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Theory of solvent effects Han-sur-Lesse, 12-16 December 2016 Bernd Ensing

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Page 1: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Theory of solvent effects

Han-sur-Lesse, 12-16 December 2016 Bernd Ensing

Page 2: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Contents

1. Intro: what about solvent effects?2. Fundamentals: Permittivity, dielectric media3. Implicit solvation: Continuum models, PCM, COSMO,…4. Explicit solvation: Ewald summation5. Thermodynamic properties of liquids from the PT2 model6. Measurements and modelling of anisotropy relaxation

Page 3: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

The role of the solvent

Solvent is a medium in which solute molecules can diffuse, interact and undergo molecular transitions

As an innocent bystander (weakly interacting with solutes)• controlling solute diffusion• thermostatting solute collisions/interactions

As an interacting medium, affecting relative stabilities of species• hydrophobic/hydrophilic interaction, surfactant self-assembly, protein folding• controlling morphology of macromolecules (theta solvent)• influencing chemical equilibria, (de-)stabilising transition states• affecting dynamics through friction/viscosity

As an active participant in molecules processes• acid-base chemistry, proton transfer• redox chemistry, electron transfer• ligating transition metal complexes/catalysts• radical chemistry

Page 4: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

The influence of solvent on the properties of molecules

electron affinityionisation potential

flavin in water solvent

flavin in BLUF protein

flavin in LOV protein

negative change added to flavin

flavin in vacuum

Molecular properties are influenced by the molecular environment of a molecule, which is often a solvent.Affected properties include:- energy - geometry- vibrations- electronic occupation- charge distribution- polarisability- etc…

Example: The redox (reduction) potential of a molecule depends strongly on the environment and is very different from the electron affinity.

BLUF protein LOV protein

flavin

Page 5: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

The influence of solvent in spectroscopySolvent may affect spectra of IR, Raman, UV/Vis, NMR

Solvatochromism: the ability of a chemical substance to change color due to a change in solvent polarity.• positive solvatochromism: bathochromic shift (redshift) with increasing solvent polarity• negative solvatochromism: hypsochromic shift (blue shift) with increasing solvent polarity

benzo[a]acridines

• Non-aggregating solvatochromic bipolar benzo[f]quinolines and benzo[a] acridines for organic electronicsA Goel, V Kumar, S.P. Singh, A Sharma, S Prakash, C Singhb, R. S. AnandJ. Mater. Chem. 22, 14880 (2012)

• Pyrene-based D–p–A dyes that exhibit solvatochromism and high fluorescence brightness in apolar solvents and waterY. Niko, Y. Cho, S. Kawauchia,G, KonishiRSC Adv. 4, 36480 (2014)

Page 6: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

The influence of solvent on chemistrySolvent can have a strong influence on chemical reactions. Solvent interaction affects:• reaction equilibrium

different solvation of reactants and products• reaction rate

affect stability of the reactant stateaffect the transmission coefficient, barrier crossing probability

• affect the reaction mechanism

The reaction rate of the SN2 reaction between chlorine and chloromethane is 13 orders slower in water than in the gas phase.

J. Chandrasekhar, S.F. Smith, W. L. JorgensenJ. Am. Chem. Soc. 107, 154-163 (1985)

Ener

gy [k

cal/m

ol]

aqueoussolution

gas phase

reaction coordinate

Reaction rate:

solvent friction

trans

mis

sion

fact

or

k = kBT

he���G‡

Page 7: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Some terminology

conductionband conduction

bandconductionband

valenceband

valenceband

valenceband

Conductor Insulator Semi-conductor

largegap

ener

gy le

vels

Capacitor

+++++– – – – – –

+

electric field lines

Conductor• a material through which electric charges can move with

little resistanceInsulator• a material that does not conduct electric chargesCapacitor• a device that stores electric charge; typically containing

two conductors carry opposite charges, separated by a dielectric medium, e.g. vacuum.

Dielectric• non-conducting material that can store energy by

polarisation of molecules; increases capacitor storage.Polarisability• ability of a molecule to separate positive and negative

charge under influence of an electric fieldElectric susceptibility • measure for how easily a material polarises in response

of an applied electric fieldRelative permittivity• aka “dielectric contant”, is related to the susceptibility as εr=𝜒e+1. Ability of a material to resist an electric field.

Page 8: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

The capacitance C increases when a dielectric material is inserted between the charged conductors in a capacitor.

