teknik bioseparasi - everything at once · teknik bioseparasi dina wahyu genap/ feb 2014. outline...
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Teknik BioseparasiDina WahyuGenap/ Feb 2014
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OutlineChemical Reaction Engineering
Pendahuluanmempelajari ruang lingkup teknik bioseparasi dan teknik “cel disruption”
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Teknik Pemisahan Secara Fisika 1
Koagulasi dan flokulasi Mengetahui teknik pemisahan dengan cara koagulasi dan flokulasi
Teknik Pemisahan Secara Fisika 2Mempelajari teknik pemisahan sedimentasi
Teknik Pemisahan Secara Fisika 3 Mempelajari teknik filtrasi pada bioseparasi
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Teknik Pemisahan Secara Fisika 1Mempelajari teknik sentrifugasi pada bioseparasi
Koagulasi dan flokulasi Mengetahui teknik pemisahan dengan cara koagulasi dan flokulasi
Adsorpsi Proses adsorpsi pada cairan dan gas, serta pengetahuan bahan adsorpsi
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Adsorpsi 2Kinetika Adsorpsi, Isotherm Adsorption7
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the breaking open of cells and separation
Cell Fractionation Methods
the breaking open of cells and separation of the parts into pure fractions
involve the homogenization or destruction ofcell boundaries by different mechanical orchemical procedures, followed by theseparation of the subcellular fractionsseparation of the subcellular fractionsaccording to mass, surface, and specificgravity
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Properties of Microbial Cell Envelopes
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Lysing
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Product of Interest: Intracellular or Extracellular ?
Method Technique PrincipleStress
on ProductCost Examples
Chemical Osmotic Shock Osmotic rupture of membrane
Gentle Cheap Rupture of red blood cells
Enzyme digestion Cell wall digested,providing disruption
Gentle Expensive Micrococcus lysodeikticus treated with egg lysosyme
Table 1. Cell Disruption Technique
with egg lysosymeSolubilization Detergents solubilize
cell membraneGentle Moderate-
expensiveBile salts acting on E. coli
Lipid dissolution Organic solvent dissolvesin cell wall, and sodestabilizes it
Moderate Cheap Toluene disruption of yeast
Alkali treatment Saponification of lipids solubilizes membrane
Harsh Cheap
Mechanical Homogenization(blade type)
Cells chopped in Waring blender
Moderate Moderate Animal tissue and cells
Grinding Cell ruptured by grinding with abrasives
Moderate Cheapwith abrasives
Ultrasonication Cells broken withultrasonic cavitation
Harsh Expensive Cell suspensions at least on small scale
Homogenization(orifice type)
Cells forced throughsmall hole are brokenby shear
Harsh Moderate Large scale treatment of cell suspensions, except of bacteria
Crushing inball mill
Cells crushed between glass or steel balls
Harsh Cheap Large scale treatment of cell suspensions and plant cells
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• Chemical: alkali, organic solvents,
Cell Disruption
• Chemical: alkali, organic solvents,detergents
• Enzymatic: lysozyme, chitinase• Physical: osmotic shock, freeze/thaw• Mechanical: sonication, homogenization,
French pressFrench press
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Chemical Methods (not popular in industry)
Enzyme digestion Enzyme cost
Alkali treatment Harsh condition, degradation(PHB separation)(PHB separation)
Osmotic ShockCells are put into pure water
Solutes in the cells cause an osmotic flow of water into the cell
(Note: Plant cell are difficult to be burst.)
Solubilization : by detergentConcentrated detergent solution is added to disrupts the cell membraneDetergent - Ex: SDS (Sod Dodecylsulfate)Solubilize cell wall lipid
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Chemical Disruption
• Detergents such as Trition X-100 or NP40 can permeabilize cells permeabilize cells by solubilizing membranes.
• Detergents can be expensive, denature proteins, and must be removed after disruptionremoved after disruption
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Figure 1. Chemical structures of selected surfactants.
Lipid Dissolution Lipid DissolutionA volume of solvent( toluene) about 10% of the biomass is added to a cell suspension
The cell wall lipid is solubilized.
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Enzymatic Lysis
• dissolve the outer mannoprotein layerproduction of protoplasts from yeast and bacteria
• endo-β(1,3) glucanase• endo-β(1,3) glucanaseLytic protease
• Preparation of lytic enzymes• Lysis experiment for various enzymes -required
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Cell disruption – Mechanical method
Laboratory techniques:
SonicationEnzyme treatmenttechniques: Enzyme treatment
Industrial technology:
Ball mill grinding
Homogenization (orifice type)
High mechanical shear
Heat generation
(orifice type)
*Chemical method + mechanical method combination
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Chemical Permeabilization of Cell
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Sonication
• A sonicator can beimmersed directlyinto a cell suspension.immersed directlyinto a cell suspension.
• The sonicator isvibrated and highfrequency soundwaves disrupt cells.waves disrupt cells.
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Homogenization
• Cells are placed in a closed vessel (usually glass). A tight fitting closed vessel (usually glass). A tight fitting plunger is inserted and rotated with a downward force.
• Cells are disrupted as • Cells are disrupted as they pass between the plunger and vessel wall.
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Mechanical Disruption
Homogenizer
Figure 2. Homogenizer Assembly. (a) A typical homogenizer and (b) a homogenization valve.
