uc research exchange (uc rex) and uc ... - ucsf data resources · success metrics: successfully...

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UC Research Exchange (UC ReX) and UC Health Atul Butte, MD, PhD Inaugural Director, UCSF Institute for Computational Health Sciences

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Page 1: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

UC Research Exchange (UC ReX) and UC Health Atul Butte, MD, PhD Inaugural Director, UCSF Institute for Computational Health Sciences

Page 2: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

UCReX & UC Health

5/9/17 105

Scenario Self-serve (Free)

Consult Required (May have recharge)

IRB needed

Requires MyResearch account or other secure environment

Includes clinical notes

UC Health data available in addition to UCSF data

Counts Yes No No No No Yes

De-ided data Yes No No No No Yes *

Limited data No Yes Yes Yes No Yes *

Id’ed data No Yes Yes Yes Yes Yes *

Recruit No Yes Yes Yes No Yes *

* Process to obtain data from UC Health sites can be very lengthy

Clinical Data Colloquium data.ucsf.edu

Page 3: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

5/9/17 106

UC ReX – UC Health

Page 4: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

Why UC ReX? § UC Health investigators can identify the size of potential research study

cohorts across the five UC medical centers

§ Researchers can conduct interactive searches from patient care activities at Davis, Irvine, Los Angeles, San Diego and San Francisco

§ Sponsorship from UC BRAID

§ Data derived from inpatient and ambulatory care settings

•  De-identified

•  Demographics, diagnoses, procedure codes (via ICD-9)

•  Top 150+ lab orders

•  Medications

Page 5: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse
Page 6: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

https://myresearch.ucsf.edu/uc-rex

Page 7: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse
Page 8: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse
Page 9: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

Combining healthcare data from across the six UC medical schools and systems

Clinical Data Warehouse

A Big UC Healthcare Data Analytics Platform

Page 10: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse
Page 11: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse
Page 12: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse
Page 13: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

First stage (proof of concept) Completed § Data warehouse includes all encounter based data elements

•  Built using Epic Cogito data model framework •  Industry standard architecture to be used for data export to UCDW •  Implement appropriate security and privacy controls and provide tools to assure data

integrity and quality

§ Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse •  Final data set will include harmonized data with uniform coding patterns mapped across all

local sites, with appropriate data quality and security checks in place

§ Validation question: UC primary care on appropriate statin therapy § Total count 15 million patients; ~600,000 primary care patients

•  Lab results: 800+ million •  Medication Orders: 76+ million •  Encounters: nearly 200 million

Page 14: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

Governance: Structure

Analytics/Stewardship Task Force

Compliance & Security Task Force

Executive Committee & Board

Budgeting Staffing

Planning

Issue Resolution

IRB Coordination Data/Solution Access

Policies & Procedures

Auditing Collaboration Agreements

Needs Identification Common Data Definitions Metric Definition

Data Quality Program Security and Privacy Business Rules

Quality Assurance

Architecture and Support

Prioritization

Compliance Enterprise Communication

Program Monitoring

Solution Design & Build Governance Support Stewardship Support Program Management

Honest Broker Process

Compliance Coordination & Monitoring

Enterprise Data Standards

117

Page 15: UC Research Exchange (UC ReX) and UC ... - UCSF Data Resources · Success Metrics: Successfully integrating data from local Cogito tables across all 5 UCs into a central data warehouse

Early new example: demographics and geocoding