTATATATAATTATTCTCAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTT-TCAAAAATAGTATGTTCCTATAAAAAAAAGATTAAATTTATCCTATTAATTGAGAAATGAATAATTATAGTTGAAGTAAAGGGAAGACAGGTATCAACGACAACGCACCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATAAAATGTA-CTTTTTGCTCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATCTTAACATCAATTTTTGTCGATGTTAAAATAATACTTA-ATTAACAATAATCACACATTACAAAAAAA--AAAAACGTAAAAATTAACCCGAACATCATATAAGATAACTCT-AGAGAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGAAATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGACTGGCTACACTGTCATCCCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC

Page 15: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

-TATACGTCTACCCTCTCTGCCCCTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGCGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGGTAATTTAGTATCAATGTACTGTACAATCTCACAATGTATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTCCTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGA

Page 16: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

ATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTGTTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCC----- Lonicera_stabiana CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTCATCTCATTTCTAAGTCCCATATAGTCTTTTCTTTGCGAAATTTTATTTTTATCAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCCTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGTACTTTTCTCATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCACATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAGGGAG

Page 17: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TCATAATTTACGATAAAACGCGAAAATAACTTTAGAAGCTCGTTCACATGATAGAAGAATAGATTTATCCTATGGGCGGTACTATTTTTAAAATAATTATATATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTTTTTTTAAATAGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCTATTAATTGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTTCTCCT-G-AACATTACAAAACAGAAAA-AAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGAGATAATATTTTAACATCAATTTTCGACGATGTTAAAATAATACTTAGATTAACAACAATCACACATTACAAAAAAATAAAATACGTAAAAATTAACCCGAACATTATATAAGATAACTTT-AGAGAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGCGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCCTTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATT----------------------------

Page 18: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Page 19: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

------------ Lonicera_periclymenum CGAATTCGCCCTTTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTCATCTCATTTCTAAGTCCCATATAGTCTTTTCTTTGCGAAATTTTATTTTTATCAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACCGTCCTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGA---------------CATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGCATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACT--TACATATAATTAACTATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAGGGAGTCATAATTTACGATAAAACGCGAAAATAACTTTAGAAGCTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAAATAATTATATATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTTTTTAAAATTAGTAGGTTCCTATAAAAAAAAAGTAAAATTTATCCATTTAATTGAGAAATTAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCGACGACAACGCATCAATAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGT

Page 20: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

CCTCCT-G-AACATTAGAAAACAGAAAAGAAATAGAAAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATTTTAACATCAATTTTTGTAGATGTTAAAATAATATTTA-ATTAACAACAATCACACATTAAAAAAAAATAAAATACGTAAAAATTAACCCGAACATTATATAAGATAACTCTCAGAGAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATGTACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAAACAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATCCGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGCGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGGTAATTTAGTATCAGTGTAATGTACAATCTCACAATGCATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAATCATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCG--------TTCGCGGTGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGT

Page 21: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCGCAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGCCGCCTTCCGACGGCGCTCCGACACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_implexa CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTCATCTCATTTCTAAGTCCCATATAGTCTTTTCTTTGCGAAATTTTATTTTTATCAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----

Page 22: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCCTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGCATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATGTTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAAGGAGTCATAATTTACGATAAAACGCGAAAATAATTTTAGAAGCTCGTTCACATAATAGAAGAATAGATTTATCCTGAGGGCGGTACTATTTTTAAAATAATTATATATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTT-TTTTAAATTGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCTATTAATTGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTAGACAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATTTTAACATCAATTTTTGTAGATGTTAAAATAATATTTA-ATTAACAACAATCACACATTAC-AAAAAATAAAATACGTAAAAATTAACCCGGACATTATAT

Page 23: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

AAGATAACTCTCAGAGAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATGTACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATATTTTTACTTGTACCCGCGTTGCCCAGTCTCCTCCCATC-TATCCGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATAATTAAAGCGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACAATTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGCCTCACCGGCCCCTCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCG--------TTCGCGGTGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCACAGGATCGCGGGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACGTTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCAAGTGACCCTGACGCGCCGTCTTCCGACGGCGCTCCGACAC

