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VITA (March, 2015)

PERSONAL Name: E. Virginia Armbrust Address: School of Oceanography, Box 357940 University of Washington Seattle, WA 98195 Web site http://www.armbrustlab.ocean.washington.edu

EDUCATION 1980 B.A., Stanford University, Human Biology. 1990 Ph.D., Biological Oceanography, Massachusetts Institute of Technology and

Woods Hole Oceanographic Institution. Thesis title: The Life Cycle of the Centric Diatom Thalassiosira weissflogii: Control of Gametogenesis and Cell Size.

EMPLOYMENT 2011- Director, School of Oceanography, University of Washington. 2006- Professor, School of Oceanography, University of Washington. 2002-06 Associate Professor, School of Oceanography, University of Washington. 1996-02 Assistant Professor, School of Oceanography, University of Washington. 1990-95 Postdoctoral Fellow, Department of Biology, Washington University. 1983-90 Graduate Research Assistant, Biological Oceanography, Massachusetts

Institute of Technology. 1981-83 Research Technician, Moss Landing Marine Laboratories. 1980-81 Research Technician, California Department of Fish and Game. HONORS AND AWARDS

2014-17 Simons Foundation Investigator in Simons Collaboration on Ocean Processes and Ecology.

2013-18 Gordon and Betty Moore Foundation Investigator in Marine Microbiology. 2012 Elected Member, Washington State Academy of Science. 2012 Elected Fellow, American Association for the Advancement of Science (AAAS). 2011 Elected Fellow, American Academy of Microbiology. 2011 Appointed Member, Federal Advisory Committee, National Climate Assessment. 2009 Distinguished Graduate Teaching Award, College of Ocean and Fishery Sciences. 2008 Botanical Society of America Darbaker Prize for meritorious work on algae. 2008- Lowell A. and Frankie L. Wakefield Endowed Professor 2006 Luigi Provasoli award for best publication of 2005 in Journal of Phycology. 2005 Distinguished Research Award, College of Ocean and Fishery Sciences. 2004-12 Gordon and Betty Moore Foundation Investigator in Marine Microbiology. 2001 Distinguished Graduate Teaching Award, College of Ocean and Fishery Sciences. 2000 Office of Naval Research DURIP Award. 1999 Distinguished Graduate Teaching Award, College of Ocean and Fishery Sciences. 1997-02 National Science Foundation CAREER Award.

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1990-03 National Science Foundation Marine Biotechnology and Ocean Sciences Postdoctoral Fellow. 1987 Best Student Paper Award, AGU/ASLO.

UNIVERSITY SERVICE

University 2012- Member, Advisory Committee, Data-Driven-Discovery Provost Initiative 2012 Member, Dean of Engineering Search Committee 2011 Member, Provost Search Committee 2011 Member, 10 yr review, UW Computer Science and Engineering 2009 Member, Discovery Focus Group, 2 Year 2 Decades Initiative 2007- Member, Steering Committee E-science Institute 2007 Member, 2020 University Charette 2006 Member, College of Ocean and Fishery Sciences Dean Review Committee. 2005 Member, committee to develop graduate program “Conservation of Living Systems.” 2005 Invited Presenter, UW Founder’s Weekend. 2005 Invited speaker for Science Forum Public Lecture Series. 2005 Invited speaker, Undergraduate Research Exposed. 2005-11 Invited Moderator, Undergraduate Research Symposium. 2003 Member, College of Ocean and Fishery Sciences Dean Review Committee. 2002 Invited Speaker, Faculty Fellows Tenure & Promotion Workshop.

College 2010-11 Member, College Council 2009 Member, Steering Committee College of Environment Institute 2002 “Ocean to Stars” public lecture

School 2006-11 Member, Faculty Council 2004 Member, School of Oceanography Director Search Committee. 2002, 3 Member, Faculty Council. 2001 Member, Search Committee for Fisheries hire. 2000 Member, Graduate Student Recruitment Committee for School of Oceanography. 2000 Member, Open House Committee for School of Oceanography. 2000 Member, Search Committee for Fisheries hire. 1999- Member, Recruitment Committee for School of Oceanography. 1996- Co-director, Marine Molecular Biotechnology Laboratories (MMBL). 1996- Member, Faculty Council, 1996-1997; 1998-1999, 2000-2001 for School of

Oceanography. 1997-9 Member, Plant Molecular and Integrative Function Committee (PMIF), an

interdisciplinary group from botany, biochemistry, forestry, microbiology, oceanography.

1998 Participant, University of Washington Faculty Field Tour. 1996 Organizer, Biological Oceanography Lunch Seminar. PROFESSIONAL OFFICES, SERVICE International Committees and Related Activities 2013-14 Member, Board of Reviewing Editors, Science

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2011- Member, Scientific Advisory Board, TARA Oceans. 2010 Member, External Review Committee, Department of Botany, University of British

Columbia, Canada. 2009 Member, Ecology Review Panel, Stazione Zoologica Anton Dohr, Naples, Italy 2009 Invited Participant, International Workshop on Ocean Acidification, February. 2008- Editorial Board Member, Marine Genomics. 2007- Member, Advisory Committee for Integrated Microbial Diversity at the Canadian

Institute for Advanced Research (CIFAR). 2007 Invited instructor, Plankton Bloom Dynamics – an Integrative Approach using

Molecular and Genomic Tools, Barcelona, Spain, June. 2005-08 US representative to review the European Union Marine Genomics Network of

Excellence, Brussels, Belgium. 2002 Invited Participant, Diatom-Copepod workshop, Ischia, Italy. 2002 Invited Participant, EUROHAB-ECOHAB Planning Workshop in Italy, September National Committees and Related Activities 2014- Member, Scientific Advisory Board, Institute for Systems Biology. 2014 Chair, NSF site visit team for C-DEBI, a Science and Technology Center. 2013- Appointed Member, Ocean Studies Board 2013- Elected Member, Ocean Leadership Board of Trustees 2013 Chair, Ocean Carbon Biogeochemistry-sponsored workshop, GeoMICS. 2013 Member, External Review Committee, Department of Earth and Planetary Sciences,

Harvard University. 2013 Member, NSF site visit team for C-DEBI, a Science and Technology Center. 2011-15 Member, Selection Committee, Procter and Gamble Award in Applied and

Environmental Microbiology. 2011 Member, Steering Committee, NASA/NSF-sponsored workshop "Empirical

Approaches to Alternative Chemistries of Life." 2011-14 Appointed Member, Federal Advisory Committee, National Climate Assessment. 2011 Invited Participant, American Academy of Microbiology, Linking Microbes to Climate:

Incorporating Microbial Activity into Climate Models, February, Washington, DC. 2010 Member, Steering Committee, NSF-sponsored workshop “Using molecular methods to

link ocean chemistry with biological activity.” 2010 Invited Speaker, National Research Council, Ocean Infrastructure Strategy for U.S.

Ocean Research in 2030, February, Washington, DC. 2010 Invited Participant, Microbiological Targets for Ocean Observing Laboratories (Micro-

TOOLs) 2010 Workshop, Gordon and Betty Moore Foundation, January, San Francisco.

2009 Member, National Science Foundation Proposal Review Panel 2009- Member, Steering Committee for NSF-sponsored program “Evolutionary and

Ecological Consequences of Climate Change.” 2009 Member, DOE Joint Genome Institute, DNA Sequencing Grand Challenge Committee. 2008 Invited speaker, Joint Genome Institute review panel. 2008 Member, The Future of Synthesis in the Ecological Sciences, an NSF-sponsored

workshop. 2008 Member, Academic Review Committee, Marine and Environmental Biology Section in

the Department of Biological Sciences, University of Southern California, College of Letters, Arts and Sciences.

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2008 Invited participant and speaker, Air Force Office of Scientific Research (AFOSR) and The National Renewable Energy Laboratory (NREL), workshop on Microalgal Lipid to Biofuels

2007-08 Co-chair, Department of Energy’s Office of Biological and Environmental Research (BER) on Carbon Cycling and Biosequestration

2007 Co-chair, Ecogenomics Symposium on Aquatic Cells and Molecules, St. John, Virgin Islands.

2006-7 ORION Observatory Steering Committee. 2006- Member, Scientific Steering Committee, National Science Foundation, Ocean Carbon

and Biogeochemistry 2006 Contributor, Blue Ribbon Report for Ocean Observatories Initiative (OOI): Scientific

Objectives and Network Design 2006- Member, Scientific Advisory Board, CAMERA: a bioinformatics/cyberinfrastructure

program 2004-05 Chair, Steering Committee for Ecogenomics Sensor Workshop sponsored by NOPP and

Bureau of Intelligence and Research. 2004-07 Member Scientific Advisory Committee for the Joint Genome Institute 2004 Invited Participant, Frontiers in Genomics: Insights into Protist Evolutionary Biology,

Sponsored by NSF, May. 2004 Co-chair for Department of Energy Genomes to Life “Road-mapping” workshop,

March. 2004 Invited Participant, workshop to develop U.S. National Plan for Algal Toxins and

Harmful Algal Booms, March 2003 Invited Participant, Unveiling the Ocean’s Hidden Majority: a Roadmap, Sponsored by

Alfred P. Sloan and the Gordon and Betty Moore Foundation, November 2003 Organizer, Diatom Whole Genome Annotation Jamboree II, March. 2002-05 Standing Member, Advisory Committee for the Provasoli-Guillard National Center for

Culture of Marine Phytoplankton (CCMP). 2002 Organizer, Diatom Whole Genome Annotation Jamboree, October. 2002 Organizer, Department of Energy-sponsored workshop to develop criteria for selecting

eukaryotic phytoplankton for whole genome sequencing. 2001 Invited Participant, National Institute of Health and National Science Foundation

Roundtable Discussion of “Oceans and Human Health,” December. 2001- Member, NSF Steering Group for “Ocean Carbon Cycle Research Program.” 2001 Invited Participant, National Research Council’s Ocean Studies Board Symposium on

Ocean Reference Materials, September. 2001 Invited Speaker and Participant, Department of Energy-sponsored “Genome to Life”

Workshop, June. 2001 Invited Participant, NSF-sponsored Upstream Genomic Facility (UGF) Action Meeting,

June. 2001 Member, NSF Review Panel for proposals in Biological Oceanography. 2001 Member, NSF Review Panel for REU proposals in Biological Oceanography. 2000- Lead Advisor, Department of Energy Diatom Genome Sequencing Project. 2000 Invited Participant, Phycological Society of America Planning Workshop, July. 2000 Invited Participant, NSF Workshop “Center for Ocean Science Education Excellence

(COSEE)”, May. 2000 Invited Participant, NSF Workshop “Marine Microbial Genomics”, April. 2000 Invited Participant, NSF Workshop “Ecological Determinants of Oceanic Carbon

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Cycling (EDOCC)”, March. 1999 Member, NOAA Review Panel. 1999 Invited Participant in NSF sponsored CAREER PI meeting, January. 1997 Member, Department of Energy Review Panel. Invited Seminars, International 2015 Invited Speaker, Jaques Monod Conference, Bretagne, France. 2015 Invited Speaker, Janelia Evolutionary Cell Biology, Ashburn, VA. 2015 Invited Speaker, AAAS, San Jose, CA. 2014 Invited Seminar Speaker, International Society for Microbial Ecology, Seoul, Korea 2014 Invited Plenary Speaker, Joint Aquatic Sciences Meeting, Portland, Oregon. 2013 Invited Plenary Speaker, Comparative Genomics of Eukaryotic Microorganisms,

EMBO Conference, Sant Feliu de Guixols, Spain 2013 Invited Plenary Speaker, 14th International Congress for Protistology, Vancouver,

Canada. 2013 Invited Keynote Speaker, International Conference on Microbiology, Bremen,

Germany. 2012 Invited Keynote Speaker, RECOMB Satellite Workshop on Comparative Genomics,

Niterói, Brazil. 2012 Invited Speaker, Gordon Research Conference, Oceans and Human Health, Maine. 2012 Invited Speaker, Gordon Research Conference, Microbial Ecology in the era of 'omics,

Italy. 2010 Invited Symposium Speaker, International Society for Advanced Cytometry, Seattle,

May. 2010 Invited Seminar Speaker, University of British Columbia, Vancouver, Canada, March. 2009 Plenary Speaker, International Phycology Congress, Hong Kong, August 2008 Invited Speaker, 16th International Microbial Genomics Conference, Lake Arrowhead,

California, September. 2008 Plenary Speaker, Genomes 2008, Paris, France 2007 Invited Speaker, Royal Society, “Sequencing the Seas- Addressing the unknown

unknowns of marine microbial function,” London, England, April. 2006 Plenary Speaker, Network of Excellence Marine Genomics Europe, Sorento, Italy,

November. 2006 Plenary Speaker, XII International Conference on Harmful Algae, Copenhagen,

Denmark, September. 2006 Invited speaker, Station Biologique Roscoff, Roscoff, France, June. 2005 Plenary Speaker, International Conference on Microbial Genomes, Halifax, Nova

Scotia, April. 2004 Plenary Speaker, International Diatom Symposium, Poland, Sept. 2004 Invited Speaker, Alfred Wegner Institute, Germany, August. 2004 Invited Speaker, Dept of Biology, Ecole Normale Supérieure, Paris, France, June. 2004 Invited Speaker, Gordon Research Conference on Marine Microbes, France, June. 2003 Plenary speaker, American Geophysical Union Chapman Meeting on “The Role of

Diatom Production and Si Flux and Burial in the Regulation of Global Cycles,” Greece. 2003 Plenary speaker, 3rd European Phycological Congress, Belfast, Ireland. 2000 University of Rome, Italy, September. 2000 Statione Zoologie, Naples, Italy, September.

