Current Biology, Volume 26

Supplemental Information

The Earliest Stages

of Mitochondrial Adaptation to Low Oxygen

Revealed in a Novel Rhizarian

Ryan M.R. Gawryluk, Ryoma Kamikawa, Courtney W. Stairs, Jeffrey D.Silberman, Matthew W. Brown, and Andrew J. Roger

Figure S1

Paracercomonas sp. Panama61

Cercomonas media xt182

Paracercomonas minima SW2

Nucleocercomonas sp. HFCC 921

Neoheteromita globosa

ENV-EF023473

Cercomonas nebulosa xt164

Cavernomonas stercoris CavE

Paracercomonas oxoniensis WA8

Nucleocercomonas praelonga HFCC 920

Nucleocercomonas sp. HFCC 919Paracercomonas sp. HFCC 918

Paracercomonas sp. Panama83

Cercomonas dactyloptera C43

Agitata tremulans

Limnophila oxoniensis

Cercomonas paraglobosa 193E

Paracercomonas sp. xt159

Cercomonas longicauda

Cercomonas ambigua WA82

Cercomonas celer C51

Allapsa vibrans

Paracercomonas ambulans W80

Cercomonas hederae IVY20

Cercomonas mtoleri BuffaloH5

Cercomonas effusa Beaver-Creek

Pseudodifflugia cf. gracilis

Cercomonas karpovi C84

Cercomonas parincurva IVY7A

Cercomonas sp. AZ6

Paracercomonas crassicauda ATCC50316

Paracercomonas sp. Panama101

Paracercomonas producta WA42

Eocercomonas sp. C76

Cercomonas sphagnicola CASphI

Eocercomonas tribula IVY16A

Cercomonas elliptica N8

Cercomonas laeva C72

Cercomonas vacuolata Wyth3.8

Paracercomonas sp. HFCC 915

Cercomonas lenta WA84

Cercomonas rapida 186E

Cercomonas pigra CASphII

Cryothecomonas aestivalis 1

Cercomonas sp. Panama69

Cercomonas aff. longicauda ATCC50317

Cercomonas gigantica NY1

Paracercomonas sp. Panama107

Paracercomonas sp. HFCC 913

Paracercomonas saepenatans CA5HKV

Cercomonas jutlandica SCCAP C161

Cercomonas lata C85

Cercomonas magna IVY8C

Aurigamonas solis Galicia

Cercomonas sp. HFCC89

Cercomonas mutans W40a

Paracercomonas metabolica CS9

Sandona ubiquita

Cercomonas aff. longicauda ATCC50318

Paracercomonas astra W89

Cercomonas kolskia C59

Paracercomonas sp. xt181

Nanofila marina

Thaumatomastix sp. ATCC50250

Paracercomonas sp. HFCC 911

ENV-EF024294

Paracercomonas sp. HFCC 917

Cercomonas fastiga 183D

Metabolomonas insania HFCC 922

coastal sediment clone 73.4

Cercomonas hiberna W70

Lecythium sp.

Brevimastigomonas motovehiculus

Spongomonas minima ATCC50405

Paracercomonas sp. HFCC 916

Cercomonas ricae IB3

Cercomonas volcana C18

Cercomonas sp. ATCC50395

Bodomorpha minima ATCC50339

Paracercomonas pleomorpha 19-5C

Paracercomonas tenuis SA-S

Cavernomonas mira CavA

Paracercomonas compacta xt198

Cercomonas sp. C83

Paracercomonas elongata IVY11

Paracercomonas virgaria C71

Cercomonas clavideferens 1712D

Paracercomonas paralaciniaegerens 311C

Eocercomonas ramosa C80

Cercomonas rotunda IVY9G

Paracercomonas filosa 171F

Paracercomonas sp. Panama89

Cercomonas paravarians NZ 17E

Cercomonas parambigua WA22

Cercomonas zhukovi xt202

Paracercomonas sp. HFCC 914

Brevimastigomonas anaerobica ATCC50367

Paracercomonas marina ATCC50344

Pseudopirsonia mucosa

Paracercomonas sp. HFCC 910

Cercomonas braziliensis B13

Eocercomonas sp. E

Paracercomonas sp. Panama67

Eocercomonas minuscula C73

Cercomonas radiata xt134

Massisteria marina

Eocercomonas uvella 117E

Cercomonas kiaerdammane NY12

Mesophila limnetica

Eocercomonas echina IVY19

Paracercomonas ekelundi SCCAP C1

Paracercomonas sp. HFCC 912

Cercomonas phylloplana IIgrassA

Paracercomonas vonderheydeni NZ1-5C

Paracercomonas sp. WA10

Cercomonas deformans 208DCercomonas sp.

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Paracercomonas

Cercomonas

Eocercomonas

Cavernomonas

MetabolomonasNucleocercomonas

0.4

Tetrahymena thermophila XP_001014703.2

Syntrophobacter fumaroxidans MPOB YP_844311.1

Paramecium tetraurelia strain d4-2 XP_001439561.1

Rickettsia prowazekii str. Madrid E NP_220520.1

Euglena gracilis

Stenotrophomonas maltophilia D457 YP_006184455.1

Pavlova sp CCMP45 CAMPEP_0190508040

Trypanosoma brucei TREU927 XP_847488.1

Amycolatopsis benzoatilytica WP_020662648.1

Thermaerobacter subterraneus WP_006902676.1

Chlorobium phaeobacteroides BS1 YP_001960889.1

Gloeochaete witrockiana SAG46_84 CAMPEP_0194001040

Capsaspora owczarzaki ATCC 30864 XP_004349768.1Monosiga brevicollis MX1 XP_001748251.1

