wp2: ontology enrichment methodologies
DESCRIPTION
Carole Goble (IMG) Robert Stevens ( BHIG ) Mikel Egaña Aranguren (BHIG) Manchester University Computer Science: IMG: Information Management Group. BHIG: Bio-Health Informatics Group. WP2: ONTOLOGY ENRICHMENT METHODOLOGIES. INTRODUCTION. Current bio-ontologies not very expressive. - PowerPoint PPT PresentationTRANSCRIPT
WP2: ONTOLOGY ENRICHMENTMETHODOLOGIES
Carole Goble (IMG)
Robert Stevens (BHIG)
Mikel Egaña Aranguren (BHIG)
Manchester University Computer Science:IMG: Information Management Group.BHIG: Bio-Health Informatics Group.
INTRODUCTION
Current bio-ontologies not very expressive.
Ontology enrichment (migration): add richer semantics.
ODPs, Normalisation, ULO, ...
Text mining.
Ontology enrichment in CCO.
CURRENT BIO-ONTOLOGIES
Difficult for Biologists to exploit expressivity and hence reasoning.
Label-centered, not model centered: “positive regulation of ubiquitin ligase activity
during meiotic cell cycle” (GO)
“acetylcholine biosynthetic process” (GO)
Ontologies from text mining or database schemas.
ENRICHMENT
From non-expressive to expressive ontologies.
Progressive.
Already explored implementations: Available in http://gong.man.ac.uk/:
Biological Ontology Next Generation (BONG).
Ontology Processing Language (OPL).
Based on syntactic/semantic matching.
Other implementations in the future: integration of text mining in enrichment.
ENRICHMENT
Normalisation.
Ontology Design Patterns.
Upper Level Ontology.
Text mining/learning.
Combination of different ontologies.
ONTOLOGY DESIGN PATTERNS
Analogous to OOP design patterns: “succesfull modelling recipes”.
Abstraction of semantics: better and easier modelling.
Documented and repeatable modelling.
CCO new possible ODPs: “interaction”, “taxonomy”, ...
ONTOLOGY DESIGN PATTERNS
Simple Example: Value Partition.
NORMALISATION
Hard-coded polyhierarchy: Difficult to maintain: manually add/remove all the
relationships.
Not expressive: the computer cannot tell why A is a subclass of B.
NORMALISATION
Let the reasoner do the job:
SUMMARY - BENNEFITS
Tooling.
More expressive CCO: Reasoning.
Querying.
Maintenance.
Area not explored in Knowledge Management: publications.