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Invited Seminars, National

2014 Invited Plenary Speaker, Edward O. Wilson Biodervisity Symposium, University of Alabama. 2013 Invited Speaker, Bioinformatics Series, University of Georgia. 2012 Invited Speaker, Biotech/Life Sciences seminar series, University of Nebraska. 2012 Plenary Speaker, American Society of Microbiology annual meeting. 2011 Invited Speaker, Duke Marine Lab, North Carolina. 2011 Invited Speaker, University North Carolina, Chapel Hill. 2011 Invited Speaker, Phycological Society of America annual meeting. 2010 Invited speaker, NOAA National Marine Fisheries Service. 2010 Invited speaker, University of California Los Angeles. 2009 Invited speaker, University of Southern California. 2009 Invited speaker, Joint Genome Institute User’s Meeting. 2008 Invited Speaker, Distinguished Lecture Series, Oregon Graduate Institute. 2008 Invited Speaker, Environmental Bioinorganic Chemistry Gordon Research Conference,

New Hampshire. 2008 Discussion Leader, Oceans and Human Health Gordon Research Conference, New

Hampshire. 2008 Invited Speaker, Microbiology, University of Washington. 2008 Invited Speaker, Oceans and Human Health, University of Washington. 2007 Invited Speaker, Society of Industrial Microbiology, Denver, CO, July. 2007 Invited Speaker, Harvard University, Microbial Science Initiative Symposium, March. 2006 Plenary Speaker, Phycological Society, Juneau, Alaska, July. 2006 Invited Speaker, Sequim Marine Lab, April. 2005 Invited Speaker, Hopkins Marine Lab, Stanford University, October. 2005 Invited Speaker, J. Craig Venter Institute’s Annual Conference “Genomes, Medicine,

and the Environment, Hilton Head, South Carolina, October. 2005 Plenary Speaker, Interdepartmental Student Symposium in Microbiology, University

California, Berkeley, April. 2004 Invited Speaker, Symposium for Earth System Initiative, Massachusetts Institute of

Technology, March 2004 Invited “Tutorial” Speaker, American Society of Limnology and Oceanography

(ASLO) annual meeting 2004 Invited Seminar Speaker, University of California, Santa Barbara 2003 Plenary speaker, Department of Energy Genome Meeting 2002 Plenary speaker, Department of Energy Biological Ocean Margin Program (BIOMP) 2002 University Washington, Zoology 2002 Symposium speaker, American Society of Limnology and Oceanography annual

meeting, Hawaii, February. 2001 Symposium speaker, Phycological Society of America annual meeting, Estes Park, CO,

June. 2001 Texas A & M, February. 2000 Chesapeake Biological Lab, University of Maryland, December. 1999 University of Washington, Fisheries. 1997-8 East/West Program, held at Friday Harbor, December. 1997 University of Puget Sound, November.

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1996 University of Washington, Zoology.

Field Work Lab participation: 2015 Kilo Moana transect, Portland to Hawaii, February 2014 Aloha, HOT cruise, R/V Kilo Moana, December 2014 North Pacific, R/V Melville, Fe, July 2013 South Atlantic, R/V Knorr, Deep DOM transect, March 29-April 2013 North Pacific, R/V Thompson, Seattle/Hawaii transect, March. 2011 North Pacific, R/V Thompson, Seattle/Hawaii transect, October. 2011 North Pacific, R/V Western Flyer, September. 2011 M/V Tokyo, Long Beach/Hong Kong, February, May. 2011 North Pacific, R/V Thompson, Seattle/Hawaii transect, January. 2010 North Pacific, R/V Western Flyer, September. 2010 Seattle to Dutch Harbor, Alaska Transect, R/V Thompson, May. 2010 Washington, Oregon Coast Cruises, R/V Wecoma, June, August 2009 Washington, Oregon Coast Cruises, R/V New Horizon, June, August. 2008 Line P Transect, R/V Tully, June. 2007 North Pacific, R/V Western Flyer, October. 2006 Equatorial Pacific, R/V Kilo Monoa, August/September. 2004 Sargasso Sea Cruise, R/V Weatherbird, August. 2002 Sargasso Sea Cruises, R/V Endeavor, March and October. 2001 Sargasso Sea Cruises, R/V Endeavor, June and September.

My own cruise participation includes: 2013 Dimensions of Biodiversity cruise, Chief Scientist, R/V Kilo Moana,

August/September. 2012 Molecular biogeochemical cruise, Chief Scientist, R/V Thompson, May. 2011 Oceans and Human Health cruise, R/V Thompson, October. 2010 Oceans and Human Health cruise, R/V Thompson, November. 2009 Oceans and Human Health cruise, R/V Thompson, November. 2007 Oceans and Human Health cruise, R/V Thompson, October. 2006 Oceans and Human Health cruise, R/V Thompson, October. 2005 Vision cruise, North Pacific, R/V Thompson, September. 2002 Phyotplankton cruise, Co-Chief Scientist, R/V Oceanus, March. 1987 Phytoplankton cruise, R/V Oceanus, June. 1986 Phytoplankton cruise, R/V Atlantis II, December. 1986 Phytoplankton cruise, R/V Gyre, September. 1985 Microbiological cruise, R/V Knorr, December. 1984 Phytoplankton cruise, R/V Hudson, December. 1983 Biological Oceanography cruise, R/V Cayuse, March. 1981 VERTEX III, R/V Wecoma, November.

INSTRUCTIONAL ACTIVITIES Courses Taught Undergraduate: (assessment rating spans from 0=poor to 5=excellent) Course # Course Title (credits) Date Enrollment Instruction Assessment

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OCN 499B Undergraduate Research (2) W, 97 OCN 460A Oceanic Data Interpretation (3) S, 97 34 4.25 OCN 220 Intro. Field Oceanography (3) S, 03 18 4.7 OCN 220 Intro. Field Oceanography (3) S, 05 17 3.9 OCN 499C Climate Change (3) S, 06 7 4.6 OCN200 Introductory Oceanography (3) S, 07 167 3.6 OCN200 Introductory Oceanography (3) S, 08 188 3.8 OCN200 Introductory Oceanography (3) S, 09 202 4.2 OCN200 Introductory Oceanography (3) S, 10 207 4.6 Graduate: (assessment rating spans from 0=poor to 5=excellent) Course # Course Title (credits) Date Enrollment Instruction Assessment OCN539B Molecular Bio Seminar (1) S, 96 5 4.9 OCN574A Molecular Methods (3) A, 96 10 4.2 OCN574A Molecular Methods (3) A, 97 13 4.4 OCN539B Molecular Bio Seminar (1) S, 98 3 4.95 OCN574A Molecular Methods (3) A, 98 18 4.45 OCN531 Phytoplankton (3) W, 99 6 4.87 OCN574A Molecular Methods (3) A, 99 12 4.58 OCN531 Phytoplankton (3) W, 00 5 4.94 OCN574A Molecular Methods (3) A, 00 16 4.53 OCN531 Phytoplankton (3) W, 01 13 4.83 OCN574A Molecular Methods (3) A, 01 6 4.83 OCN531 Phytoplankton (3) W, 02 3 5.0 OCN531 Phytoplankton (3) W, 03 13 4.4 OCN588 Global Carbon & Greenhouse Gasses (3) W, 03 12 OCN531 Phytoplankton (3) W, 06 12 4.9 OCN531 Phytoplankton (3) W, 07 11 4.9 OCN531 Phytoplankton (3) W, 08 8 4.7 OCN531 Phytoplankton (3) W, 09 7 5.0 OCN531 Phytoplankton (3) W, 10 8 4.7 Fish 507 Marine Biodiversity (3) W, 11 8

Postdoctoral Fellows Advised Currently Bryn Durham 2015-present Sophie Clayton 2013-present Tony Chiang 2011-present

Graduate Students Advised Currently Chair, Committees for: Vaughn Iverson Biological Oceanography Ph.D. 2006- Supported by Moore Foundation Gwenn Hennon Biological Oceanography Master’s, Ph.D. 2009- Supported by NSF Helena van Tol Biological Oceanography Master’s, PhD 2011- Supported by Moore Foundation

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Diane Rico Biological Oceanography Master's 2012 Supported by Simons Foundation Rachelle Lim Biological Oceanography Master's, Ph.D 2014 Supported by Simons Foundation

Co-Chair, Committees for: Hilary Palevsky Chemical Oceanography Master’s, Ph.D. 2010- Supported by NSF fellowship Member, Committees for (in Oceanography):

Shirley Leung Physical Oceanography Master's 2014- Angie Boysen Chemical Oceanography Master's 2014- Vega Shah Biological Oceanography Master's 2012- Katherine Heal Chemical Oceanography Master’s 2012- Michael Carlson Biological Oceanography Master’s, Ph.D. 2008-

Member, Committees for (out of Oceanography): Carolyn Garrison-Laney ESS PhD 2013- Postdoctoral Fellows Advised in Past

Shady Amin 2010-2014 (current, Assist. Professor, NYU Abu Dhabi) Jeff Turner 2010-2014 (current, Assist. Professor, Texas A&M) Francois Ribalet 2008-2012 (current: Research Assist. Professor, U. Washington) Robin Kodner 2008-2011 (current: Assist. Professor, Western Washington U.) Adrian Marchetti 2005-2008

(current: Assist. Professor, U. North Carolina) Thomas Mock 2005-2008

(current: Assoc. Professor, University of East Anglia, UK) Peter von Dassow 2003-2007 (current: Asst. Professor, Pontifica Universidad Catolica, Chile) Winnie Lau (current: staff, Pew Charitable Trust) 2005-2006 Tatiana Rynearson 2003-2005 (current: Assoc. Professor, U. Rhode Island)

Graduate Students Advised in Past

Member, Committees for: Jeff Bowman Biological Oceanography Ph.D. 2011-2014 Deirdre Lockwood Chemical Oceanography Ph.D. 2008-2013 Katherine Wetzel Chemical Oceanography Master’s 2010-2013 Eric Rehm Physical Oceanography Master’s, Ph.D. 2004-12 Jesse Port School of Public Health Ph.D. 2011-12 YongChui Kwon Computer Science (GSR) Ph.D. 2011-12 Michele Wrabel Biological Oceanography Master’s, Ph.D 2004-12 Alyssa Atwood Chemical Oceanography Master’s 2009-2011

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Amy Cash Chemical Oceanography Master’s 2007-2010 Michael Lakeman Biology Ph.D. 2002-2010 Emily Nahas Biological Oceanography Master’s 2006-2009 Elly Walsh Chemical Oceanography Master’s 2006-2008 Katarina Juhaszova Microbiology Master’s 2008 Min Lin Biological Oceanography Master’s 2005-2008 Laurie Juranek Chemical Oceanography Master’s, Ph.D. 2002-2007 Mikelle Rasmussen Biological Oceanography Master’s 2000-2005 Jamie Pierson Biological Oceanography Master’s, Ph.D. 2000-2006 Pam Jensen Fisheries Ph.D. 1999-2005 Matthew Schrenk Biological Oceanography Master’s, Ph.D. 1998-2005 Julie Huber Biological Oceanography Master’s, Ph.D. 1998-2004 Mausmi Mehta Biological Oceanography Master’s 1999-2003 Nathan Alhgren Biological Oceanography Master’s 2001-2003 Ben Van Mooy Chemical Ocenaography Ph.D. 2001-2003 Adrienne Huston Biological Oceanography Ph.D. 2001-2003 Karen Junge Biological Oceanography Master’s, Ph.D. 1996-2002 Kenia Whitehead Chemical Oceanography Ph.D. 1996-2002 Amy Uhlenhopp Chemical Oceanography Master’s 2000 Ting Sun Fisheries Master’s 1999-2000 Michael Jacobs Botany Ph.D. 1996-2000 Byron Crump Biological Oceanography Ph.D. 1996-1999 Andrea Weiss Biological Oceanography Master’s 1996-1999 Lee Karp-Boss Biological Oceanography Ph.D. 1997-1998 Stephen Goodson Physical Oceanography Master’s 1997 Elizabeth Elliot Physical Oceanography Master’s 1997 Ed Doran Biological Oceanography Master’s 1996 Chair, Committee for: Sara Bender Biological Oceanography Master’s, Ph.D. 2006-2013 Eric Armstrong Chemical Oceanography Master’s 2010-2012 Colleen Durkin Biological Oceanography Master’s, Ph.D. 2005-2012 Julie Koester Biological Oceanography Ph.D. 2005-2012 Kate Hubbard Biological Oceanography Master’s, Ph.D. 2002-2010 Mikelle Rasmussen Biological Oceanography Ph.D. 2005-2008 Winnie Lau Biological Oceanography Ph.D. 2000-2005 Micaela Parker Biological Oceanography Ph.D. 1999-2004 Sheila O’Brien Biological Oceanography Master’s 2001-2004 Tatiana Rynearson Biological Oceanography Master’s, Ph.D. 1996-2002 Lila Koumandou Biological Oceanography Master’s 1998-2000 Undergraduate Student Research Advised Currently

