unravelling the genome · the human genome project the human genome project (hgp) set out to...

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unravelling the genome new horizons in medicine Sequencing machines, Sanger Institute, Genome Research Limited New sequencing methods The basic principles of DNA sequencing remain the same, but the technology has come a long way since Frederick Sanger and his team first sequenced the genome of the virus phiX174 and the science of genomics was born. Automation, orders of magnitude more computing power and changes to the process have resulted in new generations of sequencing machines. Massively parallel sequencing involves sequencing thousands of clusters of DNA at the same time. As a result, we can sequence the 3 billion bases of the human genome in a matter of days and at a fraction of the original cost. And it’s getting faster and more affordable all the time. 1000 Genomes Project Between 2008 and 2015 scientists ran the 1000 Genomes Project. This used new sequencing technologies to analyse the genomes of at least a thousand anonymous people from different ethnic groups. It was another massive international project, with scientists in countries including the UK, the US, Nigeria, China, Japan, Italy and Peru all sharing data. The aim was to build up a huge catalogue of human variation, to help us understand more about both human health and disease. It brings the prospect of truly personalised medicines closer. 100,000 (100K) Genomes Project This UK project, using the latest DNA sequencing technologies, aims to sequence 100,000 genomes from NHS patients. The 100,000 Genomes Project will focus mainly on patients with rare diseases and their families, and patients with different types of cancers. This massive undertaking aims to throw light on the genetic variations which lead to disease and to change the way we identify and treat cancers. It is another step towards a future of personalised medicines. Sequencing in the surgery Reading the genome makes many things possible, from pinpointing people at high risk of developing certain diseases to picking up cancers as early as possible. Personalised medicine can become a reality, enabling doctors to choose the most effective drugs for each individual patient. Reading the genome of a pathogen means doctors can offer the right antibiotic – or none at all. In future, perhaps every hospital and GP practice will have easy access to the technology needed to sequence key areas of both patient and pathogen DNA. Understanding the human genome can be seen as the key to understanding the mystery of human life itself. Since the first complete sequence of the human genome was revealed in 2003, things have moved fast. Advances in bioinformatics and big data gathering and handling mean timescales are changing all the time. It took years to produce the first sequence of human DNA. Now it takes only days to sequence the entire human genome and this is continuously decreasing. Scientists are taking advantage of these developments to delve ever deeper into what makes us human – and what keeps us healthy. more information: www.abpischools.org.uk The Association of the British Pharmaceutical Industry, a company limited by guarantee registered in England & Wales (number 09826787), t +44 (0)20 7930 3477 [email protected] January 2017 RMI-0064-1116 5' 3' A A G C T G A C C T A G C Single stranded DNA to be sequenced The method of DNA sequencing used in the Human Genome Project mixed with Many DNA fragments made, all of different lengths as the chain terminating bases are added at random Fragments separated by electrophoresis – the shortest fragments travel furthest A A A G C T T C G A C T G G A T C G G C T G A C C T Sequence of new complementary strand of DNA Sequence of original DNA strand incubated DNA polymerase Lots of normal nucleotide bases A T C G T G G A T C G C T G G A T C G C G G G A T C G G T G G A T C G A T C G T T C G A C T G G A T C G T C G A C T G G A T C G C G A C T G G A T C G G A C T G G A T C G A C T G G A T C G C T G G A T C G T G G A T C G G G A T C G C A T C G A T C G G T C G C G Model sequence Limited number of dideoxynucleotide bases which terminate the DNA chain, each with a different coloured fluorescent tag G C T A gives us DNA sequence The Human Genome Project The Human Genome Project (HGP) set out to identify all of the genes in the human chromosomes (around 30,000 of them) and to sequence the billions of base pairs which make up human DNA. The HGP was an example of successful international cooperation, with scientists in 18 countries all working on sequencing the DNA and sharing their results. As a result of advances in the technology used to sequence DNA, the task of producing the complete human genome was completed two years ahead of schedule and under budget!

