wp 6 database improvement and enrichment leading partner : baz germany, e. maul short to long term...
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WP 6 Database improvement and enrichment Leading partner : BAZ Germany, E. Maul
Short to long term objective: European Vitis databasecomprising
Genres081 dataGrapeGen06 data
Establishment of a procedure for a continuous follow up even after termination of the project
Council Regulation (EC) N°870/2004 AGRI GEN RES #008
GrapeGen006
- ECPGR European Central Crop Database ECPGR Vitis Database: http://www.ecpgr.cgiar.org/Databases/Crops/Vitis.htm
- Adaptation of homepage to Prunus Database Recommendation of the ECPGR Fruit Network Coordinating Group (March 2006)
- Adoption of the EURISCO-format
- Creation of a partner specific access with option for on-line working (deletion, additions, changes of records)
- Download options
European Vitis Database: modifications
Passport descriptorsCharacterisation and evaluation descriptorsSSR-marker descriptors----------------------------------------GENRES #081----------------------------------------AGRI RES GEN #008
http://www.bioversityinternational.org/networks/ecpgr/links/ecpgr_search.asp
The European Prunus database
The European Prunus database
The European Prunus database
Partner dataUpdating of • Adresses• Collection specifications• Scientists involved• Expertise
Passport data Replacement of the former format by the Multicrop Passport Data
Descriptor Format of the EURISCO Database Update of the Genres081 partners collection’s passport data,
addition of further collection’s passport data
European Vitis Database: 1st year activities
Partners of Genres#081: verification of adresses
Partners of Genres#081: verification of information
1 2 3 4 5 6 7TRUENESS_TO_TYPE INSTCODE ACCENUMB COLLNUMB COLLCODE GENUS SPECIES SPAUTHOR
yes DEU098 DEU98-1993-296 Vitis vinifera L.not checked DEU098 DEU98-2001-075 Vitis vinifera L.not checked DEU098 DEU98-2001-076 Vitis vinifera L.not checked DEU098 DEU98-2001-077 Vitis vinifera L.not checked DEU098 DEU98-2001-078 Vitis vinifera L.not checked DEU098 DEU98-2001-079 Vitis vinifera L.
yes DEU098 DEU98-1993-297 Vitis vinifera L.not checked DEU098 DEU98-2001-080 Vitis vinifera L.not checked DEU098 DEU98-2001-121 Vitis vinifera L.
FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS
Passport data
0 - TRUENESS_TO_TYPEyes, no, not checked
1 - INSTCODE (Institute code)Example: GRC051
2 - ACCENUMB (Accession number)Example: DEU098-1993-296
3 - COLLNUMB
4 - COLLCODE
5 - GENUS. Example : Vitis
6 - SPECIESExample : vinifera
7 - SPAUTHORExample: L.
8 9 10 11 12SUBTAXA SUBTAUTHOR CROPNAME ACCENAME ACQDATE
var. wine grape ARBST BLAU 1993var. OESTERREICHISCH WEISS 2001var. wine grape VELTLINER BRAUN 2001var. wine grape VELTLINER GRAU 2001var. wine grape VELTLINER ROT 2001var. wine grape TROYEN 2001var. wine grape ARBST BLAU 1993var. wine grape;table grape MADELEINE VIOLET 2001var. FURNER HOTTLINGER 2001
FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS
Passport data
8 - SUBTAXAExample: ssp. sylvestris
9 - SUBAUTHOR
10 - CROPNAME (Common crop name – utilization)Wine grape, table grape, raisin grape, rootstock (ornamental grape, wild grape). If multi-use exists, different uses have to be separated by semicolon without spaces.Example: wine grape;table grape
11 - ACCENAME (Accession name)Designation of the accessionExample: Ruländer
12 - ACQDATE (Acquisition date)Date on which the accession entered the collection as YYYYMMDDExample: 1968Example: 20020620
FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS
Passport data
13 14 15 16 17 18 19 20 21ORIGCTY COLLSITE LATITUDE LONGITUDE ELEVATION COLLDATE BREDCODE SAMPSTAT ANCEST
300 PINOT NOIR CLONE300300300300300300 PINOT NOIR CLONE300300
13 - ORIGCTY
14 - COLLSITE
15 - LATITUDE
16 - LONGITUDE
17 - ELEVATION
18 - COLLDATE
19 - BREDCODE (Breeding institute code)FAO Institute Code of the institute that has bred the materialExample: AUT024