Ryan Groussman Biology 2012- (Awarded Mary Gates Fellowship, 2014)

Maria Hamilton Undeclared 2013- Trevor Eakes 2014-

Undergraduate Student Research Advised in Past

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Lyndsey Sandwick Oceanography 2012-2013 Meg Regan Oceanography 2010-2013 (Awarded Mary Gates Fellowship, 2013) Alex Mitchel-Morton Undeclared 2012-2013 Brian Djunaedi Computer Science 2011- Sun-Li Beatteay Oceanography 2011- Matt Knight Oceanography 2009-12 Jackie Schwartzstein Fisheries 2011-12 Kelsey Gaessner Biology

2010-12 Jenny Lai Oceanography 2011 Diane Perry Oceanography 2011 Kevin Tran Biology 2009-2010 George Roth Oceanography, Geography 2010 Likhi Ondov Electrical Engineering 2010 Martha James Oceanography 2009-2010 Carly Mareno Oceanography 2009-2010 Franziska Lutz Oceanography 2008-2010 Tiffany Truong Biology 2007-2010 Chris Fox Computer Science 2009 Chris Reichert Undeclared 2009 Justin Reina Electrical/Mechanical Engineering 2009 Andy Wong Microbiology 2005-2009 Claire Ellis Aquatic and Fisheries Science 2007-2009 Rachelle Lambert Biology 2006-2009 April Bailey Oceanography 2007-2009 Kenneth Hamel Biology

2007-2008 Audrey Djunaedi Pre-Engineering/Applied Music 2007-2008 James Mattson Undeclared, Stanford 2007-2007 Wendy Guo Oceanography 2005-2007 Tasha Snow Oceanography 2005-2007 (Awarded Mary Gates Fellowship, 2005-2006) Elizabeth Cady Honors 2006 Seth Reda Biology 2003-2005 Ben Gilmore Oceanography 2004-2005 Jeff Bernhardt Biology 2005 Marnie Briceno Biology 2005 Melanie Null Oceanography 2004 James Falkner Oceanography 2003 Peter Curtis Biochemistry 2003 Chuck Lausche Chemistry 1998-2003 (Awarded Mary Gates Fellowship, 2001-2002) Rhonda Marohl Biology/Oceanography

2002-2003 Ben Miller Biology 2003 Meredith Vaughn Oceanography 2001-2003 (Awarded Mary Gates Fellowship, 2002-2003)

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Min Lin Computer Science 2002 Mercedes Madison-Villar Biochemistry 2001 Andrea Knecht Undeclared 2001-2002 Leif Palmer-Burns Oceanography 2000 Garrett Hageman Oceanography Spring 1999 Heather Galindo Oceanography/English 1997-2000

(Awarded Mary Gates Fellowship, 1999-2000) Amy Bright Botany Spring 1998 Kara Johnson Oceanography 1996-7

Outreach Activities 2013 Speaker at Seattle Aquarium, Sound Conversations 2008 Co-author (for 10th edition), Introduction to World’s Ocean, an introductory oceanography

textbook 2006 Speaker, Davidson College. Two talks presented: one on marine genomics and one on

ocean health to a general audience. 2006 Speaker, American Meterological Society, Online Ocean Studies Implementation

Workshop. 2005- Co-author (for 9th edition), Introduction to World’s Ocean, an introductory oceanography

textbook. 2004 Invited Speaker, American Women in Science (AWIS) awards ceremony. 2004 Contributed essay for Oceanography textbook “The World’s Oceans” by Sverdrup,

Duxbury and Duxbury. 2003-4 Mentor for Partners in Science to have a high school teacher, Michael Dunn, conduct

research in my lab for 2 consecutive summers with support from the Murdock Foundation.

2002 “Distinguished Speaker,” Naval Undersea Museum. 2002 Video-taped for Genetics Program at Museum of Science. 2001- Supervised a high school student, Joy Terman, from Franklin High School in my lab as

part of her biotechnology class. 2001 Supervised a high school student, Rhea Kimble, from Franklin High School in my lab as

part of her biotechnology class. Also participated in her biotechnology conference. 2000- Mentor for Partners in Science to have a high school teacher, Lance Winmill, conduct

research in my lab for 2 consecutive summers with support from the Murdock Foundation. 2000 Invited speaker for education session of AGU/ASLO. “Linking the High School

Classroom to University Research: A Focus on High School Teachers.” 1999- Conduct a two week-long high school teacher workshop at Friday Harbor Marine Labs,

June 1999 and August 2001. 1998 Invited speaker for College/University Partnership Program, a mentoring program for

community college teachers, Summer. 1998 Invited speaker for Marine Biotechnology; Northwest Bio Conference, a conference for

community college teachers from the Pacific Northwest. 1998 Invited panelist for Lakeside High School Biology Presentations, Spring, 1998, 1999. 1997 Invited speaker for education session at American Society of Limnology and

Oceanography, “Development of a laboratory workshop for high school teachers.” 1997 Participant, Junior Academy of Science. FUNDED RESEARCH

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Current: Simons Collaboration on Ocean Processes and Ecology, 7/1/14-6/30/17, $1,049,583. Gordon and Betty Moore Foundation Marine Microbiology Investigator Award, 10/13-9/18, $2,126,000. Dimensions: Collaborative Research: Significance of nitrification in shaping planktonic

biodiversity in the ocean; NSF, 1/1/11- 12/31/15, $2,395,087; Co-PIs, David Stahl, Anitra Ingals, Al Devol (U. Washington), Jim Moffet (USC).

Collaborative Research: A Systems Biology Approach to Characterize Diatom Response to Ocean Acidification and Climate Change, National Science Foundation, 6/13- 4/16 $249,999; PIs, Nitin Baliga (ISB), Monica Orellana (ISB/UW).

Implementation of continuous flow cytometry for high resolution mapping of microbial distributions in surface waters, National Science Foundation, 6/1/12- 5/31/15, $873,930.

Previous: Gordon and Betty Moore Foundation Marine Microbiology Investigator Award, 9/04-9/13,

$8,120,749. Collaborative Research: A Systems Biology Approach of Diatom Response to Ocean

Acidification and Climate Change, National Science Foundation, 10/09-9/13, $398, 613. EAGER: The relation between microbial biogeography and ocean chemistry across a

persistent oceanographic “hotspot” in the NE Pacific Ocean. NSF, 1/1/12- 12/31/13; $300,000; Co-PIs, James Moffet (USC), Greg Cutter (Old Dominion).

Metagenomic analysis of microbes exposed to alternative fuels; ONR, 4/15/12-12/31/12; $146,459; one-year no-cost extension.

Pacific Northwest Center for Human Health and Ocean Studies, National Science Foundation, 10/1/09 - 9/31/11, $1,824,997 (total), 1 year no-cost extension.

The impact of biological carbon export and phytoplankton community structure on CO2 uptake in the North Pacific; NOAA, 41/10-3/31/13, $589, 897, Co-PI, Paul Quay (U. Washington).

Pacific Northwest Consortium for Pre- and Post-doctoral Traineeships in Oceans and Human Health; NOAA, 10/07-10/12, $ 472,115.

International Research Experiences for Students Project: Molecular Ecology and Evoultion of Marine Photosynthetic Organisms; National Science Foundation, 3/07-3/10, $147,858, Co-PI Paul Falkowski (Rutgers). No-cost extension 3/11.

EAGER: Assessment of Pseudo-nitzschia Diatom Ferritin Gene Expression as a Molecular Indicator of Iron Nutritional Status along Natural Iron Gradients, National Science Foundation, 10/09-9/11, $120,000.

Plankton Analysis by Automated Submersible Imaging Flow Cytometry: Transforming a Specialized Research Instrumentation into a Broadly Accessible Tool and Extending its Target Size Range. Office of Naval Research, 7/01/08 – 06/30/10, $216,238; no-cost extention, 6/30/11.

A Micro-Plankton Detector for Deployment in the Marine Environment, National Science Foundation, 12/01/05 – 08/30/11 (became PI in 2008), $948,185.

Frontiers in Metagenomics, Transciptomics and Ocean Ecology; Gordon and Betty Moore Foundation, 12/07-10/10, $84,980, Co-PI, Alex Worden (MBARI).

Pacific Northwest Center for Human Health and Ocean Studies, NIEHS/NSF, 5/04-5/10, $6,408,405 (total), Co-PI Elaine Faustman (UW).

Deep Genome and Transcript Sequencing of Marine Eukaryotes; Gordon and Betty Moore Foundation, 1/08-11/09, $826,657.

Diatom Photorespiration and C/N Cycling in the Upper Ocean: An Integrated Molecular-

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Biochemical Approach, Department of Energy, 9/00 – 9/09, $1,781,666, Co-PIs, Rick Keil (U.W.) and Jennifer Cherrier (Florida A & M University); supplemental award 7/02-8/02, $34,955; supplemental award 8/02-11/02, $60,348; supplemental award 2/03-8/03, $61,850.

Analysis of Diatom Bloom Dynamics Using DNA Fingerprints; Office of Naval Research Biological Oceanography, 10/98-11/07, $ 675,501.

ECOHAB: Development of Molecular and Biochemical Markers for Nutrient Stress and Toxin Production in Pseudo-Nitzchia, NOAA/NSF, 10/01-11/05, $276, 574, Co-PIs Raphael Kudela (UC Santa Cruz), Jon Zehr (UC Santa Cruz), Jason Smith (Moss Landing Marine Labs).

Genetic Diversity in Marine Phytoplankton, Partners in Science Program, M. J. Murdock Charitable Trust, 6/03 – 5/04, $14,000, funds 2 summers of research by Michael Dunn, a high school teach from Washington High School in Tacoma, WA.

Collaborative Research: Combining rRNA Probes and Cell Cycle Analyses to Investigate in situ Growth Rates of Eukaryotic Phytoplankton, National Science Foundation, 4/01-3/05, $312,622, Co-PI, Rob Olson (WHOI).

CAREER: Control of Sexual Reproduction in Marine Diatoms: A Molecular and Genetic Approach, National Science Foundation, 6/97-6/02, $397,648; no-cost extension until 2005. Supplement for collaboration with Dr. Mary Rose Lamb from the University of Puget Sound (an undergraduate institution), 2/99-9/99, $13,444.

Molecular Identification of Diatom/Bacterial Interactions in Puget Sound, WA, Partners in Science Program, M. J. Murdock Charitable Trust, 6/00 – 5/02, $14,000, funds summer research by Lance Winmill, a Renton High School teacher.

DURIP: Instrumentation for the High Throughput Molecular Genetic Analysis of Phytoplankton; ONR, 4/2000-4/2001, $285,000.

Development of Molecular Genetics for Marine Diatoms. Washington Sea Grant; $40,000; 1/97-1/98.

PUBLICATIONS (and work in progress)

In prep. Marchetti, Adrian, Veronica P. Lance , Sophie Bonnet, Zackary Johnson, James W. Murray and E. Virginia Armbrust . New and regenerated production in the western equatorial Pacific Ocean: rates, size-class contributions and nutrient controls. For submission to Limnology and Oceanography.

In prep. Ribalet, Francois, Chris Berthiaume, Jeremy Hyrkas, Camille Cobb, Sophie Clayton, Daniel Halperin, Bill Howe, Jarred Swalwell, and E. Virginia Armbrust. Popcycle: a database management system approach for environmental flow cytometry data. For submission to Bioinformatics.

In prep. Hyrkas, J., S. Clayton, F. Ribalet, D. Halperin, E. V. Armbrust, B. Howe. Cluster analysis for large-scale, continuous flow cytometry data. For submission to Bioinformatics.

In prep. Caron, D. A., H. Alexander, A. E. Allen, J. M. Archibald, E. V. Armbrust, C. Bachy, A. Bharti, C. J. Bell, S. T. Dyrhman, S. Guida, K. B. Heidelberg, J. Z. Kaye, J. Metzner, S. R. Smith, A. Z. Worden. Gene discovery across the eukaryotic tree of life enables new insights into ocean ecosystems. For submission, Nature Microbiology Reviews.

In prep. Morales, R. L. and E. V. Armbrust. Re-engineered SOLiD mate-pair protocol for environmental genomes and metagenomes. For submission to Biotechniques.

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In prep. Chiang, T., J. A. Koester, C. Berhtiaume, N. Hiranuma, M. S. Parker, V. Iverson, R. Morales, A. Sarwate, W. L. Ruzzo, E. V. Armbrust. A globally dispersed eukaryotic marine microbe expanded clonally. For submission to Nature.

In prep. Turner, Jeffry W., Chris Berthiaume, Rhonda Morales, E. Virginia Armbrust, Mark S. Strom. Recombination and selection shape the diversity and evolution of Vibrio parahaemolyticus. For submission to ISME Journal.

