this week start mt dna experiment, start high frequency of recombination (hfr) experiment, continue...
Post on 20-Dec-2015
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This Week
• Start Mt DNA experiment,
• Start High Frequency of Recombination (HFR) experiment,
• Continue Arabidopsis Developmental Screen.
Arabidopsis flower
• Wild-type,
– perianth,
• calyx (4 sepals),
• corolla (4 petals),
– androecium,
• 6 stamens,
– gynoecium,
• 2 carpels.Model Flower System
Floral Transition Mutants
• Circadian clock mutants,
• Photoreceptor mutants,
• Hormone mutants,
• Homeotic mutants,
• Others.
Inhibitory Conditions
wild typemutant
Inducing Conditions
High Frequency of Recombination(Hfr)
...bacteria exhibiting a high frequency of recombination,
– an alteration DNA sequence such that the genotype of subsequent individuals differs from the parent,
…specifically, strains with a chromosome integrated F factor that is able to mobilize and transfer part of the chromosome to the F- cell.
Hfr Cells
F factor
Bacterial Chromosome
Inserted F plasmid
...F factor integration site,
...host (bacteria chromosome) integration site.
F Pilus Attaches to F- Cell
Hfr DNA is Cut
F factor and Chromosomal DNA are Transferred
Recombination Requires Crossing over
Double Crossover
DNA not Incorporated into Chromosome are Digested
F factor inserts in different regions of the bacterial chromosome,
Also inserts in different orientations.
Origin of Replication
Hfr Order of transferstrain
H thr azi ton lac pur gal his gly thi 1 thr thi gly his gal pur lac ton azi 2 lac pur gal his gly thi thr azi ton 3 gal pur lac ton azi thr thi gly his
F factor
Hfr F-
A
a
Indicates direction of transfer.
A
A
a
Hfr DNA that is not incorporated in the F- strand, and DNA that has crossed out of the F- strand is
digested.
F factor
Hfr F-
A
Leading Gene: the first gene transferred is determined empirically.
A
Hfr
A
F-
A
A transfers first.
A transfers last.
Hfr Order of transferstrain
H thr azi ton lac pur gal his gly thi 1 thr thi gly his gal pur lac ton azi 2 lac pur gal his gly thi thr azi ton 3 gal pur lac ton azi thr thi gly his
E. coli Map
• 0 minutes is at the threonine,
• 100 minutes is required to transfer complete genome,
lac (7)
car::tn10 (0.6)tetR
car (0.6)tetS
rpoB- (90)rifR
rpoB+ (90)rifS
metB- (89)
metB+ (89)
cysG- (72) cysG+ (72)
gyrA- (48)
nalS
gyrA+ (48)
nalR
1st Selection: tetR, nalR
pp. 3 assignmentdue 11/15/2005
Mitochondrial DNA
- 16, 569 bp,- multiple copies per mt,- 100 - 1000 mt per cell,- 37 genes;
- 22 oxidative phosphorylation,- 13 tRNA, - 2 rRNA,
- Mitochondrial Control Region.
Mitochondrial Inheritance
• In mammals, 99.99% of mitochondrial DNA (mtDNA) is inherited from the mother,
• The sperm carries its mitochondria around a portion of its tail and has only about 100 mitochondria compared to 100,000 in the oocyte,
• As the cells develop, more and more of the mtDNA from males is diluted out. – less than one part in 104 or 0.01% of the mtDNA is paternal.
Mitochondrial Control Region
• control region, – single promoter on each
strand initiates transcription,– ori,
• D-loop,– replication loop topography,
• hypervariable region,– mutation rate 10x greater than
genome.
Mitochondrial Mutation Rate
Electron leak from the ETC (1 3 %) result in the formation of superoxide.
Protection Pathway
Hydroxyl radical production
Mitochondrial Control Region
• Hair follicle DNA extraction,
• PCR,
• Sequencing (at Cold Spring Harbor),
• Sequence analysis here at WWU.