tnau pdb- tamil nadu agricultural university proteome database- horse gram proteome
DESCRIPTION
Generation of 2D PAGE Experimental Data: The Horse gram leaf proteome study is employed to examine the differential proteins expressed in leaf during drought stress and irrigated condition. The proteins are separated using two-dimensional gel electrophoresis (2-DE) followed by mass spectrometric analysis of differential proteins spots. In that 10 protein spots were differentially expressed in leaf tissues of varied molecular weight ranging between 17-54 kD and isoelectric point covering the range of 4-7. The protein spots are analyzed using matrix-assisted laser desorption ionization time of-flight mass spectroscopy (MALDI-TOF-MS). Database Schema: This database runs on WAMP server with HTML as the front end and MySQL 5.5.20. as the backend using PHP 5.3.10(Hypertext Preprocessor) as interface. The results are displayed in such a manner that the proteins that were expressed in the irrigated and unirrigated leaves are compared and their results are displayed. It also includes calculated properties of proteins such as molecular weight, pI value, expression sequences obtained using MALDI-TOF and accession id. Then homology search is implemented to determine the most identical protein using protein database uniprot.The link which is provided for the accession id will connect directly to NCBI.The spot information includes homologous protein name, sequences coverage, mascot score(%),mascot result, sequence coverage. Theoretical molecular weight and pI.TRANSCRIPT
TNAU PDB –Horse Gram Proteome
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Introduction
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• TNAU PBD –Horse gram Proteome, open accessible database.
• Horse gram –drought tolerant crop.
• Stress tolerance.
• No organized database at present.
• Information incorporated in user friendly approach.
Purpose
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Methodologies
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Schema and User’s Access
Tnau genomics
TNAU PBD
Spot information
Horse gram
leaf
2D gel
Mw pI Accession
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NCBI
MYSQL
PHP
HTML
Homepage
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Gel Image
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Gel information
Spot information
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Feature Prospectus
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Reference
• Murukarthick, J., N. Senthil, M. Raveendran, P. Prabhakaran, G. Sreedevi, M. Sumanth Kumar, V. G. Shobhana, S. Dhanya, R. Khushboo, S. Arumugasamy, R. Ravikesavan and S. V. K. Jagadish. 2011. Biogen Base – An Interactive Maize Database for Phenomics Platform. International Journal of Computer Application. 2: 56–61
Visit TNAU Genomics at www.tnaugenomics.com
Visit TNAU Genomics at www.tnaugenomics.com
Won Best Poster Presentation Award on the topic “TNAU PDB” in the INTERNATIONAL CONFERENCE ON ADVANCES IN
BIOTECHNOLOGY AND PATENTING held in the Department of Biotechnology and Genetic Engineering , Bharathidasan University ,
Tiruchirappalli..
Won Best Poster Presentation Award on the topic “TNAU PDB” in the INTERNATIONAL CONFERENCE ON ADVANCES IN
BIOTECHNOLOGY AND PATENTING held in the Department of Biotechnology and Genetic Engineering , Bharathidasan University ,
Tiruchirappalli..
Under the guidanceDr.N.Senthil,Professor BiotechnologyCPMB S.Jeyarekha
BTI-09-010