99. 2015 Mock, T. , R. P. Otillar, J. Strauss, A. E. Allen, C. L. Dupont, S. Frickenhaus, F. Maumus, M. McMullan, A. Salamov, R. Sanges, J. Schmutz, A. Toseland, A. Veluchamy, B.J. Ward, K. W. Barry, A. Falciatore, M. I. Ferrante, A. E. Fortunato, G. Glöckner, A. Gruber, R. Hipkin, M. G. Janech, P. Kroth, F. Leese, E. A. Lindquist, B. R. Lyon, J. Martin, C. Mayer, M. Parker, H. Quesneville, J. A. Raymond, C. Uhlig, R. E. Valas, K. U. Valentin, A. Z. Worden, E. V. Armbrust, C. Bowler, B. R. Green, V. Moulton, C. van Oosterhout, I. V. Grigoriev. Extensive genetic diversity and differential bi-allelic expression in a Southern Ocean diatom. Nature, in revision.

98. 2015 Qin, Wei, Laura T. Carlson, E. Virginia Armbrust, Allan H. Devol, James W. Moffett, David A. Stahl and Anitra E. Ingalls. Confounding effects of oxygen and temperature on the TEX86 signature of marine thaumarchaeota. Proceedings National Academy of Science, USA, in revision.

97. 2015 Groussman, R. D., M.S. Parker, E. V. Armbrust. Diversity and evolutionary history of iron metabolism genes in diatoms. PloS One, in revision.

96. 2015 Ribalet, F., Swalwell, J., C. Ellis, V. Jimenez, L. Yajuan, Z. Johnson, A. Z. Worden and E. V. Armbrust. Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. Proceedings National Academy of Science, USA, in revision.

95. 2015 Armbrust, E. V., S. R. Palumbi. Tara Oceans Expedition: Uncovering hidden worlds of ocean biodiversity. Science, in press.

94. 2015 Amin, S.A., L. R. Hmelo, H. van Tol, B. Durham, L. Truxal, K. Heal, R. Morales, C. Berthiaume, B. Djunaedi, M. A. Moran, A. Ingalls, M. Parsek, and E.V. Armbrust. Interaction and signaling between a cosmopolitan phytoplankton and associated bacteria. Nature, in press.

93. 2015 Hennon, G. M. M., Justin Ashworth, Chris Berthiaume, Rhonda L. Morales, Nitin Baliga, Monica Orellana, E. V. Armbrust. Diatom acclimation to elevated CO2 via novel gene clusters and cAMP-signaling. Nature Climate Change, in press.

92. 2015 Durham, B. P., S. Sharma, H. Luo, C. B. Smith, S. Amin, S. J. Bender, S. P. Dearth, B. A. S. Van Mooy, S. R. Campagna, E. B. Kujawinksi, E. V. Armbrust, M. A. Moran. Cryptic elemental cycling between marine bacteria and phytoplankton. Proceedings National Academy of Science, USA, 112: 453-457.

91. 2015 Martens-Habbena, W., W. Qin, R. E. A. Horak, H. Urakawa, A. J. Schauer, J. W. Moffett, E. V. Armbrust, A. E. Ingalls, A. H. Devol, and D. A. Stahl. The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger. Environmental Microbiology Reports, DOI: 10.1111/1462-2920.12677.

90. 2015 Gruber, A., G. Rocap, P. G. Kroth, E. V. Armbrust, T. Mock. Predicting plastid

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proteomes of algae with secondary plastids of the red lineage. The Plant Journal, DOI: 10.1111/tpj.12734.

89. 2014 Armbrust, E. V. Taking the pulse of ocean microbes. Science 345:134-135. 88. 2014 Heal, K. R., L. T. Carlson, A. Devol, E. V. Armbrust, J. W. Moffett, D. A. Stahl, A. E.

Ingalls. Detemination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography tandem mass spectrometry. Rapid Communications in Mass Spectrometry 28: 2398–2404.

87. 2014 Keeling, P. J., F. Burki, B. Allam, E. Allen, L. A. Amaral-Zettler, E. V. Armbrust, J. M. Archibald, A. K. Bharti, C. J. Bell, B. Beszteri, K. D. Bidle, C. T. Cameron, D. A. Caron, J. Collier, K. Coyne, L. Campbell, R. A. Cattolico, Phillipe Deschamps, Sonya T. Dyhrman, B. Edvardsen, R. Gates, C. Gobler, S. Greenwood, S. M. Guida, J. Hackett, J. L. Jacobi, K. S. Jakobsen, B. Jenkins, M. D. Johnson, U. John, A. Juhl, A. Kamp, L. Katz, A. Kudryavtsev, Senjie Lin, C. Lovejoy, D. Lynn, A. Marchetti, C. Miceli, F. Morel, G. McManus, M. Montresor, M. A. Moran, S. Murray, S. Menden-Deuer, T. Mock, A. Nedelcu, G. Nadathur, S. Nagai, P. B. Ngam, K. Pelletreau, B. Palenik, G. Piganeau, J. Pawlowski, M. C. Posewitz, G. Romano, K. Rengefors, T. Rynearson, K. B. Schilling, S. Smith , A. Simpson, P. Stief, C. H. Slamovits, D. Schroeder, G. J. Smith, H. M. Sosik, E. Theriot, P. E. Umale, G. Wheeler, B. Wawrik, W. Wilson, A. Zingone, H. M. Wilcox, and A. Z. Worden. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PloS Biology 12(6): e1001889. doi:10.1371/journal.pbio.1001889.

86. 2014 Bowman, J. S., C. T. Berthiaume, E. V. Armbrust, J. W. Deming. The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis. FEMS Microbiology Ecology DOI: 10.1111/1574-6941.12331.

85. 2014 Qin, W., S. A. Amin, W. Martens-Habbena, H. Urakawa, A. H. Devol, A. E. Ingalls, J. W. Motet, E. V. Armbrust, and D. A. Stahl. Novel isolates of marine oxidizing archaea display wide ecotypic variation. Proceedings National Academy of Science, USA 111:12504-12509.

84. 2014 Hubbard, K. A., C. H. Ellis and E. V. Armbrust. Molecular characterization of Pseudo-nitzschia community structure and species ecology in a hydrographically complex estuarine system (Puget Sound, Washington, USA). Marine Ecology and Progress Series 507: 39–55.

83. 2014 Bender, S.J., C.A. Durkin, C. Berthiaume, R. Morales, and E.V. Armbrust. Transcriptional responses of three model diatoms to nitrate limitation. Frontiers in Marine Science: Aquatic Microbiology doi: 10.3389/fmars.2014.00003.

82. 2014 Jacquot, Jeremy E., Rachel E. A. Horak, Maija Heller, Shady A. Amin, Allan Devol, Anitra E. Ingalls, E. Virginia Armbrust, David A. Stahl, and James W. Moffett. 2014. The influence of copper bioavailability on nitrification in a dynamic estuary. Marine Chemistry 162:37 - 49.

81. 2014 Hennon, Gwenn M. M., Paul Quay, Rhonda L. Morales, Lyndsey M. Sandwick, E. Virginia Armbrust. Acclimation conditions modify physiological response of the diatom Thalassiosira pseudonana to elevated CO2 concentrations in a nitrate-limited chemostat. Journal of Phycology DOI: 10.1111/jpy.12156.

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80. 2013 Halperin, D., K. Weitz, B. Howe, F. Ribalet and E. V. Armbrust. Real-Time Collaborative Analysis with (Almost) Pure SQL: A Case Study in Biogeochemical Oceanography. Proceedings of the 25th International Conference on Scientific and Statistical Database Management 28:1-12.

79. 2013 Amin, S.A., J. W. Moffett, W. Martens-Habbena, R. E. Horak, A. E. Ingalls, A. Devol, D. A. Stahl, E. V. Armbrust. Copper limitation and toxicity in the marine ammonia oxidizing archaeon Nitrosopumilus maritimus. Limnology and Oceanography 58:2037-2045.

78. 2013 Palevsky, H. I., F. Ribalet, Swalwell, J.E., C. Cosca, E. D. Cokelet, P. D. Quay, E. V. Armbrust, R. A. Feely. The influence of net community production and phytoplankton community structure on CO2 uptake in the Gulf of Alaska. Global Biogeochemical Cycles doi:10.1002/gbc.20058.

77. 2013 Port, Jesse A. Micaela S. Parker, Robin B. Kodner, Xiaozhong Yu, E. Virginia Armbrust, and Elaine M. Faustman. G-protein coupled receptor signaling pathway conservation in sequenced marine diatoms. BMC Genomics 10.1186/1471-2164-14-503.

76. 2013 Horak, R. E. A., W. Qin, E. V. Armbrust, A. Ingalls, J. W. Moffett, D. A. Stahl, and A. Devol. Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea. ISME J, doi: 10.1038/ismej.2013.75.

75. 2013 Howe, B., F. Ribalet, S. Chitnis, E. V. Armbrust. SQLShare: Scientific workflow management via relational view sharing. Computing in Science and Engineering 15:22-31.

74. 2013 Durkin, C. A., S. J. Bender, K. Y. K. Chan, K. Gaessner, D. Grunbaum, E. V. Armbrust. Silicic acid supplied to coastal diatom communities influences cellular silicification and the potential export of carbon. Limnology and Oceanography 58:1707-1726.

73. 2013 Ashworth, J., S. Coesel, A. L., E. V. Armbrust, M. V. Orellana, N. S. Baliga Molecular signatures of cell state transitions along the diurnal growth curve of a diatom. Proceedings National Academy of Science 110: 7518-7523.

72. 2012 Curtis, B. A., G. Tanifuji, F. Burki, A. Gruber, M. Irimia, S. Maruyama, M. C. Arias, S. G. Ball, G. H. Gile, Y. Hirakawa, J. F. Hopkins, A. Kuo, S. A. Rensing, J. Schmutz, A. Symeonidi, M. Elias, R. J. M. Eveleigh, E. K. Herman, M. J. Klute, T. Nakayama, M. Oborník, A. Reyes-Prieto, E. V. Armbrust, S. J. Aves, R. G. Beiko, P. Coutinho, J. B. Dacks, D. G. Durnford, N. M. Fast, B. R. Green, C. Grisdale, F. Hempel, B. Henrissat, M. P. Höppner, K.-I. Ishida, E. Kim, L. Kořený, P. G. Kroth, Y. Liu, S.-B. Malik, U. G. Maier, Darcy McRose, T. Mock, J. A. D. Neilson, N. T. Onodera, A. M. Poole, E. J. Pritham, T. A. Richards, G. Rocap, S. W. Roy, C. Sarai, S. Schaack, S. Shirato, C. H. Slamovits, D. F. Spencer, S. Suzuki, A. Z. Worden, S. Zauner, K. Barry, C. Bell, A. K. Bharti, J. A. Crow, J. Grimwood, Robin Kramer, E. Lindquist, S. Lucas, A. Salamov, G. I. McFadden, C. E. Lane, P. J. Keeling, M. W. Gray, I. V. Grigoriev, J. M. Archibald. Algal nuclear genomes reveal evolutionary mosaicism and fate of nucleomorphs. Nature 492:59-65.

71. 2012 Koester, J. A., W. J. Swanson, E. V. Armbrust. Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation. Molecular

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Biology and Evolution doi:10.1093/molbev/mss242. 70. 2012 Durkin, C.A., A. Marchetii, S. J. Bender, T. Truong, R. Morales, T. Mock, and E. V.

Armbrust. The influence of frustule-related gene transcription and diatom community composition on silica precipitation in an iron-limited environment. Limnology and Oceanograpy 57:1619-1633.

69. 2012 Amin, S. A., M.S. Parker, E. V. Armbrust. Diatom-bacteria interactions. Microbiology and Molecular Biology Reviews 76:667-684.

68. 2012 Marchetti A., D. Schruth, C.A. Durkin, M. S. Parker, R. Kodner, C. T. Berthiaume, R. Morales, Allen, A. E., and E. V. Armbrust. Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability. Proceedings National Academy of Science Plus, USA, doi: 10.1073/pnas.1118408109.

67. 2012 Iverson, V., R. M. Morris, C. D. Frazer, C. T. Berthiaume, R. L. Morales and E. V. Armbrust. Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota. Science 335:587-590.

66. 2012 Bender, S. J., M. S. Parker, E. V. Armbrust. The coupled effects of light and nitrogen source on the urea cycle and nitrogen metabolism over a diel cycle in the marine diatom Thalassiosira pseudonana. Protist (2011), doi:10.1016/j.protis.2011.07.008.

65. 2011 Monier, A., R. Welsh, C. Gentemann, G. Weinstock, E. V. Armbrust, J. A. Eisen and A. Z. Worden. Phytoplankton phosphate uptake and cross-domain commonalities in viral-host exchange. Environmental Microbiology 14:162-176.

64. 2011 Swalwell, J. E., F. Ribalet, and E. V. Armbrust. SeaFlow: A novel underway flow-cytometer for continuous observations of phytoplankton in the ocean. Limnology & Oceanography: Methods 9:466-477.

63. 2011 Ribalet, F., D. M. Schruth, and E. V. Armbrust. flowPhyto: enabling automated analysis of microscopic algae from continuous flow cytometric data. Bioinformatics 2011; doi: 10.1093/bioinformatics/btr003.

62. 2010 Matsen, F. A., R. B. Kodner, and E. V. Armbrust. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics, 11:538 doi:10.1186/1471-2105-11-538.

