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Page 1: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

text & sequences

Page 2: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Text Representation

Page 3: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Structured/ Unstructured

Page 4: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Lexical

Page 5: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Syntactic

Page 6: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Semantic

Page 7: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Text in Bio

Page 8: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Sequences

Page 9: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Papers

Page 10: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Sequence Vis

Page 11: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

JalView

Page 12: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Mauve

http://en.bio-soft.net/format/Mauve.jpg
Page 13: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

MEDEA

http://en.bio-soft.net/format/Mauve.jpg
Page 14: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Sequence Surveyor

Page 15: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Single-Doc Vis

Page 16: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Word-Cloud

http://www.jasondavies.com/wordcloud/#%2F%2Fwww.jasondavies.com%2Fwordtree%2Fcat-in-the-hat.txt
Page 17: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Word-Tree

http://www.jasondavies.com/wordtree/
Page 18: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Text-Arc

http://www.apple.com
Page 19: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Stefanie Posavec

http://www.notcot.com/images/2008/04/Literary-Organism-Poster.jpg
Page 20: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Multi-Doc Vis

Page 21: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

IN-SPIRE

http://in-spire.pnnl.gov/
Page 22: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

JigSaw

http://www.cc.gatech.edu/gvu/ii/jigsaw/BioJigsawVideo/BioJigsawVideo.html
Page 23: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

ParallelTopics

Page 24: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document
Page 25: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

StreamGraphs

http://bl.ocks.org/mbostock/1256572
Page 26: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Document Algorithms

Page 27: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

tf-idf

https://github.com/feltron/Processing_TFIDF/blob/master/Processing_TFIDF.pde
Page 28: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

latent Dirichlet allocation

http://www.cs.princeton.edu/~blei/papers/Blei2012.pdf
Page 29: text & sequences - users.wpi.eduusers.wpi.edu/~ltharrison/biovis/lectures/07-Sequences-Text.pdfStefanie Posavec. Multi-Doc Vis. IN-SPIRE. JigSaw. ParallelTopics. StreamGraphs. Document

Alignment

http://www.avatar.se/molbioinfo2001/dynprog/dynamic.html

Il Traffico Acqueo nella Laguna di Venezia - users.wpi.eduusers.wpi.edu/~carrera/Personal/Provincia_festivo.pdf · Il Traffico Acqueo nella Laguna di Venezia Campagna Festiva Estiva

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Lec_3_Word - users.wpi.eduusers.wpi.edu/~sullivan/WebSite-ME515/Lectures/FiniteDi…  · Web viewGauss - Seidel : Use latest info within Jacobi - Easy - Only one array - Ordering

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