Cell passing through this valve areruptured by both shear and mechanical stress.
(a)(b)
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FumaraseActivity
ApparentParticle Size
Time, min
Alcohol DehydrogenaseActivity
Figure 3. Homogenization versus time. Mechanical disruption of cells reducesparticle size but some may also denature some of the products in the cell.
*How long for operation?
min
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Ball Mill (Sand Grinder)
screen
Feed in
Cooling Jacket
Sand (bead)
Figure 4. Schematic diagram for ball mill equipment.Figure 4. Schematic diagram for ball mill equipment.
*batch, continuous type*paint, dyestuff industry
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Cells are placed in astainless steel container.A tight fitting piston is
French Press
A tight fitting piston isinserted and highpressures are applied toforce cells through asmall hole.
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Principles of the French PressPiston
Flow valve
Cylinder body
Figure 3. Diagram of French Press Cylinder.
Flow valve
Outlet tube
Figure 2. French Press Cylinder.
Sample
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Bead mill
Media volume 5.5L
Laboratory bead mill (Dyno mill and DMQ-07)
Media volume 0.4L
Production machine (DMQ-10)
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Scale-up & Application• Laboratory Scale-up
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Bead mill – Grinding media• Weaknesses of the sand mill
• Transition to closed mills• ottawa sand grinding beads• ottawa sand grinding beads
• Grinding media (beads)• Steel, zirconium oxide, aluminum oxide, Si/Al/Zr mixed oxide
(SAZ), steatite (modification of talc), glass and plastics• Diameter lies in the range from 0.1 to 3 mm.• The harder the beads, the greater the intensity of dispersion.• The number of beads is proportional to 1/d3 use smallest
beads possible.The number of beads is proportional to 1/d use smallest beads possible.
• Translational and rotational movement: compressive stress and shear
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Application in research• Horizontal bead mill used for cell rupture
(a) General view, (b) details of (i) stainless steel and (ii) polyurethane impellers
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Where C = concentration of released product (kg/m3)Cmax = maximum concentration of released material (kg/m3)(kg/m3)t = time (s) θ = time constant (s)
The time constant θ depends on the processing conditions, equipment and the properties of the cells being disrupted.For multiple passes, the For multiple passes, the following relation can be used:
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• Example:• A batch of yeast cells was disrupted using • A batch of yeast cells was disrupted using
ultrasonic vibrations to release an intracellular product.
• The concentration of released product in the solution was measured during the process:process:
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Centrifugation
• Centrifuge themost versatiletools of moleculartools of molecularbiology
• to characterizesubstances
• to separate them
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Swinging –Arm Centrifugation
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Differential Centrifugation
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Analytical ultracentrifuge• information concerning the mass and • (in a limited way) the shape of a molecule• (in a limited way) the shape of a molecule
Preparative centrifuge• permit one to use those parameters to
separate molecular types.separate molecular types.
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Centrifugal fields
• The force that any particle experiences in a spinning rotor
F = m*w2 rF = m*w2 r• m* = buoyant mass of the particle (i.e., its mass less than
the mass of solvent it displaces)• w = the velocity of the rotor in radians/sec • r = the distance to the particle from the center of the
rotor. • w2 r = radial acceleration or centrifugal acceleration
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• at 70,000 rpm, a particle 7 cm from the center• a = (70000 rpm x 2phi rad/rev x 1/60 min/s)2(7cm)
= (7329)2 s-2x 7cm= (7329)2 s-2x 7cm= 3.76 x 108 cm/s2
• normal acceleration of the earth’s gravity (g) = 980 cm/s• a ={ (3.76 x 108 ) / 980 } x g• a ={ (3.76 x 108 ) / 980 } x g
= 384,000 x g
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Sedimentation Velocity
• Any molecule or particle that is not isodensewith the fluid it displaces will tend to float orwith the fluid it displaces will tend to float orsink, depending on whether it is lighter orheavier than the surrounding fluid.
• The velocity, v, at which a particular substancemoves toward the top or bottom of a liquidmoves toward the top or bottom of a liquidcolumn alpha the acceleration.
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The constant of proportionality = sedimentation coefficient, S:sedimentation coefficient, S:
v = sw2r
S = velocity/unit accelerationS = velocity/unit acceleration
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• e.g. g-globulin - has a component that• sediments @velocity of 2.6 x 10-4cm/s sediments @velocity of 2.6 x 10 cm/s
( 0.95 cm/h) @ centrifugal field 384,000 x g
• Sedimentation coefficient (S)• = ( 2.6 x 10-4 cm/s) / (3.8 x 108cm/s )• = ( 2.6 x 10 cm/s) / (3.8 x 10 cm/s )
= 7 x 10-13 s
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Gradients is formed
material is layered on top
particles reach equilibrium with the gradientisopyknic (equal density) centrifugation
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• use: Zonal rotors form density gradient while the rotor is spinning
• i.e. the density at which it will reach an equilibrium withthe suspending medium.
• sample is layered and centrifuged until the isopyknic zonal layer of the particles is reached.
• Buoyant density of macromolecule
the suspending medium.
• e.g. DNA 2 sources diff buoyant density
band at diff spots in CsCl gradient.
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