• C0: the capacitance without material between plates• C: measured capacitance• εr: dielectric constant ( >1)

Dielectric materials Capacitor

+++++

– – – – – –+

electric field lines

Material εrDielectric strength

(106 V/m)Air 1.00059 3Paper 3.7 16Glass 4–6 9Water 80 –

E=0 E

E=0 E

Orientation of polar molecules:

Charge redistribution within molecules, inducing dipoles:

C = ✏rC0

Page 9: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Static dielectrics

P = lim�V!0

1

�V

n�VX

i=1

pi

p = qdd –

+ dipole moment[coulomb meter]

A medium of permanent or induced dipoles has apolarisation density P, which is the dipole moment per unit volume:

[C / m2]

Without an external electric field E, the dipoles are oriented randomly and the polarisation density P is zero.

The relation between the field E, and the polarisation density P, for an isotropic and linear dielectric:

P = �e✏0E

• linear dielectrics obey this relation

• P and E not in same direction for anisotropic materials (e.g. crystalline materials)

• ferroelectrics are non-linear and show hysteresis

vacuum permittivityε0=8.8541878176…10-12 [F/m] electric susceptibility [dimensionless]

p = ↵Einduced dipole moment• α is the polarisability

The electric displacement D is related to the polarisation density as:

relative permittivity [-]

The aligned dipoles in the material cause a field counteracting the externally applied field:

E = Eext

+Epot

= Eext

�P/✏0

D = ✏0E+P = ✏0(�e + 1)E = ✏r✏0E

E = Eext

/✏r

The field in the material is reduced. (e.g. ε = 80 for water)- in capacitor: C = ✏rC0

induced field

Connection to speed of lightand vacuum permeability:

✏0 = (c2µ0)�1

Page 10: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Dielectric constant of water

Why is the permittivity temperature dependent?

Page 11: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

How does solvent screening work?

Na+ Cl–

Na+ Cl–

Two opposite charges in vacuum attract each other.

Polar solvent in between the ions are polarised, but do not reduce (screen) the attraction.

Think of the dielectric material in between the capacitor plates, it enhances attraction and capacitance!

Na+ Cl–

Polar solvent outside the ions are polarised, which do reduce (screen) the attraction.

There is more polarised solvent outside the ion pair than in between!This excess explains the screening effect.

Page 12: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Dynamics of dielectrics

A material cannot polarise instantaneously in response of an applied field.

Frequency dependence of dielectric response(figure from Wikipedia)

Dielectric dispersion:• as the frequency of the applied field

increases, polarisation processes stop to follow the oscillations in the order:

1. ionic motions2. orientation of dipoles (microwave)3. atomic motions ((far-)infrared)4. electronic motions (UV/Vis)

• above ultraviolet, only ε0 remains.

P(t) = ✏0

Z t

�1�e(t� t0)E(t0)dt0

Polarisation is a convolution of the past electric field and the time-dependent susceptibility:

Fourier transform of linear system:P(!) = ✏0�e(!)E(!)

Link to causality: polarisation can only depend on E of previous times

ε’

ε’’

ε=ε’+iε’’

Page 13: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Dynamics of dielectrics

A material cannot polarise instantaneously in response of an applied field.

Frequency dependence of dielectric response(figure from Wikipedia)

The response caused by the field is represented by a phase shift.

Treat permittivity as a complex function of frequency:

D0 amount of displacementE0 amplitude of electric fieldi = √–1

Static limit:

High frequency limit:

D0e�i!t = ✏̂(!)E0e

�i!t

✏s = lim!!0

✏̂(!)

✏1

✏̂(!) = ✏0(!) + i✏00(!) =D0

E0(cos ✓ + i sin ✓)

ε’ : energy stored in mediumε’’: energy dissipated in medium

ε’

ε’’

ε=ε’+iε’’

ε’’/ε’ = 0 : perfect lossless dielectricε’’/ε’ = ∞ : perfect conductor(microwave oven frequency: 2.45 GHz)

Page 14: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Debye relaxation

Static limit:

High frequency limit:

✏s = lim!!0

✏̂(!)

✏1

✏0(!) = ✏1 +✏s � ✏11 + !2⌧2

✏00(!) =(✏s � ✏1)!⌧

1 + !2⌧2

The Debye equations describe the dielectric behaviour of (ideal, non-interacting) dipoles as a function of frequency:

• small ωτ: ε’ —> εs• large ωτ: ε’ —> ε∞• at ωτ=1: ε’=(εs+ε∞)/2• ε’’ peak at ωτ=1

Peter Debye1884–1966Chemistry Nobel prize (1936)

ε’

ε’

ln ω

ε∞=1

εs=80τ=10

ε

Modifications to Debye model:• Cole-cole model• Cole-Davidson model• Havriliak-Negami relaxation• …