Page 24: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TATGTTACATTACACATGAAGTAAGGATTGAAAAAAGTCTTTCTTTCTCTTTCTTTATTATATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGAGCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTAGAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGGGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_etrusca CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTCATCTCATTTCTAAGTCCCATATAGTCTTTTCTTTGCGAAATTTTATTTTTATCAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCCTCTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGCATAAGTGTA--

Page 25: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAAAGAGTCATAATTTACGATAAAACGCGAAAATAACTTTAGAAGCTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAAATAATTATATATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTT-TTTTAAATTGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCTATTAATTGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACACAACAGAAAAGAAATAGAGAAAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATTTTAACATCAATTTTTGTAGATGTTAAAATAATATTTA-ATTAACAACAATCACACATTACAAAAAAATAAAATACGTAAAAATTAACCCGAACATTATATAAGATAACTCTCAGAGAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATGTACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATATTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATCCGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGT

Page 26: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TAAAATAATTGTAATTTTGTTATAAAAATATATTATAATTAAAGCGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACAATTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCTCGGCTGAAAACTGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCGCTGCCCCGTTCGCGGTGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCACAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCTGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCAAGTGACCCTGACGCGCCGTCTTTCGACTGCGCTCCGAC--------------------------------------GTCTTTCTTTCTCTTTCTTTATTATATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGAGCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATA

Page 27: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

AATTATATAAAAGTCGCATTTCTTATTTTATAATTCCTTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATAT-----AAAACCCCTCCAGCAAAAGAAAAGGTAGGGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCC----- Lonicera_albiflora CGAATTCGCCCTTTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCATATAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAACAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCTTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTGATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTACATGGCATGAATAATATTATTTGTTCAAACAAAAATAC-------TATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATA

Page 28: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TAAACATTATTTAATTCAATTATTACCTAAACAAAGAAGTCATAATTTACGATAAAACGCAAAAATAATTTTAGAAGTTCGTTCACATGATAGAAGAATAGATTTATCCCAAGGGCGGTATTATTTTTAAA----------ATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTT-AAAAAATTAGTAGGTTCCTATAAAAAAAAAGTAAAATTTATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACACCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAATTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATTTTAACATCAATTTTTGTTGATGTTAAAATCATACTTA-ATTAACAACAA-----------AAAAAAATAAAATGCGTAAAAATTAACCCGAACATTATATAAGATAACTCTCAGAAAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCACCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATGTACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCACC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAACGATAAGTTAATAAACCTACCTACTATGCAAAAGTTATTTTAGTTTTTAGCAATGACATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTCATAATGCAT

Page 29: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TGTTTATTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCG--------TTCGCGGTGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCACAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGTCGTCTTCCGACGGCGCTCCGACACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTT

Page 30: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

ATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_prolifera CGAATTCGCCCTTTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCATATAGCCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAACAACTTGC--TATCG----ATCCGTTGGGATGAAGAATGGTGATTTGACTGTCTTTTACAAATTAGT-AAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAGATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTGATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTACATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAACTTTTAGGATATAAACATTATTTAATTCAATTATTACCCAAACAAAGAAGTCATAATTTACGATAAAACACAAAAATAACTTTAGAAGTTCGTTCACATGATAGGAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAA----------ATAATTATTCTTAGAATAATGTATAATATTAAAAGTATA

Page 31: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TGATATAATTTTTT-AAAAAAATAGTAGGTTCCTA-AAAAAAAAGATAAAATTTATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTAGTAAAATAATTTTAAGGTTGACATAATATTTTAACATCAATTTTTGTTGATATTAAAATAATACTTA-ATTAACAACA-------------AAAAAATAAAATGCGTAAAAATTAACCCCAACATTATATAAGATAACTCTCAGAGAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATTCGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATGTACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCACC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAACGATAAGTTAATAAACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACAATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATT-------------------------------------------------------------------------------------------------------------------------------------------------

Page 32: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lonicera_dioica CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAA

Page 33: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTCATCTCACTTCTAAGTCCCATATAGTATTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAACAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCTTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTGATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTACATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTGTTTAATTCAATTATTACCCAAACAAAGAAGTCATAATTTACGATAAAACGCAAAAATAACTTTAGAAGTTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTTAAA---------ATAATTATTTTTAGAATAATGTATAATATTAAAAGTATATAATATAATTTTTTAAAAAAATTAGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAAT

Page 34: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TTTAAGGTTGACATAATATTTTAACATCAATTTTTGTTAATGTTAAAATAATACTTA-ATTAACAGCAATCACACATTACAAAAAAATAAAATACGTAAAAATTAACCCGAATATTATACAAGATAACTCTC---------TCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAACCATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAATATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTTACAATGCATTGCTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTATTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCGATGCCCCGTTCGCGGCGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCACAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCC

Page 35: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

CCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGCTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGTCGTCCTCCGACGGCGCTCCGACACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_arizonica CGAATTCGCCCTT---AAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAATTCTCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCATATAGTCTTTTCTTTACGAAGTTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAACAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCTTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGTTTTTATGTC

Page 36: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

AAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTATTTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTGATTCTAGAGGGACAAACACCCCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTACATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAAGAAGTCATAATTTACGATAAAA--------TAACTTTAGAAGTTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAA----------ATAATTATTTTTAGAATAATGTATAATATTAAAAGTATATGATATAATATTTT-TTAAAAATAGTAGGTTCCTATAAAAAAAAAATAAAATTCATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATTTTAACATCAATTTTTGTTGATATTAAAATAATACTTA-ATTAACAACAATCACACATTACAAAAAAATAAAATACGTAAAAATTAACCCGAATATTATATAAGATAACTCTC---------TCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCA

Page 37: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TTGGGTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATACACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAACGATAAGTTAATAAACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAATATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTGTTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTATTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCGATGCCCCGTTCGCGGCGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCACAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGCTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGTCGTCCTCCGACGGCGCTCCGACACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCA

Page 38: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

ATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATAGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_sempervirens CGAATTCGCCCTTTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAATTCTCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCATATAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAACAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCTTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTATAGCCTTCTAGTTTTTATGTCAAATTAAATGAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTGATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTACA

Page 39: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TGGCATGAATAATATTATTTGTTCAAACAAAAATAC-------TATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCAAACAAAGAAGTTATAATTTACGATAAAACGCAAAAATAACTTTAAAAGTTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAA----------ATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTT-AAAAAATTAGTAGGTTCCTATAAAAAAAAGATAAAATTTATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATATTTTAACATCAATTTTTGTCCTTGTTAAAATAATATTTA-ATTAACAACAA------------AAAAAATTAAATGCGTAAAAATTAACCCAAACATTATATAAGATAACTCT----------TCCTAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATGTACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATT

Page 40: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

CAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAATGATAAGTTAATAAACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAACAATAATATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTATTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCTTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGG--------GGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCGATGCCCCGTTCGCGGTGCGCGCGGGGGTGCCTCGCTTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCACAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGTCGTCTTCCGACGGCGCTCCGAC--------------------------------------GT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAA

Page 41: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATAGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCC----- Lonicera_hirsuta CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTCTCTTTTCTCTTATCTCACTTCTAAGTCCCATGTAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCC----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCCTTTACAAATTAGTAATAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTACTTTTTATGTCAAATTAAATAAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTAATTGTTCAAACAAAAATACTCATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAGACATTATTTAATTCAATTATTACCCAAACAAAGAAG

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TCATAATTTATGATAAAACGCAAAAATAACTTTAGAAGTTCGTTCACATGATAGAAGAATAGATTTATCTTAAGGGCGGTACTATTTTTAAA----------ATAATTATTCTTAGAATAATGTATAATATTAAAAGTATTTGATATAATTTTTTTTTAAAAATAGTAGGTTCCTATAAAAAACAAATAAAATTTATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAATTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATGTTTTAACATCAATTTTTGTTGATGTTAAAATAATATTTTAATTAACAACAATCACACATT-----AAAATAAAATACGTAAAAATTAACCCGAATATTATATAAGATAACTCTCAGAGAGAACTCCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAATATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTGTTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTTTTTTAAGATTAATGTACATATTTTATGACAAC