20 - SAMPSTAT (Biological status of accession)Example: 110) Natural = Vitis vinifera ssp. sylvestrisExample: 300) Traditional cultivar/landrace = Gouais blancExample: 412) Hybrid = Geilweilerhof 3-28-46Example: 500) Advanced/improved cultivar = Rathay
21 - ANCEST (Ancestral data) Example: Pinot x HeunischExample: Pinot noir open pollinationExample: Pinot noir self pollination
FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS
Passport data
22 23 24 25 26 27 28 29 30 31COLLSRC DONORCODE DONORNUMB OTHERNUMB DUPLSITE STORGAE REMARKS COLLDESCR BREDDESCR DONORDESCR
40 2040 2040 2040 2040 2040 2040 2040 2040 20
22 - COLLSCR (Collecting/acquisition source) 40) Institute, Experimental station, Research organization, Genebank (most cases)
23 - DONORCODE (Donor institute code)
24 - DONORNUMB (Donor accession number)
25 - OTHERNUMB (Other identification (numbers) associated with the accession)
26 - DUPLSITE (Location of safety duplicates)
27 - STORAGE (Type of germplasm storage) 20) Field collection (most cases)
28 - REMARKS (Remarks)
29 - COLLDESCR (Decoded collecting institute)
30 - BREDDESRC (Decoded breeding institute)
31 - DONORDESCR (Decoded donor institute)
FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS
Passport data
32 33 A B C DDUPLDESCR ACCEURL VARIETY NAME BERRY COLOR COUNTRY OF ORIGIN OF THE VARIETY Bredyear
PINOT NOIR N FRAOESTERREICHISCH WEISS B AUT
VELTLINER BRAUN B HUNVELTLINER GRAU G AUTVELTLINER ROT RS ITA
TROYEN N FRAPINOT NOIR N FRA
MADELEINE VIOLET N FRAFURNER HOTTLINGER RG ITA
32 - DUPLDESCR (Decoded safety duplication location)
33 - ACCEURL (Accession URL)
Vitis specific descriptors:
A. Variety NameName of the variety, after it has been identified with certainty Example: Prokupaz
B. Berry colorColor of the berry skin: green, green-grey, green-rose, green-red, green-black, grey, grey-rose, rose, red, red-violet, black, black-red, black-grey Example: green-rose
C. Country of origin of the varietyCode of the country in which the variety originatedExample: ARM
D. BREDYEAR (Year of crossing)Year in which the variety was created as YYYYExample: 1926
Passport data
The following data files are provided on CD:
• Partner specific passport data from Genres#081 (extracted from the European Vitis database) in the MCPD-format. „vitis_id“ and „partner#accession_number“ have to be maintained and not to be changed.
• For non Genres#081 participants an empty data file in the MCPD-format.
• Example file from DEU098.
• FAO WIEWS Institute Code-list. All partners are requested to verify their adress, phone and fax-numbers and e-mail adress.
• Multicrop passport descriptors
• Passport data and descriptor recording rules for the compilation of the European Vitis Database (Appendix II of the ECPGR Vitis working group meeting, Palic June 2003)
Characterization and evaluation data
Characterization and evaluation data
Characterization and evaluation data
Characterization and evaluation data
Deadline:
Sending of partner specific information andpassport data in the MCPD Format
Before June 30, 2007
European Vitis Database: 1st year activities
WP 6 Database improvement and enrichment Leading partner : BAZ Germany, E. Maul
Characterization and evaluation data
Characterization / evaluation search criteria:
Search
Select descriptor condition value
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Characterization / evaluation search criteria:
Search
Select descriptor condition value
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1=closed
3=half open
5=fully open
Grapevine field collection of CZE041 Research Station for ViticulturePraha 6 – RuzyneCZ - 26718 Karlstein
Multi-crop passport descriptor data, primary and secondary descriptor data, photos
Search criteria:•field collection
sorted by: accession number accession name
berry coloryear of plantationtrueness-to-typeVitis speciescountry of originusevirus infection
•accession number•accession name
Multi-crop passport descriptor data of CZE041sorted by accession number
etc.
