transcription c483 spring 2013. 1. rna polymerase a.polymerizes rna in a 3’ 5’ direction. b.has...
TRANSCRIPT
1. RNA Polymerase
A. Polymerizes RNA in a 3’5’ direction.B. Has 3’5’ exonuclease activityC. Has 5’3’ exonuclease activityD. Catalyzes a reaction driven by pyrophosphate hydrolysis
2. Which of the following statements is true?
A. The template strand of DNA is copied by RNA polymerase 3’5’.B. The “sense” strand is DNA; the “antisense” strand is RNA.C. The coding strand of DNA is identical to the transcribed RNA.D. The template strand of DNA is identical to the transcribed RNA.E. A gene is read in the 3’5’ direction.
3. The rate limiting step in transcription is
A. Promoter bindingB. InitiationC. ElongationD. Termination
4. Weak promoters containA. no consensus sequences.B. sequences that match consensus sequences poorly.C. no TATA box.D. a TATA box but no -35 region.
5. Which of the following is not a difference between bacterial and eukaryotic transcription?
A. Bacterial transcription has less types of RNA polymerase.B. Eukaryotic transcription makes use of more general transcription factors.C. Bacterial mRNA undergo extensive post-translational modifications.D. Chromatin plays a large role in regulation of transcription in eukaryotic
cells.
Transcription• Gene—a DNA sequence that is transcribed • Housekeeping vs. regulated genes• Many types of RNA
Information Flow
• Central Dogma: information in protein cannot be incorporated into information in DNA
• RNADNA in retroviruses• We will focus on
messenger RNA (mRNA)
RNA Synthesis
• Definition of transcription: DNA-directed RNA synthesis
• RNA Polymerase• Three stages– Initiation– Elongation– Termination
Bacterial RNA Polymerase
• Multisubunit• Smaller than
replisome• Core enzyme• Plus s-subunit for
initiation
Chain Elongation Reaction
• Very similar to DNA polymerization
• Interacts with the DNA template over a short distance, then DNA double helix reforms
• No 3’5’ exonuclease
Genes• 5’ 3’ (downstream and upstream)• Coding strand vs. template strand• Sense strand vs. antisense strand
Initiation• Promoter—region of DNA that serves as
site for transcription initiation• Consensus region– TATA box– -35 region
• Strong promoter matches consensus region better—efficient transcription of rRNA
• Weak promoters—infrequent transcription
Initiation• Promoter binding is relatively fast and selective• role of s subunit– Decreases selectivity for nonspecific sequences
• Initiation is slow step– DNA unwinding– Synthesis of primer
• Elongation is fast
Nonspecific binding
One-dimensional promoter search
Holoenzyme and promoter form closed complex
Open complex allows initiation
Sigma subunit released; promoter is cleared and elongation starts
Differences in Eukaryotic Transcription
• Role of Chromatin– 35% of DNA is transcribed– Most of it is quiescent in any given cell– Buried in chromatin– Nontranscribed genes are relatively inaccessible– “Remodelling” enzymes make genes accessible
(for example, HATS)
Differences in Eukaryotic Transcription
• mRNA processing• Makes primary transcript into “mature”
transcript• PolyA tail makes RNA less susceptible to
exonucleases• “Splicing” of exons together, with removal of
introns– Mature RNA much shorter than primary transcript