www.boldsystems.org barcode of life data systems (bold) riadul mannan biodiversity institute of...
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www.boldsystems.org
BARCODE OF LIFE DATA SYSTEMS (BOLD)
Riadul MannanBiodiversity Institute of Ontario
www.BOLDSYSTEMS.org
1 Architect, 2 Hardware Engineers
4 Programmers, 4 Data Managers
BOLD SYSTEMS450 CPUs, 100TB storage
Generator powerRemote backup
Barcode Records for Fungi , Protists, Plants and Animals 834.5Kspecimens, 69.6K species, 2.1K institutions : 5.1K users
Features of BOLD
Quality AssessmentsPrimer Registry
Alignment Viewer/EditorIntegrated Help
Taxon ID TreeDistance Summary
Sequence CompositionNearest Neighbour Summary
Accumulation CurvesMulti-Marker ID Engine
Bibliography SupportWeb Service API
Workflow *Analytics Integration
Specimen
Tissue Sample
ExtractDNA
PCR Amplify Sequence
Photograph
Collection Data
Web-Accessible Data andDNA Barcode
The Analytical Chain
Specimen
Taxonomy
Identifier
IDs
Institution
Collectors
Desc.
Lat/Lon
Country
Collection
Lab Data
Trace
Primers
Audit Trail
Marker 1
DNAMarker 2
Markers 3Caption
Metadata
Copyright
Image/Video
Literature
BOLD Data Model
BOLD Multi-Marker Data
Tag Cloud of markers
Total Markers on BOLD : 45
Project Management
Data ManagementSpecimen Sequence
Data Management
1 2
3
4
Primer Registry
Total Primer – 633Public – 325Private – 308
Data Analysis & Visualization
Sequence Analysis - Taxon ID Tree
Alignment Browser
Features:Flexible labeling
Variability of positionsMapping amino acids
Future Features:Highlighting diagnostic positionMapping to secondary structuresWeb based sequence editing
Identification System
Managing Lab Data - LIMS
LOCATING SAMPLES
OwnerSample TypeSampleidsProcessidsKeywordsMicroplate Label
Sample Lookup
Controlling Liquid Handling Robots
PCR Success Report
Gel image
Sliced by system
Management And Monitoring
LIMS - Non Lab User
Data Publication