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The top documents tagged [local alignments]

Heuristic Local Alignerers 1.The basic indexing & extension technique 2.Indexing: techniques to improve sensitivity Pairs of Words, Patterns 3.Systems
Heuristic Local Alignerers 1.The basic indexing & extension technique 2.Indexing: techniques to improve sensitivity Pairs of Words, Patterns 3.Systems
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Sequence Similarity. The Viterbi algorithm for alignment Compute the following matrices (DP) M(i, j):most likely alignment of x 1 …x i with y 1 …y j
Sequence Similarity. The Viterbi algorithm for alignment Compute the following matrices (DP) M(i, j):most likely alignment of x 1 …x i with y 1 …y j
235 views
Protein RNA DNA Predicting Protein Function. Biochemical function (molecular function) What does it do? Kinase??? Ligase??? Page 245
Protein RNA DNA Predicting Protein Function. Biochemical function (molecular function) What does it do? Kinase??? Ligase??? Page 245
223 views
1-Month Practical Master Course Genome Analysis Jaap Heringa Centre for Integrative Bioinformatics VU (IBIVU) Vrije Universiteit Amsterdam The Netherlands
1-Month Practical Master Course Genome Analysis Jaap Heringa Centre for Integrative Bioinformatics VU (IBIVU) Vrije Universiteit Amsterdam The Netherlands
217 views
FASTA and BLAST. FASTA: Introduction FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison
FASTA and BLAST. FASTA: Introduction FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison
221 views
Comparing Protein Sequences Tutorial 4. Comparing Protein Sequences Substitution Matrices –PAM - Point Accepted Mutations –BLOSUM - Blocks Substitution
Comparing Protein Sequences Tutorial 4. Comparing Protein Sequences Substitution Matrices –PAM - Point Accepted Mutations –BLOSUM - Blocks Substitution
236 views
Sequence Alignment. Before we start, administrivia Instructor: Serafim Batzoglou, CS serafim@cs.stanford.edu, x3-3334 Office hours: Monday 2:00-3:30 TA:
Sequence Alignment. Before we start, administrivia Instructor: Serafim Batzoglou, CS [email protected], x3-3334 Office hours: Monday 2:00-3:30 TA:
217 views
CENTRFORINTEGRATIVE BIOINFORMATICSVU E [1] 06-11-2006 Sequence Analysis Sequence Analysis Lecture 3 C E N T R F O R I N T E G R A T I V E B I O I N F O
CENTRFORINTEGRATIVE BIOINFORMATICSVU E [1] 06-11-2006 Sequence Analysis Sequence Analysis Lecture 3 C E N T R F O R I N T E G R A T I V E B I O I N F O
215 views
CS262 Lecture 9, Win07, Batzoglou Real-world protein aligners MUSCLE High throughput One of the best in accuracy ProbCons High accuracy Reasonable
CS262 Lecture 9, Win07, Batzoglou Real-world protein aligners MUSCLE High throughput One of the best in accuracy ProbCons High accuracy Reasonable
221 views
NCBI FieldGuide NCBI Molecular Biology Resources A Field Guide part 2 August 2-3, 2005
NCBI FieldGuide NCBI Molecular Biology Resources A Field Guide part 2 August 2-3, 2005
222 views
Genomic Rearrangements CS 374 – Algorithms in Biology Fall 2006 Nandhini N S
Genomic Rearrangements CS 374 – Algorithms in Biology Fall 2006 Nandhini N S
220 views
1-month Practical Course Genome Analysis Homology searching using heuristic methods Centre for Integrative Bioinformatics VU (IBIVU) Vrije Universiteit
1-month Practical Course Genome Analysis Homology searching using heuristic methods Centre for Integrative Bioinformatics VU (IBIVU) Vrije Universiteit
223 views