61. 2010 Ribalet, F., A. Marchetti, K. A. Hubbard, K. Brown, C. A. Durkin, R. Morales, M. Robert, J. E. Swalwell, P. D. Tortell, and E. V. Armbrust. Unveiling a phytoplankton hotspot at a narrow boundary between coastal and offshore waters. Proceedings National Academy of Science, USA 107: 16571–16576.

60. 2010 Maheswari, U., K. Jabbari, A. E. Allen, J.-P. Cadoret, A. De Martino, M. Heijde, M. Katinka, J. La Roche, P. J. Lopez, V. Martin–Jézéquel, T. Mock, J.-L. Petit, B. M. Porcel, M. S. Parker, A. Vardi, E. V. Armbrust, J. Weissenbach and C. Bowler. Digital expression profiling of novel diatom transcripts provides insight into their biological functions. Genome Biology 11:doi:10.1186/gb-2010-11-8-r85.

59. 2010 Sosik, H. M., R. J. Olson, and E. V. Armbrust. Flow cytometry in plankton research. In D. J. Suggett, O. Prasil and M. A. Borowitzka [eds.], Chlorophyll a Fluorescence in Aquatic Sciences: Methods and Applications. Springer.

58. 2010 Koester, J., J. Swallwell, and E. V. Armbrust. Genome size differentiates populations of

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the planktonic diatom Ditylum brightwellii. BMC Evolutionary Biology 10:1doi:10.1186/1471-2148-10-1.

57. 2010 Holtermann, K. E., S. S. Bates, V. L. Trainer, A. Odell, E. V Armbrust. Mass Sexual Reproduction in the Toxigenic Diatoms Pseudo-nitzschi australis and P. pungens (Bacillariophyceae) on the Washington Coast, USA. Journal of Phycology 46:41-52.

56. 2010 Marchetti, A., D. E. Varela, V. Lance, Z. Johnson M. Palmucci, M. Giordano and E. V. Armbrust. Iron and silicic acid effects on phytoplankton productivity, diversity, and chemical composition in the central equatorial Pacific Ocean. Limnology and Oceanography 55:11-29.

55. 2009 Carpenter, S. R., E. V. Armbrust, P. W. Arzberger, F. S. Chapin, III, J. J. Elser, E. J. Hackett, A. R. Ives, P. M. Kareiva, M. A. Leibold, P. Lundberg, M. Mangel, N. Merchant, W. W. Murdoch, M. A. Palmer, D. P. C. Peters, S. T. A. Pickett, K. K. Smith, D. H. Wall, A. S. Zimmerman. Synthesis must be accelerated in ecology and environmental sciences. BioScience 59:699-701.

54. 2009 Durkin, C., T. Mock and E. V. Armbrust. Chitin in diatoms and its association with the cell wall. Eukaryotic Cell 8: 1038-1050.

53. 2009 Armbrust, E. V. The life of diatoms in the world’s oceans. Nature 459:185-192. 52. 2009 Worden, A.Z., J-H. Lee, T. Mock, P. Rouzé, M.P. Simmons, A.L. Aerts, A.E. Allen,

M.L. Cuvelier, E. Derelle, M.V. Everett, E. Foulon, J. Grimwood, H. Gundlach, B. Henrissat, C. Napoli1, S.M. McDonald, M.S. Parker, S. Rombauts, A. Salamov, P. Von Dassow, J.H. Badger, P.M. Coutinho, E. Demir, I. Dubchak, C. Gentemann, W. Eikrem, J.E. Gready, U. John, W. Lanier, E.A. Lindquist, S. Lucas, K.F.X. Mayer, H. Moreau, F. Not, R. Otillar, O. Panaud, J. Pangilinan, I. Paulsen, B. Piegu, A. Poliakov, S. Robbens, J. Schmutz, E. Toulza, T. Wyss, A. Zelensky, K. Zhou, E.V. Armbrust, D. Bhattacharya, U.W. Goodenough, Y. Van de Peer, and I.V. Grigoriev. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 324:268-272.

51. 2009 Rynearson, T. A., E. O. Lin and E. V. Armbrust. Metapopulation structure in the planktonic diatom Ditylum brightwellii (Bacillariophyceae). Protist 160:111-121.

50. 2009 Marchetti, A., M. S. Parker, L. P. Moccia, E. O. Lin, A. L. Arrieta, F. Ribalet, M. E. P. Murphy, M. T. Maldonando and E. V. Armbrust. Ferritin is used for iron storage in bloom-forming marine pennate diatoms. Nature 457:467-470.

49. 2008 Maheswari, U., Mock, T., Armbrust, E. V., Bowler, C. Update of the diatom EST database: a new tool for digital transcriptomics. Nucleic Acids Research doi: 10.1093/nar/gkn905.

48. 2008 Parker, M. S., T. Mock and E. V. Armbrust. Genomic insights into marine microalgae. Annual Review of Genetics 42: 619-645.

47. 2008 Smarr, L., P. Gilna, P. Papadopoulos, T. A. DeFanti, G. Hidley, J. Wooley, E. V. Armbrust, F. Rohwer, E. Frost. Building an OptIPlanet collaboratory to support microbial metagenomics. Future Generation Computer Systems doi:10.1016/j.future.2008.06.009.

46. 2008 Bowler C., A. E. Allen, J. H. Badger, J. Grimwood, K. Jabbari, A. Kuo, U. Maheswari1, C. Martens, F. Maumus, R. P. Otillar, E. Rayko, A. Salamov, K.

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Vandepoele, B. Beszteri, A. Gruber, M. Heijde, M. Katinka, T. Mock, K. Valentin, F.Vérret, J. A. Berges, C. Brownlee, J.-P. Cadoret, A. Chiovitti,C. J. Choi, S. Coesel, A. De Martino, J. C. Detter, C. Durkin, A. Falciatore, J. Fournet, M. Haruta, M. Huysman, B. D. Jenkins, K. Jiroutova, R. E. Jorgensen, Y. Joubert, Aaron Kaplan, N. Kroeger, P. Kroth, J. La Roche, E. Lindquist, M. Lommer,V. Martin-Jézéquel, P. J. Lopez, S. Lucas, Manuela Mangogna, K. McGinnis, L. K. Medlin, A. Montsant, M.-P. Oudot-Le Secq, C. Napoli, M. Obornik, J.-L. Petit, B. M. Porcel, N. Poulsen, M. Robison, L. Rychlewski, T. A. Rynearson, J. Schmutz, M. S. Parker, H. Shapiro, M. Siaut, M. Stanley, M. J. Sussman, A. Taylor, A. Vardi, P. von Dassow, W. Vyverman, A. Willis, L. S. Wyrwicz, D. S. Rokhsar, J. Weissenbach, E. V. Armbrust, B. R. Green, Y. Van de Peer, I. V. Grigoriev. The Phaeodactylum genome reveals the dynamic nature and multi-lineage evolutionary history of diatom genomes. Nature 456: 239 - 244.

45. 2008 Svderup, K. and E. V. Armbrust. An Introduction to the World’s Oceans, 10th edition, McGraw Hill.

44. 2008 Nuwer, M., B. W. Frost and E. V. Armbrust. Population structure of the pelagic copepod Calanus pacificus in the North Pacific Ocean. Marine Biology DOI 10.1007/s00227-008-1068-y.

43. 2008 Iglesias-Rodriguez, M. D., P. R. Halloran, R. E. M. Rickaby, I. R. Hall, E. Colmenero-Hidalgo, J. R. Gittins, D. R. H. Green, T. Tyrrell, S. J. Gibbs, P. von Dassow, E. Rehm, E. V. Armbrust, K. P. Boessenkool. Phytoplankton calcification in a high CO2 world. Science 320:336-340.

42. 2008 Marchetti, A., N. Lundholm, Y. Kotaki, K.A. Hubbard, P. J. Harrison, and E. V. Armbrust. Identification and assessment of domoic acid production in oceanic Pseudo-nitzschia (Bacillariophyceae) from HNLC waters in the northeast subarctic Pacific. Journal of Phycology 44: 650-661

41. 2008 Hubbard, K.A., G. Rocap, and E.V. Armbrust. Inter- and intra-specific community structure within the diatom genus Pseudo-nitzschia. Journal of Phycology 44:637-649.

40. 2008 von Dassow, P., T. W. Petersen, V. A. Chepurnov, and E. V. Armbrust. Inter- and intraspecific relations between nuclear DNA content and cell size in selected members of Thalassiosira (Bacillariophyceae). Journal of Phycology 44:335-349.

39. 2008 Mock, T., M. P. Samanta, V. Iverson, C. Berthiaume, M. Robison, K. Holtermann, C. Durkin, S. Splinter BonDurant, K. Richmond, M. Rodesch, F. Cerrina, M. R. Sussman, E. V. Armbrust. Whole genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses. Proceedings National Academy of Science, USA 105:1579-1584.

37. 2008 Kroth, P. G., A. Chiovitti, A. Gruber, V. Martin-Jezequel, T. Mock, M. S. Parker, M. S. Stanley, M. S. Stanley, A. Kaplan, L. Caron, T. Weber, U. Maheswari, E. V. Armbrust and C. Bowler. A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis. PLoS ONE 3(1): e1426. doi:10.1371/journal.pone.0001426.

36. 2007 Moran, M.A. and E. V. Armbrust. Genomes of Sea Microbes. Oceanography, June 2007, 47-55.

35. 2007 Lau, W.W.Y., R. G. Keil, and E. V. Armbrust. Response and succession of the

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glycolate-utilizing component of the bacterial community during a spring phytoplankton bloom. Applied and Environmental Microbiology 73:2440-2450.

34. 2007 Oudot-Le Secq, M.-P., J. Grimwood, H. Shapiro, C. Bowler, E.V. Armbrust and B. R. Green. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: Comparison with other plastid genomes of the red lineage. Molecular Genetics and Genomics 277:427- 439.

33. 2007 Montsant, A. A. E. Allen, S. Coesel, A. De Martino, A. Falciatore, M. Heijde, K. Jabbari, U. Maheswari, M. Mangogna, E. Rayko, M. Siaut, A. Vardi, K. E. Apt, J. A. Berges, A. Chiovitti, A. K. Davis, M. Z. Hadi, T. W. Lane, J. C. Lippmeier, D.Martinez, M. S. Parker, G. J. Pazour, M. A. Saito, K. Thamatrakoln, D. S. Rokhsar, E. V. Armbrust, C. Bowler. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana. Journal of Phycology 43:585-604.

32. 2006 Unal, E., B. W. Frost, E. V. Armbrust, and A. E. Kideys. Phylogeography of Calanus helgolandicus and the Black Sea copepod Calanus euxinus, with notes on Pseudocalanus elongates (Copepoda, Calanoida). Deep Sea Research II 53:1961-1975.

31. 2006 Chepurnov, V. A., D. G. Mann, P. von Dassow, E. V. Armbrust, K. Sabbe, R. Dasseville, and W. Vyverman. Oogamous reproduction, with two-step auxosporulation, in the centric diatom Thalassiosira punctigera (Bacillariophyta). Journal of Phycology 42:845-858

30. 2006 von Dassow, P., V. Chepurnov, E. V. Armbrust. Relationships between growth rate, cell size, and induction of spermatogenesis in the centric diatom Thalassiosira weissflogii (Bacillariophyta). Journal of Phycology 42:887-899.

29. 2006 Svderup, K. and E. V. Armbrust. An Introduction to the World’s Oceans, 9th edition, McGraw Hill.

28. 2006 Rynearson, T. A. and E.V. Armbrust. Succession, bloom development and genetic variation in Ditylum brightwellii during the spring growth season. Limnology and Oceanography 51:1249-1261.

27. 2006 Lau, W.W.Y. and E. V. Armbrust. Detection of glycolate oxidase gene glcD diversity among cultured and environmental marine bacteria. Environmental Microbiology 8:1688-1702.

26. 2006 Armbrust, E. V., T. A. Rynearson and B.D. Jenkins. Genomic Insights into Diatom Evolution and Metabolism. In: Genome Evolution in Eukaryotic Microbes, edited by Laura A. Katz and Debashish Bhattacharya.

25. 2005 Parker, M. S. and E. V. Armbrust. Synergistic effects of light, temperature and nitrogen source on transcription of genes for carbon and nitrogen metabolism in the centric diatom Thalassiosira pseudonana (Bacillariophyceae). Journal of Phycology 41:1142–1153. *Note: Article will be highlighted in this issue with an introductory article. Article was awarded the “Provasolli award” for best article of 2005.

24. 2005 Rynearson, T. A. and E. V. Armbrust. Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii. Molecular Ecology 14:1631-1640.

23. 2005 Paffenhofer, G.A., A. Iaora, A. Miralto, J. T. Turner, G.S. Kleppel, M. R. D’Alcala, R. Casotti, G. S. Caldwell, G. Pohnert, A. fntana, D. Muller-Navarra, S. E. Jonasdottir, E.

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V. Armbrust, U. Bamstedt, S. Ban, M. G. Bentley, M. Boersma, M. Bundy, I. Buttino, A. Calbet, F. Carlotti, Y. Carotenuto, G. d’Ippolito, B. Frost, G. Guisande, W. Lampert, R. F. Lee, S. Mazza, M. G. Massocchi, J. C. Nejstgaard, S. A. Poulet, G. Romano, V. Smetacek, S. Uye, S. Wakeham, S. Watson, T. wichard. Colloquium on diatom-copepod interactions. Marine Ecology Progress Series 286:293-305.