Page 43: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

AAGGGCGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Page 44: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

--------------------------------------------------- Lonicera_ciliosa -------------------------------------------GTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTCTCTTTTCTCTTATCTCACTTCTAAGTCCCATGTAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCCTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGACTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTAGCTTTTATGTCAAATTAAATAAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACTAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATACCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCTGAACAAAGAAGTCATAATTTATGATAAAACGCAAAAATAACTTTAGAAGTTCGTTCACGTGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAAA----------ATAATTATTCTTAGAATAATGTATAATATTAAAAGTATATGATATAATTTTTT-TTAAAAATAGTATGTTCCTATAAAAAAACAATAAAATTTATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGT

Page 45: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACAGAAAAGAAATAGGGAGAACTCTAATCAAATGTA-CTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGTCATAATGTTTTAACATCAATTTTTGTTGATGTTAAAATAATATTTA-ATTAACAACAATCACACATT----AAAAATAAAATGCGTAAAAATTAACCCGGACATTATATAAGATAACTCT-AAAAAAAACTCCCAATATAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCT----------------------------------------------------------------------------------------------------TTTTTAGCAATAATATTTTCGGTAATTTAGTATCAATGTAATGTACAATCTCACAATGCATTGTTTGTTTTAGTATTAACCAAAATTGTTTTAACAAGAACCATTTATTTTAAGATTAATGTACATTTTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCGTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCGATGCCCCGTTCGCGGCGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTC

Page 46: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

GGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCACAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGCCGTCTTCCGGCGGCGCTCCGACACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCCAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTATTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_hispidula CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCGTATA

Page 47: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

GTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----ATCTGTTGGGATGAGGAATGGTGATTTGACTGTCCTTTACAAACTAGTAAAACTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTACTTTTTATGTCAAATTAAATAAATGATTATTATTCACGAGTAGTGTACGTAATTCTTATTTTTGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACAAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTATTTGTTCAAACAAAAGTAC------ATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCGAACAAGGGAGTCATAATTTATGATAAAAAGCGAAAGTAACTTTAGAAGCTCGTTCACATGATAGAAGAATAGATTTATCCTAAGGGCGGTACTATTTTTAGAATAATTATATATAATTATTCTTAGAATAATATATAATGTTAAAAGTATATGATATAATTTTTT-TTAAAACTAGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCTATTAAATGAGAAATGAATAATTATAGTTGAAGAAAAGGGAAGACAGGTATCGACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGCAGTCCTCCT-G-AACATTACAAAACGGAAAAGAAATAGAGAGAACTCTAATCAAATGTATTTTTTTGATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATGTTTTAACATCAATTTTTGTCCTTATTAAAATAATACTTA-

Page 48: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

ATTAACAATAATCACACGTTGC-AAAAAATAAAATACGTAAAAATTAACCCGAACATTATATAAGACAACTCCCAGAGAGACCTTCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGTGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAAAGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCTTTTTCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAACGATAAGTTAATACACCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGCAAATTTAGTATCAATATAATGTACAATCTCACAATGTATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAACCATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGG-GCGCCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCA--------ATCGCGGTGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCCCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCGCAGGGTCGCGAGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGACGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTC

Page 49: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGTCGTCTCCCGACGGCGCTCCGAC--------------------------------------GT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCC----- Lonicera_subspicata CGAATTCGCCC-TTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCGTATAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCCTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTACTTTTTATGTCAAATTAAATAAATGATTATTATTCACGAGTAGTCTACTT

