tomato spotted wilt virus resistance gene”tgc.ifas.ufl.edu/2009/stevens sw7 mapping.pdf ·...
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““Localization and Mapping of Localization and Mapping of SwSw--77, a , a Tomato spotted wilt virus Tomato spotted wilt virus Resistance Resistance
GeneGene””
MikelMikel R. StevensR. StevensJohn W. Scott, Keri John W. Scott, Keri DockterDockter, Derek O, Derek O’’Neil, and Neil, and
David PriceDavid Price
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Tospoviruses
• Thrips are the vectors
• Over 1,000 species are infected– Both monocots and
dicots
• Over 15 Tospovirusspecies have been identified
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Control of TSWV in Tomato• Limited success with
pesticides• Limited success with cultural
practices
• Success with genetic engineering – Using viral genes inserted
into the genome• Hampered by public
acceptance
• Natural resistance
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Reports of TSWV Resistance in Cultivated Tomato Lines
• ‘Pearl Harbor’ 1945• ‘Ray de los Tempranos’ 1949• ‘Manzana’ 1949• ‘Anahu’ 1971• ‘Stevens’ 1986• ‘Platense’ and ‘Quil-Quil’ 1992
• Sw-5 was identified in ‘Stevens’ and a Peto Seed line
• Problem “only Sw-5 has provided broad – long lasting resistance”
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Resistance in Related Wild Species
• Samuel et al., 1930 S. pimpinellifolium• Wenholz, 1939 S. peruvianum• Costa, 1944 S. habrochaites• Iizuka et al., 1993 S. chilense• Kumar et al., 1993 S. pennellii
• Sw-5 was derived from S. peruvianum
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Reports of Sw-5 “Breaking Down”
• Areas of the world
– Italy– Spain– Hawaii– Australia– And other areas
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S. chilense ResistanceFrom LA 1938
• Has been difficult to work with in the greenhouse:– Using artificial inoculation conditions
• Reason – too severe – overwhelming – unknown for sure – ???
• However clear evidence of resistance in field conditions– South Africa– Hawaii– Panhandle of Florida/Southern Georgia
•• This This S. S. chilensechilense resistance is resistant to isolated resistance is resistant to isolated that overcome that overcome SwSw--55
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S. chilense TSWV Resistance
• New sources pedigree• S. lycopersicum x S. chilense (LA 1938)
• Initially selected for geminivirus resistance in Florida– Jay Scott
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CK12 Pedigree
F1BC1S5 = IE925F-2
F1
F3
x
S. lycopersicum x S. chilense (LA 1938)
Interspecific hybrid (F1)
F1BC1
Fla 7482B = 936011
F2 = CK12
Seed from four F3 lines were sent to the Cape area of South Africa
Tested for TSWVResistance
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% o
f Pla
nts
Visual Ratings
At Fruit Harvest
0
10
20
30
40
50
60
70
1 2 3 4 5
Stevens
No disease Clear disease
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% o
f Pla
nts
At Fruit Harvest
0
10
20
30
40
50
60
70
80
90
1 2 3 4 5
StevensFloradade
Visual RatingsNo disease Clear disease
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% o
f Pla
nts
At Fruit Harvest
0
10
20
30
40
50
60
70
80
90
1 2 3 4 5
StevensF3Floradade
Visual RatingsNo disease Clear disease
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% o
f Pla
nts
At Fruit Harvest
0
10
20
30
40
50
60
70
80
90
1 2 3 4 5
StevensF3BC resFloradade
Visual RatingsNo disease Clear disease
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SusceptibleParent
F1 Plants
F3 Plants
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CK12 Pedigree
F3 Studied in South Africa
Fla 7482B
F1
F2 = sent to Florida
x
Studied in Florida
F4 CK12 (red) Studied in Hawaii
F1BC1S5 = IE925F-2
L. esculentum x L. chilense (LA 1938)
Interspecific hybrid (F1)
F1BC1
Studied in greenhousexFla 7482B = 936011
F1
F2 = CK12
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Elucidating Sw-7 Inheritance
• Field and greenhouse studies demonstrated a single dominant gene
– Greenhouse studies used a TSWV isolate that overcomes Sw-5
– Suggested name “Sw-7”
– Florida field studies clearly demonstrated that Sw-5and Sw-7 were not allelic
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Breeding for Sw-7 in Florida
• 70+ F3 lines (selected for resistance at F2) were field screened
– 48 were selected for to use for marker work
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Looked at over 200 SSR “like”markers
Focused on chromosome 12
Found a small area on chromosome 12
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Progress Towards Locating Sw-7
• Data suggest Sw-7 is between
– 40 (C2_AT4g16710) and 59 (CT189)
• ExPEN 2000 map
– Chromosome 12
• This introgression segregates 100% with Sw-7 resistance
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So what do we know about this area?
• There are 46 markers found in the area
• Over half are above 55 cM
• Some not easy to work with
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Scrutiny of the Area
• Using the 48 F3 lines– Data suggested Sw-7
was near 50 cM area
• But then when more markers near that area were checked…
– Things did not add up
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HUM…
• So we took another F2population segregating for Sw-7
– No deliberate selection pressure
– It’s purpose was to map this region with Sw-7present
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Marker X2 Locus
cLET-8-K4 3.64 41.0
C2_At5g57970 92.81**** 43.0
T1263 2.81 45.0
C2_At2g42620 145.55**** 46.0
C2_At4G11120 2.03 48.0
TG360 0.47 50.0
T1045 141.51**** 51.0
T1736 30.85**** 52.0
T1211 141.51**** 53.0
CT-99 1.38 53.5
SSR20 0.79 58.2
SL10953i 2.03 ???
What did we Learn???
Found on the Ohio Tomato Mapping Resource Database Chromosome 12 at 29.9 Mapping Units
R P
aren
tS
Par
ent
F2 PopulationM
arke
r
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What About 48 F3 Lines From Florida and These Markers?
• Markers with some resistance testing to-date– T1263– C2At_g42G1120 ***– TG360– T1045– T1736– T211**– CT-99***– SSR20*– SL 10953i*
Marker X2 Locus
cLET-8-K4 3.64 41.0
C2_At5g57970 92.81**** 43.0
T1263 2.81 45.0
C2_At2g42620 145.55**** 46.0
C2_At4G11120 2.03 48.0
TG360 0.47 50.0
T1045 141.51**** 51.0
T1736 30.85**** 52.0
T1211 141.51**** 53.0
CT-99 1.38 53.5
SSR20 0.79 58.2
SL10953i 2.03 ???
The rest have insufficient or unreliable data to even “intimate” relationships to Sw-7
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Importance of Field Trials• Difficult to work with in
artificial inoculation trials
• Need to understand “fitness”of resistance
• Determine effectiveness to unusual isolates (strains) of TSWV– Examples:
• Australia• Taiwan• Italy• South Africa
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Develop Commercially Ready Lines
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Thanks To The Assistance Of:
• Key undergraduates–– Fred MemmottFred Memmott–– David PriceDavid Price
•• Outstand Undergraduate Oral Presentation at the National Outstand Undergraduate Oral Presentation at the National ASHS Meetings (Phoenix, AZ) in 2007ASHS Meetings (Phoenix, AZ) in 2007
–– Derek ODerek O’’NeilNeil–– Keri DockterKeri Dockter
• And Many others