Page 15: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Water modelsDielectric constant computed:• Forcefield MD• NVT ensemble• 400 molecules• PBC/Ewald

✏⌧ = 1 +4⇡

3V kBT

�hM2i � hMi2

M =NX

i

pi

• < > : ensemble average • Total dipole moment:

Dielectric constant from fluctuations:

Global properties converge slowly:

SPC/Fw

SPC/E

SPC

Page 16: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Solvent at a charged surface

Gouy-Chapman model (1910-1913)

– – – – –

+

+ + + +

++

+

double layer {

electrolyte solution on a surface

�r2� =⇢f✏r✏0

The electric potential in the solution is determined by the charge distribution:

Poisson equation

The distribution of the charges is governed by Boltzmann statistics:

Boltzmann distribution Wi: the work to bring an ion from infinity to r⇢i(r) = ⇢1i (r) exp

✓�Wi(r)

kBT

Combining these gives the Poisson-Boltzmann equation:zi : charge of ion iΦ(r): electrostatic potential at rρ(r): charge density of the solutekB : Boltzmann’s constantT : temperatureε : dielectric constant(not so easy to solve this non-linear equation…)

r2�(r) = � 1

✏r✏0

X

i

zi⇢1i (r) exp

✓�zi�(r)

kBT

Page 17: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Debye-Hückelelectrolyte solution (from Wiki)The Poisson-Boltzmann equation can be linearised by

making use of a Taylor expansion, and truncating after 1st order

exp

✓�zi�(r)

kBT

◆⇡ 1� �zi�(r)

kBT

giving:

the Debye-Hückel equation (for an electrically neutral system).

r2�(r) = � 1

✏r✏0

X

i

✓�z2i ⇢

1i

kBT

◆�(r)�

X

i

�zi⇢1i

�D =

s✏r✏0kBTPi �z2i ⇢

1i

The Debye (screening) length:

The electric potential due to a charge Q is exponential screened by the medium with the characteristic length λD:

�(r) =Q

4⇡✏r✏0re�r/�D

Page 18: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Contents

1. Intro: what about solvent effects?2. Fundamentals: Permittivity, dielectric media3. Implicit solvation: Continuum models, PCM, COSMO,…4. Explicit solvation: Ewald summation5. Thermodynamic properties of liquids from the PT2 model6. Measurements and modelling of anisotropy relaxation

Page 19: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Implicit solvent models

Also known as “continuum” modelsin quantum chemistry: perturbation onto the solute Hamiltonian• combined with DFT, HF, post-HFin atomistic forcefield and coarse-grain simulations• e.g. in modeling of protein folding

Homogeneously polarisable medium instead of solvent molecules

• (Generalized) Born Model• Polarisable Continuum Model (PCM)• COSMO

�Gsol

= �Gelec

+�GVdW

+�Gcavity

The solvation free energy can be partitioned into 3 components:

Some important/popular implicit solvent models:

Page 20: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Generalised Born ModelBorn (1920)-Onsager (1936):

solvation energy is the difference in work to charge an ion (Born) in solvent medium versus in vacuum (Onsager introduced dipole of solute)

q: charge of the ionb: radius of the ion�Gelec = �1

2

✓1

✏1� 1

◆q2

b �U =1

✏b

Z q0

0qdq

bring charge from infinity to b:

Generalised Born Equation:

ScreenedCoulomb term

Born-Onsager solvation energy

�Gelec = �✓1� 1

◆X

i<j

qiqjrij

� 1

2

✓1� 1

◆X

i

q2ibi

Popular implicit solvent model for forcefield protein simulations• main limitation: accuracy relies on calculation of Born radii• variety of more/less accurate/demanding methods to compute

the the Born radii (i.e. the solvent accessible surface)

+

++ +

––

––– +

high ε low ε

solventaccessiblesurface

Molecule as a system of charges

Born radius

GB model neglects:• cavity energy, solute-solvent VdW• solvent polarisation by solute

Page 21: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

PCM The Polarizable Continuum Model

Gsol = Ges + Gdr + Gcav

solute atoms

solvent excluded surface

solvent accesible surfaceprobe

solvent sphere

Van der Waals spheres

electrostaticinteraction

dispersion+ repulsion

cavitationfree energy

The solvation free energy contains 3 terms:

cavity surface tessellation

vpcm(r) =

Z

�(s)

|r� s|ds ⇡TX

k=1

qk|r� sk|

vKS[⇢(r]) = vvacKS [⇢(r)] +TX

k=1

qek + qnk|r� sk|

The charge density over the cavity surface is integrated to an effective charge per surface segment, which leads to a potential at the solute:

This adds an external potential to e.g. the Kohn-Sham Hamiltonian due to a contribution from surface charges computed the nuclear and electronic polarisation:

The PCM method is (also) sensitive to the cavity size and shape. Leakage of electron density outside the cavity may give problems.Implemented and extended into several quantum chemistry programs.