ACCESSION NUMBER ACCESSION NAME
BERRY COLOR
YEAR OF PLANTATI
ONTRUENESS
TO TYPEVITIS
SPECIES COUNTRY OF ORIGIN USE
DESC
DATA
PHOTOS
CZE041-1998-002 ABOURIOU NOIR N 1999 yes Vitis vinifera France wine grape x xCZE041-1998-003 NADHERNA DE CURTILE B 1999 yes Vitis vinifera France table grape x xCZE041-1998-004 MUSKAT AGAPANTHE N 1999 yes Vitis vinifera France table grape x xCZE041-1998-005 HEDVABNE ZELENE B 1999 yes Vitis vinifera Italy wine grape x xCZE041-1998-006 AFUS ALI B 1999 yes Vitis vinifera Lebanon table grape x xCZE041-1998-007 ALBALONGA B 1999 yes Vitis vinifera Germany wine grape xCZE041-1998-008 ALIBERNET N 1999 yes Vitis vinifera Ukraine wine grape x xCZE041-1998-009 ROYAL N 1999 yes Vitis vinifera France table grape x xCZE041-1998-010 ALVARNA RS 1999 yes Vitis vinifera Moldova wine grape xCZE041-1998-011 ANDRE N 1999 no Vitis vinifera Czech Republic wine grape x xCZE041-1998-012 ANNA MARIA B 1999 yes Vitis vinifera Italy wine grape x xCZE041-1998-013 ANTIGONA RG 1999 yes Vitis vinifera Serbia and Montenegro wine grape x xCZE041-1998-014 ARMAS B 1999 yes Vitis vinifera Romania wine grape xCZE041-1998-015 RYZLINK AROMATICKY B 1999 yes Vitis vinifera France wine grape x xCZE041-1998-016 ATTILA B 1999 yes Vitis vinifera Hungary wine grape xCZE041-1998-017 AUGUSTA LUISE B 1999 no Vitis vinifera Germany table grape x xCZE041-1998-018 AURELIUS B 1999 yes Vitis vinifera Czech Republic wine grape xCZE041-1998-019 AUXERROIS BLANC B 1999 yes Vitis vinifera Germany wine grape x xCZE041-1998-020 BACCUS B 1999 yes Vitis vinifera Germany wine grape x xCZE041-1998-021 BANATSKI MUSCAT B 1999 yes Vitis vinifera Romania table grape xCZE041-1998-022 BEAUTY SEEDLES B 1999 yes Vitis vinifera USA table grape x
new accessions can be added
Primary and secondary descriptor data of the accession Ryzlink Rynsky
Modifications, additions can be carried out
OIV Code N° descriptor notation
OIV 001 Young shoot: shape of the tip 7=openedOIV 003 Young shoot: intensity of anthocyanin coloration on
prostrate hairs of the shoot tip1=none or very low
OIV 004 Young shoot: density of prostrate hairs of the tip 5=mediumOIV 006 Shoot: attitude (before tying) 7=semi droopingOIV 007 Shoot: color of dorsal side of internodes 1=greenOIV 008 Shoot: color of the ventral side of internodes 2=green OIV 015 - 1 Shoot: distribution of anthocyanin coloration on the
bud scales2=basal
OIV 015 - 2 Shoot: intensity of anthocyanin coloration on the bud scales
3=weak
OIV 016 Shoot: number of consecutive tendrils 1=2 or lessOIV 051 Young leaf: color of the upper side (leaf 4) 3=bronzeOIV 054 Young leaf: density of erect hairs between main
veins on the lower side of blade (4th leaf )
7=high
OIV 067 Mature leaf: shape of blade 2=wedge-shapedOIV 068 Mature leaf: number of lobes 3=fiveOIV 070 Mature leaf: area of anthocyanin coloration of main
veins on upper side of blade3=up to the 1st bifurcation
OIV 074 Mature leaf: profile 1=flatOIV 075 Mature leaf: blistering of upper side of blade 1=absent or very weakOIV 076 Mature leaf: shape of teeth 5=mixture between both sides straight (note 2)
and both sides convex (note 3)OIV 079 Mature leaf: degree of opening / overlapping of
petiole sinus4=slightly overlapped
OIV 080 Mature leaf: shape of base of petiole sinus 3=V-shapedOIV 081 Mature leaf: particularities of petiole sinus 1=noneOIV 081 - 1 Mature leaf: presence of teeth in the petiole sinus 1=noneOIV 081 - 2 Mature leaf: petiole sinus base limited by vein 1=not limited
new descriptors can be added
Designation of germplasm accessions to AEGIS
Responsibilities: • Ensure the long-term conservation according to agreed quality standards• Provide for safety duplication in another genbank, preferably in a different country• Facilitate access and availability• Documentation of passport, characterization and evaluation data• Keep the aboce mentioned information updated in the ECPGR Vitis database