22. 2004 Armbrust, E. Virginia, John A Berges, Chris Bowler, Beverley R. Green, Diego Martinez, Nicholas H. Putnam, Shiguo Zhou, Andrew E. Allen, Kirk E. Apt, Michael Bechner, Mark A. Brzezinski, Balbir K. Chaal, Anthony Chiovitti, Aubrey K.Davis, Mark S. Demarest, J. Chris Detter, Tijana Glavina, David Goodstein, Masood Z. Hadi, Uffe Hellsten, Mark Hildebrand, Bethany D. Jenkins, Jerzy Jurka, Vladimir V. Kapitonov, N. Kröger, Winnie W.Y. Lau, Todd W. Lane, Frank W. Larimer, J. Casey Lippmeier, Susan Lucas, Mónica Medina, Anton Montsant, Miroslav Obornik, Micaela Schnitzler Parker, B. Palenik, Gregory J. Pazour, Paul M. Richardson, Tatiana A. Rynearson, Mak A. Saito, David C. Schwartz, Kimberlee Thamatrakoln, Klaus Valentin, Assaf Vardi, Frances P. Wilkerson, and D. S. Rokhsar. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306:79-86.

21. 2004 Parker, M. S., E. V. Armbrust, J. Piovia-Scott and R G. Keil. Light regulation of a photorespiratory gene (glycine decarboxylase) in the centric diatom Thalassiosira weissflogii (Bacillariophyceae). Journal of Phycology 40:557-567.

20. 2004 Rynearson, T. A. and E. V. Armbrust. Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii (bacillariophyceae). Journal of Phycology 40:34-43.

19. 2002 Lau, W. W. Y., P. A. Jumars, E. V. Armbrust. Genetic diversity of attached bacteria in the hindgut of the deposit-feeding shrimp Neotrypaea (formerly Callianassa) californiensis (Decapoda: Thalassinidae). Microbial Ecology 43:455-466.

18. 2002 Ferris, P. J., E. V. Armbrust, U. W. Goodenough. Genetic structure of the mating-type loci of Chlamydomonas reinhardtii. Genetics 160: 181-200.

17. 2001 Campbell, A. M., A.J. Coble, T.H. Ch'ng, K.M. Russo, E.M. Long, and E. V. Armbrust. Identification and DNA sequence of a new H+-ATPase in the unicellular green alga Chlamydomonas reinhardtii. Journal of Phycology 37:536-542. 2001

16. 2001 Armbrust, E. V. and H. M. Galindo. Rapid evolution of a sexual reproduction gene in centric diatoms of the genus Thalassiosira. Applied and Environmental Microbiology, 67:3501-3513.

15. 2000 Armbrust, E. V. Structural features of nuclear genes in the centric diatom Thalassiosira weissflogii (Bacillariophyceae). Journal of Phycology 36:942-946.

14. 2000 Rynearson, T. A. and E. V. Armbrust. DNA fingerprinting reveals extensive genetic diversity in a field population of the centric diatom Ditylum brightwellii. Limnology and Oceanography 45:1329-1340.

13. 1999 Armbrust, E.V. Identification of a novel gene family expressed during the onset of sexual reproduction in the centric diatom Thalassiosira weissflogii. Applied and Environmental Microbiology 65:3121-3128.

12. 1999 Crump, B. C., E. V. Armbrust, J. A. Baross. Phylogenetic analysis of particle-attached

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and free-living bacterial communities in the Columbia River estuary and adjacent coastal ocean. Applied and Environmental Microbiology 65:3192-3204.

11. 1998 Armbrust, E.V. Uniparental inheritance of Chloroplast Genomes. In: Molecular Biology of Chlamydomonas: Chloroplasts and Mitochondria, J.-D. Rochaix, M. Goldschmidt-Clermont, S. Merchant, Eds., Kluwer Academic Publishers.

10. 1995 Armbrust, E.V., A. Ibrahim, U.W. Goodenough. A mating type-linked mutation that disrupts the uniparental inheritance of the chloroplast genome also disrupts cell size control in Chlamydomonas. Molecular Biology of the Cell 6(12):1807-1818.

9. 1995 Goodenough, U.W., E.V. Armbrust, A.M. Campbell, P.J. Ferris. Molecular genetics of sexuality in Chlamydomonas. Annual Review of Plant Physiology and Plant Molecular Biology 46:21-44.

8. 1993 Armbrust, E.V., P.J. Ferris, U.W. Goodenough. A mating type-linked gene cluster expressed in Chlamydomonas zygotes participates in the uniparental inheritance of the chloroplast genome. Cell 74:801-811.

7. 1992 Armbrust, E.V. and S.W. Chisholm. Patterns of cell size change in a marine diatom: variability evolving from clonal isolates. Journal of Phycology 28:146-156.

6. 1990 Armbrust, E.V., R.J. Olson, S.W. Chisholm. Role of light and the cell cycle on the induction of spermatogenesis in a centric diatom. Journal of Phycology 26:470-478.

5. 1990 Olson, R.J., S.W. Chisholm, E.R. Zettler, E.V. Armbrust. Pigments, size and distributions of Synechococcus in the North Atlantic and Pacific Oceans. Limnology and Oceanography 35:45-58.

4. 1989 Armbrust, E.V., J.D. Bowen, R.J. Olson, S.W. Chisholm. Effect of light on the cell cycle of a marine Synechococcus strain. Applied and Environmental Microbiology 55(2):425-432.

3. 1988 Olson, R.J., S.W Chisholm, E.R. Zettler, E.V. Armbrust. Analysis of Synechococcus pigment types in the sea using single and dual beam flow cytometry. Deep Sea Research 35(3):425-440.

2. 1987 Anderson, D.M., C.D. Taylor, E.V. Armbrust. The effects of darkness and anaerobiosis on dinoflagellate cyst germination. Limnology and Oceanography 32(2):340-351.

1. 1986 Chisholm, S.W., E.V. Armbrust, R.J. Olson. The individual cell in phytoplankton ecology: cell cycles and flow cytometry. p. 343-369. In: T. Platt and W. K. W. Li [Eds.] Photosynthetic Picoplankton, Can. Bull. Fish. Aq. Sci. #214.

Invited Conference Talks (since 1996) 2015 Devol, A., R. Horak, A. I. Ingalls, E. V. Armbrust, J. Moffett, D. Stahl. Measurements

of ammonia oxidation and nitrite oxidation in the north Pacific Ocean. American Society for Limnology and Oceanography Annual Meeting.

2015 Amin, S. A., L. R. Hmelo, B. P. Durham, H. M. van Tol, L. T. Carlson, K. R. Heal, A. I. Ingalls, M. R. Parsek, M. A. Moran, E. V. Armbrust. Interaction and signaling between a cosmopolitan diatom and associated bacteria. American Society for Limnology and Oceanography Annual Meeting.

2015 Hamilton, M. M., G. M. Hennon, R. Morales, J. A. Needoba, T. Peterson, M. Schatz, J. Swalwell, P. Zuber, E. V. Armbrust, F. Ribalet. Investigating the interactions between

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the ciliate Mesodinium major and cryptophyte algae in the Columbia River estuary. American Society for Limnology and Oceanography Annual Meeting.

2015 Hmelo, L. R. S. Amin, B. S. Tseng, J. J. Harrison, H. van Tol, E. V. Armbrust, M. R. Parsek. Biofilm formation is an important factor in the synergistic relationship between sulfitobacter strain SA11 and Pseudo-nitzschia multiseries. American Society for Limnology and Oceanography Annual Meeting.

2015 Hennon, G. M., E. Howard, F. Ribalet, R. Stanley, E. V. Armbrust. Continuous flow cytometry and gas flux measurements across nutrient and temperature gradients in the Atlantic Ocean. American Society for Limnology and Oceanography Annual Meeting.

2015 Ribalet, F., C. Berthiaume, S. Clayton, D. Halperin, B. Howe, J. Swalwell, E. V. Armbrust. Probing the structure of complex ocean microbe communities. American Society for Limnology and Oceanography Annual Meeting.

2014 Ribalet, F. J. Swalwell, S. Clayton, V. Jiminez, S. Sudek, L. Yajuan, Z. Johnson, A. Worden, E. V. Armbrust. Coupling of growth and loss dynamic of Prochlorococcus in the northeast Pacific Ocean. Joint Aquatic Sciences Meeting.

2014 Bender, S.J., M. S. Parker, B. P. Durham, R. Groussman, E. V. Armbrust. Transcriptional responses of diatom assemblages to nitrogen availability in the northeast Pacific Ocean. Joint Aquatic Sciences Meeting.

2014 Qin, W., S. A. Amin, W. Martens-Habbena, C. B. Walker, H. Urakawa, A. H. Devol, A. E. Ingalls, J. W. Moffett, E. V. Armbrust, D. A. Stahl. High ecophysiological diversity among closely related marine ammonia-oxidizing archaea. Joint Aquatic Sciences Meeting.

2014 Ashworth, J., M. V. Orellana, A. Lee, E. V. Armbrust, N. S. Baliga. Multifactorial responses to increased CO2 in T. pseudonana: Potential impacts of ocean acidification on diatom carbon and nutrient cycling. American Society for Limnology and Oceanography Annual Meeting.

2014 Marchetti, A., C. M. Moreno, I. Oleinikov, K. A. Hubbard, E. V. Armbrust. Comparative transcriptomics and the development of a molecular indicator for iron status in an oceanic pennate diatom. American Society for Limnology and Oceanography Annual Meeting.

2014 Marshall, K. T., V. Iverson, E. V. Armbrust, R. L. Morales, R. M. Morris. The complete genome sequence of Thioglobus singularis reveals novel evolutionary adaptations of carbon and sulfur metabolisms in The Sup05/Arctic96bd-19 clade. American Society For Limnology And Oceanography Annual Meeting.

2014 Groussman, R. D., M. S. Parker, E. V. Armbrust. Diversity of diatom iron metabolism genes revealed through whole transcriptome sequencing. American Society For Limnology And Oceanography Annual Meeting.

2013 Armbrust, E. V. GeoMICS: A geochemical and molecular study of marine transition zones. American Society for Limnology and Oceanography annual meeting.

2013 Hennon, G.M and E. V. Armbrust. Acclimated physiology and gene expression of the diatom Thalassiosira pseudonana under elevated CO2. American Society for Limnology and Oceanography annual meeting.

2013 Bender, S.J., C.A. Durkin, B.P. Durham, C. Berthiaume, E.V. Armbrust. Nitrogen transporters in laboratory transcriptomes and field metatranscriptomes reveal species-specific metabolic responses of diatoms to nitrogen availability. American Society for Limnology and Oceanography annual meeting.

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2013 Amin, S. A., L. R. Hmelo, H. van Tol, M.S. Parker, M. Parsek, E. V. Armbrust. Whole-cell transcriptomics reveal multiple complex interactions between a toxigenic diatoms and a mutualistic bacterium. American Society for Limnology and Oceanography annual meeting.

2013 Parker, M. S., F. Maumus, E.V. Armbrust. Stress activated transposons in the domoic acid producing diatom Pseudo-nitzschia multiseries. American Society for Limnology and Oceanography annual meeting.

2013. van Tol, H.M., S. A. Amin and E. V. Armbrust. Comparative genomics reveal potential niche-specific adpatations of Croceibacter atlanticus to diatom cell surface. American Society for Limnology and Oceanography annual meeting.

2013 Hmelo, L.R., S. Amin, E. V. Armbrust, M. Parsek. Investigation of the role of bacterial communication in the synergistic relationship between Sulfitobacter strain SA11 and Pseudo-nitzschia multiseries.

2013 Horak, R.E., A. Devol, W. Qin, E. V. Armbrust, A.E. Ingalls, J. Moffett, D.Stahl. Archaeal ammonia oxidation in a Puget Sound fjord: vertical distribution, kinetics, and temperature dependency. American Society for Limnology and Oceanography annual meeting.

2013 Martin, P., B. Van Mooy, S. Bender, E. V. Armbrust. Ocean sections of polyphosphate and membrane lipids show distinct microbial responses to phosphorous stress and resupply. American Society for Limnology and Oceanography annual meeting.

2012 Amin, S.A., J. W. Moffett, W. Martens-Habbena, R. E. Horak, D. A. Stahl, E. V. Armbrust. Copper limitation and toxicity in the marine ammonia oxidizing archaeon Nitrosopumilus maritimus. American Society for Limnology and Oceanography annual meeting.

2012 Bender, S. J., C. A. Durkin, D. M., Schruth, R. L. Morales, and E. V. Armbrust. Identifying shared responses to nitrate starvation among three diatoms using whole-cell transcriptomics. American Society for Limnology and Oceanography annual meeting.

2011 Ribalet, F, J. Swalwell, E. V. Armbrust. Differential division rates of Prochlorococcus, Synechococcus and PicoEukaryotes across subarctic and subtropical waters. 5th International Conference on Analysis of Microbial Cells at the Single Cell Level.