Page 50: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

AATTCTTATTTTCGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACAAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTAATTGTTCAAACAAAAATACTTATACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCGAATAAGGGAGTCATAATTTATGATAAAACGCGAAAGTAACTTTAGAAGCTCGTTCACATGATAGAATAATAGATTTATCCTAAGGGCGGTACTATTTTTAAA----------ATAATTATTCTTAAAATAATGTATAATATCAAAAGTTTAAGATATATTTTTTT-TTTAAAATAGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCTATTAAATGAGAAATGAATTATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCCCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTACTCCT-G-AACATTACAAAACAGAAAAGAAATAGAGAGAACTCTAATCAAATGTT-CTTTTTCATCCAGTTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATGTTTTAACATCAATTTTTGTTCTTGTTAAAATAATATTTA-ATTAACAACAATCACACATTGCAAAAAAATAAAATACGTAAAAATTAACCCGAACATTATATAAGATAACTCTCAGAGAGAACTTCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGCGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTC

Page 51: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

AAGTGCGGAAAAGAAAATCAGCAGCGGCGGGATATACTTTTACTTGTACCCGCGTTGCTCAATCTCCTCCCATC-TATACGTCTACCCTCTCTGCCCGTTTTCTTTCTCAGATTCAACATTATTACCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGATTAAAGGGCATAAACGATAAGTTAATACTCCTACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGCTAATTTAGTATCAATATAATGTACAATCTCACAATGTATTATTTGTTTTAGTATTAACCAAAGTTGTTTTAACAAGAAACATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATTTCGAAACCTGCACAGCAGAACGACCCGCGAACACGTTCGTACACCGGGACGCCGGCGGGGGGCGCTTCAGCCCCCCCGTCGGCGCTCCCATGGTCGGGGGGCTCACCGGCTCCCCGGCCGAAAACCGAACCCCGGCGCGATCCGCGCCAAGGAACAACAAACAGAAGGGCGTGCCCCCCG--------TTCGCGGTGCGCGCGGGGGTGCCTCGCCTCTTTCGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCACCCCGCGTCCCGCAGGGTCGCGGGCGGCGGGGGGAGCGGACAATGGCCTCCCGTGCCCCCGGGCGCGGCTGGCCCAAAATCGAGTCCCCGGCGGCGGACGTCACGACGAGTGGTGGTCGAAACATTCCTCTTATCACGTCGTGCGGTTCCCCGTCGCTCGGGCGGCCGAGTGACCCTGACGCGCCGTCCCCCGACGGCGCTCCGACACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGC

Page 52: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAAAAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC Lonicera_interrupta CGAATTCGCCCTTTCCAAGTTCAGAATATTGCCAAGGAGAGAGGTGAAAAATGCCCCACTAAG----GTAAT--TCAC----AATTTTCTTTTCTCTTATCTCACTTCTAAGTCCCGTAAAGTCTTTTCTTTACGAAATTTTATTTTTATTAGTAAC----TTATCAAAACTGTCAAAATAACTTGC--TATCG----ATCTGTTGGGATGAAGAATGGTGATTTGACTGTCCTTTACAAATTAGTAAAAGTGTGCTTTTTAGGTTAGATTTTGGCACTTTTCTCATCCGGCCAATGGGAGAGTTCTCCGGCGTTAACCATAAAAGTTGGCTACAGCCTTCTACTTTTTATGTCAAATTAAATAAATGATTATTATTCACGAGTAGTGTACTTAATTCTTATTTTCGGACTGAAAGTAGTGCATATTCAATGAGTAATTCTAGAGGGACAAACACCTCTACAAAATTTTACTCCAAATTAGGGTGATAGTATAAGTGTA--GTGTATATTCCT----TATAGTTATGATTACTTAACTAAACTAATAGGCATTGCATGGCATGAATAATATTAATTGTTCAAACAAAAATACTTA