Alexandrium tamarense, Strain CCMP1771 CAMPEP_0116412044

Schizochytrium aggregatum, Strain ATCC28209 CAMPEP_0202106032

Filamoeba nolandi, Strain NC-AS-23-1 CAMPEP_0168560416

Emiliania huxleyi CCMP1516 XP_005776983.1

Oxyrrhis marina, Strain LB1974 CAMPEP_0204958458

Spirochaeta sp. L21-RPul-D2 AHC16225.1

Micromonas sp. RCC299 XP_002505866.1

Frankia sp. CcI3 YP_479792.1

Chlamydomonas reinhardtii XP_001689842.1

Ustilago maydis 521 XP_757319.1

Stereomyxa ramosa, Strain Chinc5 CAMPEP_0174263458

Phytophthora sojae EGZ12571.1

Salinibacter ruber DSM 13855 YP_444630.1

Dechloromonas aromatica RCB YP_286063.1

Acanthamoeba castellanii

Burkholderia cenocepacia AU 1054 YP_624286.1

Physcomitrella patens XP_001780340.1

Mycobacterium marinum WP_020732066.1

Arabidopsis thaliana NP_201477.1

Lotharella globosa CCCM811 CAMPEP_0190173042

Prosthecochloris aestuarii DSM 271 YP_002016903.1

Rhodococcus sp. R1101 WP_016935300.1

Azoarcus toluclasticus WP_018990151.1

Thraustochytrium sp. LLF1b CAMPEP_0193121964

Brevimastigomonas motovehiculus

Andalucia godoyi

Neisseria flavescens WP_003678835.1

Streptomyces sp. AA4 WP_009072549.1

Cyanidioschyzon merolae strain 10D XP_005539527.1

Cryptococcus neoformans var. neoformans JEC21 XP_572631.1

Gymnochlora sp., Strain CCMP2014 CAMPEP_0167760392

Magnetospirillum sp. SO-1 WP_008619925.1

Xanthomonas oryzae pv. oryzae KACC 10331 YP_200947.1

Brevibacillus massiliensi WP_019122849.1

Thecamonas trahens

Brevibacterium mcbrellneri WP_005885758.1

Isochrysis galbana CCMP1323 CAMPEP_0193682924

Sphaeroforma arctica

Nocardia farcinica IFM 10152 YP_117156.1

Mayorella sp, Strain BSH-02190019 CAMPEP_0174229508

Guillardia theta CCMP2712 XP_005841533.1

Undescribed cercomonad sp. D1 CAMPEP_0193520050

Phaeodactylum tricornutum CCAP 1055/1 XP_002186498.1

Wolinella succinogenes DSM 1740 NP_908029.1

Chloroherpeton thalassium ATCC 35110 YP_001995374.1

Naegleria gruberi XP_002674784.1

Paulinella chromatophora

Blastocystis hominis CBK22804.2Cafeteria sp., Strain Caron Lab Isolate CAMPEP_0196780626

Thermosynechococcus elongatus BP-1 NP_682167.1

Paracercomonas marina CLE00001872/00000488

Bradyrhizobium sp. BTAi1 YP_001236432.1

Durinskia baltica, Strain CSIRO CS-38 CAMPEP_0200064566

Ralstonia pickettii DTP0602 YP_008596752.1

Flexistipes sinusarabici DSM 4947 YP_004602940.1

Campylobacter jejuni subsp. jejuni ICDCCJ07001 YP_004065993.1

Ochromonas sp., Strain BG-1 CAMPEP_0173167786

Deinococcus radiodurans R1 NP_294676.1

Candidatus Pelagibacter sp. IMCC9063 YP_004357688.1

Nitrococcus mobilis WP_004999023.1

Veillonella dispar WP_005385094.1

Thauera sp. 28 WP_002924945.1

Desulfovibrio desulfuricans WP_022659078.1

Volvox carteri f. nagariensis XP_002949632.1

Rhodothermus marinus DSM 4252 YP_003289504.1

Carboxydothermus hydrogenoformans Z-2901 YP_358935.1

Beggiatoa alba WP_002690011.1

Dictyostelium discoideum AX4 XP_641069.1

Thermus thermophilus HB8 YP_144720.1

Batrachochytrium dendrobatidis JAM81 XP_006680864.1

Alkalilimnicola ehrlichii MLHE-1 YP_742173.1

Bigelowiella natans, Strain CCMP1242 CAMPEP_0185234318

Saccharomyces cerevisiae S288c NP_012774.1

Mus musculus BAE26754.1

Xylella fastidiosa Temecula1 NP_778583.1

Guttulinopsis vulgaris

Reticulomyxa filosa ETO06113.1

Schizosaccharomyces pombe 972h- NP_594319.1

Nostoc punctiforme PCC 73102 YP_001866245.1

Palpitomonas bilix CAMPEP_0113912216

Polysphondylium pallidum PN500 EFA83455.1

Ostreococcus tauri XP_003082803.1

Methylomonas sp. MK1 WP_020482371.1

Mortierella verticillata NRRL 6337 KFH69943

Arthrobacter sp. FB24 YP_830623.1

Synechococcus sp. JA-2-3B'a(2-13) YP_478336.1

Thalassiosira pseudonana CCMP1335 XP_002293997.1

Bacillus sp. 1NLA3E YP_007912296.1

Hippea alviniae WP_022671031.1

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