2011 Hennon, G. M., E. V. Armbrust, M. V. Orellana, N. Baliga, J. Ashworth and A. Lee Acclimated physiology of the diatom Thalassira pseudonana under pre-industrial and future levels of CO2: implications for carbon sequestration. Phycological Society of America Annual Meeting.

2011 Koester, J. A., W. Swanson and E. V. Armbrust. Positive selection is detected within a diatom species and affects regulatory genes. Phycological Society of America Annual Meeting.

2011 Marchetti, A., C. Moreno, I. Oleinikov, I., C. A. Durkin, K. A. Hubbard and E. V. Armbrust. Development of molecular indicators for the iron nutritional status of diatoms. Phycological Society of America Annual Meeting.

2011 Durkin, C. A., A. Marchetti, S. J. Bender, S. J., T. Truong, R. Morales, and E. V. Armbrust. Diversity in iron-limited diatoms has varied effects on silicon cycling. Phycological Society of America Annual Meeting.

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2011 Koester, J. A. and E. V. Armbrust. Darwinian selection is most evident in closely related diatom species. American Society for Limnology and Oceanography annual meeting.

2010 Morris, R. M., Y. S. Ting, V. S. Iverson, B. L. Nunn, D. R. Goodlett, and E. V. Armbrust. Identifying constitutive community functions in seawater. 13th Annual International Symposium on Marine Ecology.

2010 Iverson, V. S., R. M. Morris, C. Frazar, C. Berthiaume, R. Morales, and E. V. Armbrust. Comparative high-throughput metagenomic analysis: A deeper view into microbial diversity, metabolic potential, and community succession. 13th Annual International Symposium on Marine Ecology.

2010 Toseland, A., S Moxon, M. Parker, A. Marchetti, E. V. Armbrust, C. Uhlig, K. Valentin, V. Moulton, T. Mock. . Metatranscriptome analysis of eukaryotic microbial communities from surface waters of different marine ecosystems: from the poles to tropics. Society for General Microbiology.

2010 Hubbard, K. A and E. V. Armbrust. Structuring mechanisms of the toxigenic diatom Pseudo-nitzschia in the Puget Estuary. American Society for Limnology and Oceanography annual meeting.

2010 Koester, J A, C Berthiaume, D Schruth, E. V Armbrust. Seeking a signal of positive evolution in closely related diatom species. American Society for Limnology and Oceanography annual meeting.

2010 Armbrust, E. V., M S Parker. Comparative genomics provides new insights into HAB dynamics. American Society for Limnology and Oceanography annual meeting.

2010 Parker, M S, V S Iverson, C Berthiaume, E O Lin, R Morales, I Oleinikov, M W Knight, D Schruth, E V Armbrust. Intra-species genetic diversity of the centric diatom Thalassiosira pseudonana: Whole genome comparisons of seven strains using massively parallel short-read DNA sequencing. American Society for Limnology and Oceanography annual meeting.

2010 Iverson, V S, R Morris, C Frazar, C Berthiaume, R Morales, E O Lin, V Armbrust. Novel methods for comparative high-throughput metagenomic analysis provide deeper insights into microbial diversity, metabolic potential, and community succession. American Society for Limnology and Oceanography annual meeting.

2010 Marchetti, A. D. Schruth, C. Durkin, R. Morales, C. Berthiaume, M.S. Parker, and E. V. Armbrust. Taxonomic and metabolic shifts in an iron-enriched eukaryotic marine plankton community from the NE Pacific revealed through comparative metatranscriptomics. American Society for Limnology and Oceanography annual meeting.

2010 R Kodner, F A Matsen, S N Evans, V Armbrust. pplacer and mokaphy: new phylogenetic package for accurate sequence identification and statistical comparison of phylogenetic trees for environmental samples. American Society for Limnology and Oceanography annual meeting.

2010 Durkin, C. A., S. J. Bender, T. Truong, A. Marchetti, and E. V. Armbrust. Common cell wall related genes in diatoms and their potential use as biological indicators in changing ocean environments. American Society for Limnology and Oceanography annual

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meeting. 2009 Iverson, V.S., R. M. Morris, C. D. Frazar, C. T. Berthiaume, R. L. Morales, E. O. Lin,

and E.V. Armbrust. Exploring microbial communities fifty gigabases at a time—Novel methods for comparative high-throughput metagenomic analysis provide deeper insights into diversity, metabolic potential, and community succession. Cold Spring Harbor Genome Informatics meeting.

2009 Armbrust, E. V. Iverson, V. S., Morris, R. M., Frazar, C. D., Berthiaume, C. T., Lin, E. O., Morales, R. L., Parker, M. S., Schruth, D. M., Armbrust, E. V. Exploring microbial communities sixteen billion bases at a time: coupled metagenomic-proteomic analyses provide novel insights into diversity. AGTB annual meeting.

2009 Iverson, V. S., Morris, R. M., Frazar, C. D., Berthiaume, C. T., Lin, E. O., Morales, R. L., Parker, M. S., Schruth, D. M., Armbrust, E. V. Exploring microbial communities six billion bases at a time: coupled metagenomic-proteomic analyses provide novel insights into diversity. American Society for Limnology and Oceanography annual meeting.

2009 Kodner, R. B., Armbrust, E. V., Matsen, F. A. Phytoplankton diversity and geologically relevant carbon: using metagenomics to determine phytoplankton biomarker production. American Society for Limnology and Oceanography annual meeting.

2009 Marchetti, A., Parker, M. S., Moccia, L. P., Arrieta, A., Ribalet, F., Murphy, M. E., Maldonado, M. T., Armbrust, E. V. Ferritin is used for iron storage in bloom-forming pennate diatoms – crystal structure and ecological significance in oceanic strains. American Society for Limnology and Oceanography annual meeting.

2009 Durkin, C. A., Marchetti, A., Morales, R., Armbrust, E. V. contribution of different diatom genera to total community silicification in a coastal to open ocean transect and in response to iron fertilization. American Society for Limnology and Oceanography annual meeting.

2009 Bender, S. J., Armbrust, E. V. Effects of nitrogen source and the light:dark cycle on growth and gene expression associated with the urea cycle in Thalassiosira pseudonana. American Society for Limnology and Oceanography summer meeting.

2009 Koester, J. A., Swalwell, J., Armbrust, E. V. Changes in genome size as a mechanism of population divergence in the marine planktonic diatom Ditylum brightwellii. American Society for Limnology and Oceanography annual meeting.

2009 Ribalet, F., Morales, R., Swalwell, J., Marchetti, A., Durkin, C. A., Schruth, D., van den Engh, G., Armbrust, E. V. Patchiness and diel variability of phytoplankton communities in the NE Subarctic Pacific Ocean revealed by continuous-monitoring flow cytometry. American Society for Limnology and Oceanography annual meeting.

2008 Koester, J. A., J. Swalwell, G. van den Engh, E. V. Armbrust. Relationships between DNA content, cell size, and growth rate in populations of the planktonic diatom Ditylum brightwellii. American Society for Limnology and Oceanography summer meeting.

2008 Durkin, C. A., T. Mock, R. L. Marohl, E. V. Armbrust. Chitin as a component of the diatom cell wall. American Society for Limnology and Oceanography annual meeting.

2008 Mock, T., Samanta, M. P., Iverson, V., Berthiaume, C., Robison, M., Holtermann, K., Durkin, C., Splinter BonDurant, S., Richmond, K., Rodesch, M., Sussman, M., E. V.

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Armbrust. Whole genome expression profiling of the marine diatom Thalassiosira pseudonana: new insights into the molecular underpinnings of global-scale processes. American Society for Limnology and Oceanography annual meeting.

2008 Armbrust, E. V. Diatom genomics: new insights into ecology and evolution. American Society for Limnology and Oceanography annual meeting.

2008 Orellana, M. V., L. Hohmann, A. L. Desaki, C. Bare, D. J. Repeta, E. V. Armbrust, N. Baliga. Shotgun proteomics and biomarkers for dissolved organic carbon (DOC) in thet oceans.

2007 Hubbard, K. A. and E. V. Armbrust. Temporal and spatial variability in Pacific Northwest Pseudo-nitzschia populations. Fourth Symposium on Harmful Algae in the U.S.

2007 Parker, M. S., Marchetti, A., Lin, E. O., Armbrust, E. V. Iron storage by ferritin in marine pennate diatoms – Part I: Discovery of a ferritin gene in diatoms and comparative sequence analyses. American Society of Limnology and Oceanography annual meeting.

2007 Marchetti, A., Parker, M. S., Lin, E. O., Armbrust, E. V. Iron storage by ferritin in marine pennate diatoms – Part II: Regulation of gene expression and ecological significance. American Society of Limnology and Oceanography annual meeting.

2007 Mock, T., Robison, M., Berthiaume, C., Iverson, V., Rodesch, M., Splinter-BonDurant, S., Holtermann, K., Samanta, M., Sussman, M., Armbrust, E. V. Whole genome expression profiling of the marine diatom Thalassiosira pseudonana: New insights into the molecular underpinnings of global-scale processes. American Society of Limnology and Oceanography annual meeting.

2007 Durkin, C.A., Mock, T., Armbrust, E.V., Unexpected presence, diversity, and expression of chitin synthase genes in diatoms. American Society of Limnology and Oceanography annual meeting.

2006 Lau, W. W. Y., E. V. Armbrust, R. G. Keil. Response and succession of glycolate-utilizing bacteria during a spring phytoplankton bloom. American Society of Limnology and Oceanography annual meeting.

2006 Rynearson, T. A., R. A. Horner, E. V. Armbrust. Metapopulation structure in the planktonic diatom Ditylum brightwellii: Insights into diatom ecology and evolution. American Society of Limnology and Oceanography annual meeting.

2006 Mock, T., M. Robison, M. Rodesch, C. Berthiaume, K. Holtermann, E. Armbrust, and M. Sussman. Use of tiling microarrays to map transcripts and to determine gene expression patterns in the diatom Thalassiosira pseudonana. American Society of Limnology and Oceanography annual meeting.

2006 Parker, M S, E. V. Armbrust, E. O. Lin, B. D. Jenkins, V. S. Iverson, H. Rodrigues, R. Kudela. Gene expression associated with domoic acid production and silicate limitation in the diatom Pseudo-nitzschia australis. American Society of Limnology and Oceanography annual meeting.

2005 von Dassow, P, R. N. Bearon, E. V. Armbrust, and D. Grunbaum. Searching for sex while avoiding suicide: The perspective of the centric diatom Thalassiosira weissflogii. American Society of Limnology and Oceanography summer meeting.

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2005 Rynearson, T. A., E. V. Armbrust, C. P. Sarason, M. Kawase, M. Genetics or environment? Regulation of diatom blooms in puget sound, WA. American Society of Limnology and Oceanography annual meeting.

2005 von Dassow, P., T. W. Petersen, E. V. Armbrust, Evidence for a history of polyploidy in the diversification of centric diatoms of the genus Thalassiosira into different aquatic habitats. American Society of Limnology and Oceanography annual meeting.

2004 Armbrust, E. V. Diatom genome project: New insights into diatom physiology and ecology. American Society of Limnology and Oceanography annual meeting.

2004 Rynearson, T. A. and E. V. Armbrust. Springtime succession of planktonic diatom blooms: Same species, different populations?

2004 Wieneke, S. G., E. V. Armbrust, R. J. Olson, D. J. McGillicuddy. Diversity of eukaryotic nanoplankton in Sargasso Sea Eddies. American Society of Limnology and Oceanography annual meeting.

2003 Rynearson, T.A. and E.V. Armbrust. Population differentiation in a marine phytoplankton: dispersal vs. selection. Annual Joint Meeting of the Society for the Study of Evolution, Society of Systematic Biologists, and American Society of Naturalists

2003 Armbrust, E. V., A. Shalapyonok, and R. J. Olson. Genetic diversity of eukaryotic pico- and nano-phytoplankton communities in the Sargasso Sea. American Society of Limnology and Oceanography annual meeting.

2003 Rynearson, T. A. and E. V. Armbrust. Genetic diversity and selection during a spring diatom bloom. American Society of Limnology and Oceanography annual meeting.

2003 Lau, W. and E. V. Armbrust. Monitoring bacterial response to phytoplankton-excreted glycolate using molecular probes and the role of glycolate in influencing bacterial community structure. American Society of Limnology and Oceanography annual meeting.

2002 Armbrust, E. V. and T. A. Rynearson. Diatom population dynamics: Molecular identification of genetically and physiologically distinct subpopulations of the centric diatom, Dytilum brightwellii. American Society of Limnology and Oceanography annual meeting.

2002 Rynearson, T. A., and E. V. Armbrust. Who’s blooming? Genetic diversity of a centric diatom during a Spring bloom. American Society of Limnology and Oceanography annual meeting.

2001 Armbrust, E. V. Diatom genomics: Important considerations for genome sequencing of ecologically relevant organisms. Phycological Society of America annual meeting.

2001 Rynearson, T. A., E. V. Armbrust, and J. A. Newton. Genetic diversity and population structure in the diatom Ditylum brightwellii in Admiralty Inlet, Puget Sound. Pacific Estuarine Research Society annual meeting. Tatiana was awarded “best student presentation” for this talk.