Page 53: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TACATATAATTAACCATATTGTAGCATAAAAGTGGACGGCGTTAAGTAGCAATTTGCTAGTCCGCAAC----TCTACTTTAAACATAAGTAATATATTAAATTTTAAGATATAAACATTATTTAATTCAATTATTACCCGAACAAGAGAGTCATAATCTATGATAAAACGCGAAAGTAACTTTAGAAGCTCGTTCACATGATAAAATAATAGATTTATCCTAAGGGCGGTACTATTTTTAAA----------ATAATTATTCTTAAAATAATGTATAATATCAAAAGTTTATGATATATTTTTTT-TTTAAAATAGTAGGTTCCTATAAAAAAAAAATAAAATTTATCCTATTAAATGAGAAATGAATGATTATAGTTGAAGAAAAGGGAAGACAGGTATCAACGACAACGCATCACTAAATAATATAAAAATATGCAATCATACATCATCTCGAATGATGTTAGGATGTGATGATACGTAAGAGGACACTTGGTAGTAGTCCTCCT-G-AACATTACAAAACGGAAAAGAAATAGAGAGAACTCTAATCAAATGTA-CTTTTTGATCCAATTTTATAAAATTGTTATTAAAATAATTTTAAGGTTGACATAATGTTTTAACATCAATTTTTGTCTTTGTTAAAATAATATTTA-ATTAACAACAATCACACATTGCAAAAAAA-TAAAAACGTAAAAATTAACCCGAACATTATATAAGATAACTCTCAGAGTGAACTTCCAATACAATGGTTATTGTTATCGAGAATGGACCGGACGGAGTCACGCGGTCAGGACATAATCCCAGCTGGCACCATTGGTTACTCGACAGCTATTATATACGGAATGGCTACACTGTCATCTCATTTTAATATATACTCTCGTGCCTCAAGTGCGGAAATGAAAATCAGCAGCAGCGGCATATACTTTTACTTGTACCCGCGTTGCTCAGTCTCCTCCCATC-TATACGTCTACCCTCTCCGCCCTTGTCCTTTCTCAGATTCAACATTATTATCAGAATAATTTAAAGTAGTGCTATTGTTAAAATAATTGTAATTTTGTTATAAAAATATATTATGAT

Page 54: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

TAAAGGGCATAAACGATAAGTTAATACACATACCTACTTTGCAAAAGTTATTTTAGTTTTTAGCAATAACATTTTCGGTAATTTAATATCAATCTAATGTACAATCTCACAATGCATTATTTATTT-----TTAACCAAAGTTATTTTAACAAGAACCATTTTTTTTAAGATTAATGTACATATTTTATGACAACAAGGGCGAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATGTTACATTACACATGAAGTAAGGATTGAAAAAAGT--------CTCTTTCTTTATTCTATAGATATGTACAACTTTTACCAGCAATTTCATTTAGATATAAGTAAGGGCTCGAAAGATCCAATAGACAAATCTAAAGAAAAATAAAGAAGACCCCGTTGCTTTGATTTTGTTCCTTTTATTCCCATAGCCTGGCCCGGTCAATACCTAGCCGGGCCTTTTTTGTTCCAACGAATCCTAGCTAAAAGAATTTAGCTGATTTGAATTTGAAAACAAAAATGCTTGCTATTAAAGCAGCAATAAAAAGACGCGGGGCTATTTCCATTCTTTTTATATAAATGGATATAAATTATATAA

Page 55: Supplementary Materials Table 1. - Yale University · hispidula 5.57 1.35 interrupta prolifera implexa 5.95 1.42 etrusca flava interrupta 5.67 1.38 subspicata flava periclymenum 6.51

AAGTCGCATTTCTTATTTTATAATTCCCTCTCCCTTTTTGAGTTACTTGACGACCTTACGGGAATAAAAAAAATGAAACTATGGGTTGTAAAATAATAATGAATGCATTTTTCTGTTATGATTTCAGTGGTTTTAACGAGCCATATCTATTAAAACCCCTCCAGCAAAAGAAAAGGTAGAGCTTGTTATTTAGTTATTTAAAAGAGCCCCCCTTTCTTTCCGGAATCTCATTAAATTGAAACCCCCCGCGAAAAACGTCGACACTCGCATTTTCATGATTCTTTTATGATCCTATCTTTATTACGCCCAATTC ; END; begin mrbayes; charset LFY=1-1882; charset rest=1883-3170; partition favored = 2: LFY,rest; set partition = favored; lset applyto=(1,2) nst=6 rates=invgamma; unlink statefreq=(1,2) revmat=(1,2) shape=(1,2) pinvar=(1,2); set autoclose=yes; mcmcp ngen=10000000 printfreq=10000 samplefreq=10000 nchains=4 savebrlens=yes; mcmc; sump burnin=100; sumt contype=allcompat burnin=100; end;!


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