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Page 1: unravelling the genome · The Human Genome Project The Human Genome Project (HGP) set out to identify all of the genes in the human chromosomes (around 30,000 of them) and to sequence

unravelling the genomenew horizons in medicine

Sequencing machines,

Sanger Institu

te,

Genome Research

Limited

New sequencing methods

The basic principles of DNA sequencing remain the same, but the technology has come a long way since Frederick Sanger and his team first sequenced the genome of the virus phiX174 and the science of genomics was born. Automation, orders of magnitude more computing power and changes to the process have resulted in new generations of sequencing machines. Massively parallel sequencing involves sequencing thousands of clusters of DNA at the same time. As a result, we can sequence the 3 billion bases of the human genome in a matter of days and at a fraction of the original cost. And it’s getting faster and more affordable all the time.

1000 Genomes Project

Between 2008 and 2015 scientists ran the 1000 Genomes Project. This used new sequencing technologies to analyse the genomes of at least a thousand anonymous people from different ethnic groups. It was another massive international project, with scientists in countries including the UK, the US, Nigeria, China, Japan, Italy and Peru all sharing data. The aim was to build up a huge catalogue of human variation, to help us understand more about both human health and disease. It brings the prospect of truly personalised medicines closer.

100,000 (100K) Genomes Project

This UK project, using the latest DNA sequencing technologies, aims to sequence 100,000 genomes from NHS patients. The 100,000 Genomes Project will focus mainly on patients with rare diseases and their families, and patients with different types of cancers. This massive undertaking aims to throw light on the genetic variations which lead to disease and to change the way we identify and treat cancers. It is another step towards a future of personalised medicines.

Sequencing in the surgery

Reading the genome makes many things possible, from pinpointing people at high risk of developing certain diseases to picking up cancers as early as possible. Personalised medicine can become a reality, enabling doctors to choose the most effective drugs for each individual patient. Reading the genome of a pathogen means doctors can offer the right antibiotic – or none at all. In future, perhaps every hospital and GP practice will have easy access to the technology needed to sequence key areas of both patient and pathogen DNA.

Understanding the human genome can be seen as the key to understanding the mystery of human life itself. Since the first complete sequence of the human genome was revealed in 2003, things have moved fast. Advances in bioinformatics and big data gathering and handling mean timescales are changing all the time. It took years to produce the first sequence of human DNA. Now it takes only days to sequence the entire human genome and this is continuously decreasing. Scientists are taking advantage of these developments to delve ever deeper into what makes us human – and what keeps us healthy.

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The Association of the British Pharmaceutical Industry, a company limited by guarantee registered in England & Wales (number 09826787), t +44 (0)20 7930 3477 [email protected] January 2017 RMI-0064-1116

5' 3'A A G C T G A C C T A G C

Single stranded DNA to be sequenced

The method of DNA sequencing used in the Human Genome Project

mixed with

Many DNA fragments made, all of different lengths asthe chain terminating bases are added at random

Fragments separated by electrophoresis –the shortest fragments travel furthest

AAA G C

T T C G A C T G G A T C G

G C T G A C C T

Sequence of new complementary strandof DNA

Sequence of original DNA strand

incubated

DNA polymerase

Lots of normalnucleotidebases

A TC G

T G G A T C G

C T G G A T C G

C G

G G A T C G

G TG

GA

TC

G

A T C G

T T C G A C T G G A T C G

T C G A C T G G A T C G

C G A C T G G A T C G

G A C T G G A T C G

A C T G G A T C G

C T G G A T C G

T G G A T C G

G G A T C G

C A T C G

A T C G

G

T C G

C

G

Model sequence

Limited number of dideoxynucleotidebases which terminate the DNA chain, each with a different colouredfluorescent tag

GCTA

gives us

DNA sequence

The Human Genome Project

The Human Genome Project (HGP) set out to identify all of the genes in the human chromosomes (around 30,000 of them) and to sequence the billions of base pairs which make up human DNA. The HGP was an example of successful international cooperation, with scientists in 18 countries all working on sequencing the DNA and sharing their results. As a result of advances in the technology used to sequence DNA, the task of producing the complete human genome was completed two years ahead of schedule and under budget!