Page 22: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

COSMO and COSMO-RSCOnductor-like Screening MOdel for Real Solvents

Charges of polarisation continuum derived from a scaled-conductor approximation

• cavity around solute constructed from segments (e.g. triangles) on atom-centred spheres (VdW radii + 20%)

• obtain the electric potential on the cavity surface due to the solute from a quantum chemical calculation

• Due to the solvent, this potential is lower by a factor f, depending on the dielectric constant of the solvent

• Similar to PCM, but simpler math and computationally faster.

• Works very well for high dielectric solvents (water) • Implemented and extended in various programs.

q = f(✏)qsolute f(✏) =✏� 1

✏+ x

• x = 0.5 (or 0.0)• if solvent were conductor

then q would be zero

Page 23: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Periodic Boundary Conditions

Periodic boundary conditions are used to avoid hard walls in molecular models.• particle leaving on one side, reappears with same velocity at other side• minimum image convention: particles interact with closest copy• implies periodicity onto solvent• other space filling cells than cubic are possible

Page 24: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Ewald SummationHow to deal with long range interactions?• electrostatics are long-range, V ~ r–1

• Coulomb interaction over infinite array of neutral (!) cells is at best conditionally converging

• truncation at cut-off radius and shifting of potential causes spurious density fluctuations

electrostatic potential at ion i:

Solution by Paul Peter Ewald:Rewrite as a sum of a short-range real-space term and a long-range reciprocal space term and a self-term.

q

q

q

neutral box with 2 ions:unit cell

x

screened charges

�(ri) =X

j,n

qj|rij + nL|

sum over periodic images

smoothly varying background

UEwald = U short + U long + U self

U short =1

2

NX

i 6=j

qiqjerfc

�p↵rij

rij

U long

=

1

2V

X

k 6=0

4⇡

k2|⇢(k)|2 exp(�k2/4↵)

U self = �r

NX

i=1

q2i

real space

Fourier space

self-interaction

Page 25: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Ewald SummationChoice of Ewald parameters, α, kmax, nmax

• A smaller Gaussian width (i.e. larger α) makes the short-range sum converge faster (smaller nmax)

• Wider Gaussians (i.e. small α) makes the long-range sum converge faster (smaller kmax)

• At α=√π /L both sum converged equally fast• Fast fourier transform libraries are well optimised and

parallelized• Real-space sum is cut-off to L/2 or less (CHARMM:

Rcuttoff=9 Å)

electrostatic potential at ion i:

Alternatives to Ewald summation

• Ewald sums can be further rearranged and improved• Particle-particle-particle mesh method (PPPM)• Particle-Mesh Ewald (PME)• Fast Multipole Algorithm (FMA) (non-periodic cells)

q

q

q

neutral box with 2 ions:unit cell

x

screened charges

�(ri) =X

j,n

qj|rij + nL|

sum over periodic images

smoothly varying background

Page 26: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Contents

1. Intro: what about solvent effects?2. Fundamentals: Permittivity, dielectric media3. Implicit solvation: Continuum models, PCM, COSMO,…4. Explicit solvation: Ewald summation5. Thermodynamic properties of liquids from the PT2 model6. Measurements and modelling of anisotropy relaxation

Page 27: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Heat capacity Heat conduction

In materials (liquids)• Heat stored as kinetic and potential energy• Translational, rotational, vibrational motion• Equipartition principle:

translation rotation vibration

U = 3⇥ 12RT + 3⇥ 1

2RT + (3N � 6)⇥RT

Cv =

✓dU

dT

V

• conduction, convection, radiation• electronic, photonic, phononic• no good theory for liquids

A) Non-equilibrium simulation

B) Equilibrium simulation• Green-Kubo equation

• Quantisation of energy levels is not negligible

qvibi =

exp(��h⌫i/2)

1� exp(��h⌫i)

Cv = k

Z 1

0DoS(⌫) · (�h⌫i)

2exp[�h⌫i]

(exp[�h⌫i]� 1)

2d⌫

hEvibi = �d ln qid�

=

1

2

h⌫i +h⌫i

exp[�h⌫i]� 1

vibrational partition function

Density of states obtained from frequencies (e.g. DFT calculation)

hot cold

conductivity from auto-correlation of the heat flux, J

=1

3V kBT 2lim⌧!1

Z ⌧

0hJ(t)J(0)dt

Page 28: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

2PT program PT2 method by William Goddard III et al J. Chem. Phys. 119, 11792 (2003)