2001 Armbrust, E. V. Diatom photorespiration and microbial cycling in the upper ocean. Biotechnology Investigations-Ocean Margins Program.

2001 Paker, M. S. and E. V. Armbrust. Expression of a photorespiratory gene in the centric diatom Thalassiosira weissflogii. American Society of Limnology and Oceanography annual meeting.

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2000 Koumandou, V. and E. V. Armbrust. Expression patterns of three sexual-specific genes in the centric diatom Thalassiosira weissflogii. Phycological Society of America annual meeting.

2000 Parker, M. S. and E. V. Armbrust. Identification of a glycine decarboxylase gene in Thalassiosira weissflogii: A probe for photorespiration in diatoms. Phycological Society of America annual meeting.

2000 Armbrust, E. V. and H. M. Galindo. Characterization of sexual reproduction genes from different species of centric diatoms. American Society of Limnology and Oceanography annual meeting.

2000 Armbrust, E.V. and T. A. Rynearson. Linking the High School Classroom to University Research: A Focus on High School Teachers. American Society of Limnology and Oceanography annual meeting.

1999 Armbrust, E.V. and V. Koumandou. Identification of genes expressed specifically during sexual reproduction in a marine centric diatom. 2nd European Phycological Congress.

1999 Rynearson, T. A. and E.V. Armbrust. Genetic diversity of a centric diatom in stable and dynamic environments of a fjord ecosystem. 2nd European Phycological Congress.

1999 Armbrust, E.V. Identification of sexual-specific genes in a centric diatom. Fifth International Chrysophyte Symposium.

1999 Armbrust, E. V. Identification of genes expressed during the onset of sexual reproduction in a centric diatom. American Society of Limnology and Oceanography annual meeting.

1999 Rynearson, T. A. and E.V. Armbrust. Population Structure of diatom blooms using DNA fingerprints. American Society of Limnology and Oceanography annual meeting.

1998 Armbrust, E.V. Identification of genes expressed when a centric diatom undergoes sexual reproduction. Phycological Society of America annual meeting.

1998 Rynearson, T.A. & E.V. Armbrust. Genetic Fingerprinting of Diatoms. American Society of Limnology and Oceanography annual meeting.

1996 Armbrust, E.V., P.F. Ferris. Characterization of ezy2, a zygote-specific gene potentially involved in the uniparental inheritance of chloroplast DNA. Presented at the Seventh International Conference on the Cell and Molecular Biology of Chlamydomonas.

Posters (since 1996)

2014 Van Tol, H. M., S. A. Amin, E. V. Armbrust. A model system for diatom-flavobacterium interactions. American Society for Limnology and Oceanography Annual Meeting.

2014 Hennon, G. H., E. V. Armbrust, C. Berthiaume, R. L. Morales. Gene expression patterns of the diatom T. pseudonana acclimating to elevated CO2. American Society for Limnology and Oceanography Annual Meeting.

2013 Chiang, T., M.S. Parker, J. Koester, C. Berthiaume, V. Iverson, W. Ruzzo, E. V. Armbrust. Whole genome statistical analysis of seven strains of Thalassiosira

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pseudonana reveal highly structured natural genetic variations. American Society for Limnology and Oceanography annual meeting.

2012 Durkin, C. A., S. J. Bender, K. Gaessner, E. V. Armbrust. Uptake limitation of silicic acid in costal diatos controls cellular silicification. American Society for Limnology and Oceanography annual meeting.

2010 Ribalet, F., J. Swalwell, D. Schruth, C. D. Fox, and E. Virginia Armbrust. Development of an underway flow-cytometer for continuous observations of phytoplankton distributions in the ocean. American Society for Limnology and Oceanography annual meeting.

2010 Swalwell, J., F Ribalet, V Armbrust SeaFlow: A New Flow Cytometer for Continuous Observations of Phytoplankton Distributions in the Ocean. American Society for Limnology and Oceanography annual meeting.

2010 Bender, S J, M S Parker, V Armbrust. The coupled effects of light and nitrogen source on the urea cycle in the marine diatom, Thalassiosira pseudonana. American Society for Limnology and Oceanography annual meeting.

2010 Mock, T., A. Toseland, S. Moxon, M. Parker, E. V. Armbrust, V. Moulton. Linking species-specific transcriptomics with metatranscriptomics to obtain new insights into the activity of marine diatom communities. Society for General Microbiology.

2010 Gibson, R. E., C. A. Durkin, T. Turong, E. V. Armbrust, T. Mock. SsR1, a novel DNA binding protein that regulates growth and cell morphology in the marine diatom Thalassiosira pseudonana. Society for General Microbilogy.

2009 Bailey, A. J. S., K. Hubbard, E. V. Armbrust. Spatial distribution of Pseudo-nitzschia ITS1 types detected with ARISA in Glacier Bay, Alaska. 5th Annual Harmful Algal Bloom Meeting.

2009 Ellis, C. H., K. A. Hubbard, L. F. Fernandes, B. A. Keafer, M. Richlen, D. L. Erdner, D. J. McGillicuddy, D. M. Anderson, and E. V. Armbrust. Diversity and distribution of Pseudo-nitzschia species off the east coast of the United States. 5th Annual Harmful Algal Bloom Meeting.

2009 Parker, M. S., D. M. Schruth, C. T. Berthiaume, V. S. Iverson, G. Rocap, B. Jenkins, S. S. Bates, and E. V. Armbrust. Genome sequencing of the toxin-producing diatom Pseudo-nitzschia multiseries. 5th annual US Harmful Algal Bloom meeting.

2009 Morales, R. L., Lin, E. O., Frazar, C. D., Iverson, V. S., Morris, R. M., Armbrust, E. V., Next generation SOLiD sequencing methods: an overview. American Society for Limnology and Oceanography annual meeting.

2009 Swalwell, J. E., G. J. van den Engh, E. V. Armbrust. A position sensitive detector for sheathless flow cytometery. American Society for Limnology and Oceanography annual meeting.

2009 Orellana, M. V, Ramos, H. F., Eastham, A. Q., Shannon, P., Bare, C., Armbrust, E. V., Baliga, N. Thalassiosira pseudonana proteome, response to different nitrogen sources. American Society for Limnology and Oceanography annual meeting.

2008 Marchetti, A., E.V. Armbrust, S. Bonnet, Z. Johnson, V. Lance, D. E. Varela. Biogeochemical controls on phytoplankton composition and productivity assessed by C, N, and Si utilization in the easterna and western equatorial Pacific. American Society

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of Limnology and Oceanography annual meeting. 2008 Hubbard, K. A., N. S. Banas, E. V. Armbrust. Pseudo-nitzschia community structure in

the estuary, Puget Sound, WA. American Society of Limnology and Oceanography annual meeting.

2008 Bender, S. J. and E. V. Armbrust. Understanding the connection between differing nitrogen sources and the urea cycle in the diatom, Thalassiosira pseudonana. American Society of Limnology and Oceanography annual meeting.

2007 von Dassow, P., Iglesias-Rodriguez, D., Rehm, E., Armbrust, E. V., van den Engh, G. Use of polarization flow cytometry to quantify calcification in single coccolithophorid cells. American Society of Limnology and Oceanography annual meeting.

2007 Koester, J.A. and E. V. Armbrust. Physiological variation in the marine diatom Ditylum brightwellii. American Society of Limnology and Oceanography annual meeting.

2006 Hubbard, K., E. V. Armbrust, G. Rocap. Molecular detection and diversity of Pseudo-nitzschia populations from the North American West Coast. 12th International Congress on Harmful Algae. Note: poster was awarded “best student poster.”

2006 Robison, M., T. Mock, M. Samanta, M. Rodesch, V. Iverson, C. Berthiaume, K. Holterman, E. V. Armbrust, M. Sussman. The identification of genes related to silicon metabolism in the marine diatom, Thalassiosira pseudonana using tiling microarrays. Cold Spring Harbor annual meeting.

2006 von Dassow, P. and E. V. Armbrust. Searching for sex in the sea? Possible Molecular Markers of Diatom Sexual Stages. American Society of Limnology and Oceanography annual meeting.

2006 Hubbard, K. A., E. V. Armbrust, K. E. Holtermann, M. C. Horner-Devine, G. Rocap. Use of Automated rRNA Intergenic Spacer Analysis to Assess Pseudo-nitzschia Diversity in Pacific Northwest Waters. American Society of Limnology and Oceanography annual meeting.

2006 Armbrust, E. V., G. Rocap, T. Mock. In silico reconstruction of anabolic pathways in the plastid of Thalassiosira pseudonana. American Society of Limnology and Oceanography annual meeting.

2005 Hubbard, K. A., G. Rocap, and E. V. Armbrust. West coast pseudo-nitzschia species

distinguished by polymorphisms in the internal transcribed spacer 1 (ITS1). The third symposium on harmful algae in the U.S.

2005 Lau, W., E. V. Armbrust, and R. G. Keil, Changes in diversity of a bacterial glycolate utilization gene (glcd) during a spring phytoplankton bloom. American Society of Limnology and Oceanography summer meeting.

2005 Hubbard, K. A., E. V. Armbrust, M. V. Orellana, T. W. Petersen, B. D. Bill, B. D. Molecular and physiological differentiation of Pseudo-nitzschia pungens from coastal and inland waters of Washington state. American Society of Limnology and Oceanography annual meeting.

2003 Kudela, Raphael M., E. Virginia Armbrust, Bethany Jenkins, G. Jason Smith, and Jonathan Zehr. Development of Molecular and Biochemical Signatures for the

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Detection of Toxin Production in Pseudo-nitzschia spp. Under Nutrient Stress. U.S. ECOHAB meeting.

2003 O’Brien, S. G., E. V. Armbrust, and R. J. Olson. Eukaryotic nanoplankton diversity in Sargasso Sea eddies. American Society of Limnology and Oceanography annual meeting.

2002 Hamill, B. J., J. Cherrier, M. S. Parker, E. V. Armbrust, and R. G. Keil. Effects of diatom photorespiration on surface-ocean DOC. American Society of Limnology and Oceanography annual meeting.

2002 Lau, W. W., E. V. Armbrust, and R. G. Keil. Development of a molecular marker for monitoring bacterial utilization of phytoplankton released glycolate. American Society of Limnology and Oceanography annual meeting.

2002 Parker, M. S. and E. V. Armbrust. Photorespiratory gene expression under changing light conditions in the centric diatom Thalassiosira weissflogii. American Society of Limnology and Oceanography annual meeting.

2001 Rynearson, T. A., E. V. Armbrust, and J. A. Newton. Genetic diversity and population structure in the diatom Ditylum brightwellii in Admiralty Inlet, Puget Sound. National Estuarine Research Society annual meeting.

2001 Parker, M.S., E. V. Armbrust, W.W.Y. Lau, R. G. Keil, B. J. Hamill, J. Cherrier. Photorespiration in the centric diatom Thalassiosira weissflogii. Biotechnology Investigations-Ocean Margins Program.

2001 Rynearson, T. A. and E. V. Armbrust. Genetically distinct populations of the centric diatom Ditylum brightwellii identified using microsatellite markers. American Society of Limnology and Oceanography annual meeting.

2000 Lau, W. W. Y., P. A. Jumars, E. V. Armbrust. Genetic diversity and potential functions of hindgut microbes in a deposit feeding Thalassinid shrimp. EOS 60:146.

1999 Campbell, A. M., A.J. Coble, T.H. Ch'ng, K.M. Russo, E.M. Long, and E.V. Armbrust. Molecular characterization of a mutation that causes failure of agglutination during mating in Chlamydomonas reinhardtii. 96th Annual Meeting of the North Carolina Academy of Science. Elon College, NC

1998 Armbrust, E. V. Identification of two genes encoding extracellular matrix proteins expressed during the onset of sexual reproduction in a centric diatom . American Society for Cell Biology.

1998 Campbell, A. M., A. J. Coble, T. H. Ch’ng, L. D. Cohen, E. M. Long, K. M. Russo, and E. V. Armbrust. 1998. Molecular characterization of a mutation that disrupts agglutination in Chlamydomonas. American Society of Cell Biology annual meeting.

1998 Crump, B., E. V. Armbrust, J. Baross. Ecology and phylogeny of bacterial communities in the Columbia River Estuary. American Society of Limnology and Oceanography.

1998 Crump, B., E. V. Armbrust, J. Baross. Hydrological control of particle-attached and free-living bacterial communities in the Columbia River estuary. American Society of Microbiology annual meeting.

1998 Coble, A. J., E. V. Armbrust, E.M. Long, A.M. Campbell. Molecular characterization of a mutation that disrupts sexual reproduction in Chlamydomonas reinhardtii. NCUR.

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1997 Armbrust, E.V. and A.J. Murkowski. Characterization of a zygote-specific gene potentially involved in the uniparental inheritance of chloroplast DNA. Molecular Biology of the Cell 8:444a.

1997 Armbrust, E.V., E.M. Long, and A.M. Campbell. Possible involvement of a cation ATPase in Chlamydomonas flagellar agglutination. Molecular Biology of the Cell 8:443a.

1996 Goodenough, U., P. Ferris, J. Woessner, E. V. Armbrust. Genes of the mating type locus in Chlamydomonas. Phycological Society of America annual meeting.