Example: liquid chloroform at T = 298 K

1. 50 ps MD simulation, NVT

2. separate velocities (trans, rot, vib)

3. compute vacf

4. compute density of states

5. separate in “solid” and “gas” part

6. obtain thermodynamic properties from integration: S, H, G, Cv, ZPE,..

hv(t)v(0)i

gaff opls exp

Cp 30.23 25.18 27.31

S 53.88 45.98 43.01

Page 29: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

DMF: Dimethylformamide

Graphene nano flakes

Nanofluid: graphene flakes in DFM• classical MD simulation• LAMMPS program, GAFF/OPLS forcefields• NPT, NVT equilibration

Computational approach

Page 30: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

6 ps movie (out of a 1 ns simulation)

Page 31: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Contents

1. Intro: what about solvent effects?2. Fundamentals: Permittivity, dielectric media3. Implicit solvation: Continuum models, PCM, COSMO,…4. Explicit solvation: Ewald summation5. Thermodynamic properties of liquids from the PT2 model6. Measurements and modelling of anisotropy relaxation

Page 32: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Localorientationalorderinginliquidsrevealedbyresonantvibrationalenergytransfer

MathijsR.PanmanDanielJ.Shaw,SanderWoutersen

Radial distribution function

What about the orientation?

Page 33: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

• Energy transfer rate constant (Fermi’s golden rule)

• Coupling between transition dipole moments

• Anisotropy decay

Infra-redFörsterresonanceenergytransfer

orientation factor

Page 34: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Orientationdependentdecay

Page 35: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

MD of 1000 ethanol molecules at T=300 K

200 ps simulations, NVT ensemble

Page 36: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

radiele distributie functies

Page 37: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

N-methylacetamide (NMA) Ethanol

Page 38: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

measurementtheory

Orientationdependentdecay

Phys. Rev. Lett. 113, 207801 (2014)

reduced time t (arb. units)

Page 39: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Ontheslowdownmechanismofwaterdynamicsaroundsmallamphiphiles

WagnerH.BrandeburgoEvertJanMeijerSietseT.vanderPost

Page 40: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Tetramethyl ureaUrea

Twoamphiphilicmoleculesinwater

Page 41: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

0 4 8 12 16 20t (ps)

0

0.2

0.4

0.6

0.8

1

C2(t)

UreaTMUBulk water

w=0.10 2 4 6 8 10

t (ps)

0

0.2

0.4

0.6

0.8

1

C2(t)

AIMDExperimentalCMD SolvationCMD Global

Anisotropyw=0.1

Waterorientationaldecay

Fit function:

DFT-MD (AIMD)• CP2K • DFT BLYP-D3/TZ2VP• 4 TMU/40 H2O• t ~ 20 + 50ps (NVT)

forcefield MD (CMD)• LAMMPS• SPC-E / rigid TMU /

KBFF urea• N ~ 500 molecules• t ~ 200 ps (NPT+NVT)

Experiment• fs-IR

Page 42: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

“bulk” water

“hydrophilic” water

“hydrophobic” water

TMU solutes

TMU

Waterpartitioning

CMDsimulationsnapshot

Page 43: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

0 2 4 6t (ps)

0

0.2

0.4

0.6

0.8

1

C2(t)

TMU AIMD

0 2 4 6t (ps)

TMU CMD

0 2 4 6t (ps)

Urea CMD

Waterpartitioning

hydrophilic solvent waterhydrophobic solvent waterbulk-like solvent waterpure water

Page 44: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions
Page 45: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Model• Jump model by Laage and

Hynes, J. Phys. Chem. B 112,14230–14242 (2008)

• Hydrogen bond life times• Associative / dissociative H-

bond breaking• Close to hydrophobic surface:

dissociative mechanism becomes important (excluded volume effect)

• After dissociative breaking, bond often restores, resetting the timer (new life time)

H-bond life timesand breaking mechanism

Page 46: Theory of Solvent Effects - ACMM › molsim › han › 2016 › ensing_lecture1.pdf · The influence of solvent on chemistry Solvent can have a strong influence on chemical reactions

Summary

1. Intro: what about solvent effects?2. Fundamentals: Permittivity, dielectric media3. Implicit solvation: Continuum models, PCM, COSMO,…4. Explicit solvation: Ewald summation5. Thermodynamic properties of liquids from the PT2 model6. Measurements and modelling of anisotropy relaxation

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