year one, foundation block. professor ahmed adeel dr. malak el-hazmi dr. fawzia al-otaibi dr...

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MICROBIOLOGY PRACTICAL CLASS YEAR ONE, FOUNDATION BLOCK

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Page 1: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

MICROBIOLOGYPRACTICAL

CLASSYEAR ONE, FOUNDATION BLOCK

Page 2: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

THIS MICROBIOLOGY PRACTICAL CLASS IS DESIGNED BY:

Professor Ahmed Adeel Dr. Malak El-Hazmi Dr. Fawzia Al-Otaibi Dr Ahmed Albarrag

© King Saud University, Kingdom of Saudi Arabia (2010).

Page 3: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

MICROBIOLOGY

Page 4: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 5: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

G- bacilli

Page 6: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 7: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

7

Gram-positive rods

Gram-negative rods

Gram-positive cocci

Gram-negative cocci

Page 8: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 9: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 10: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Gram positive cocci in chain

Streptococci Gram positive cocci in clusters

Staphylococci Rx

Page 11: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

A gram-stained smear of a CSF sample from a 3 year old child seen in the emergency department presenting with fever and neck stiffness.

Gram-positive diplococci & pus cells Streptococcus pneumoniae

Page 12: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

This is a bacterium isolated from a child with sore throat and tonsillitis .

A: Describe the Gram stain

B: Describe the shape and arrangement of the bacteria

Gram positive

Cocci in chains

Page 13: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Following is the Gram stained smear of an organism isolated from a wound infection.

Describe what you see in the slide above.

What is the likely organism ?

Gram-positive cocci in clusters

Staphylococcus aureus

Page 14: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 15: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Gram negative cocci

(Diplococci )

e.g Neisseria

Gram negative bacilli e.g E. coli Salmonella

Page 16: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Following is the Gram-stained smear of from urethra of a 25 –year old male complaining of urethral discharge

Describe the Gram stain of the intracellular bacteria Gram negative

Describe the shape of the bacteria cocci ( diplococci)

Page 17: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Describe the Gram stain of this organism:

Gram negative

Describe its shape

bacilli ( rods )

Page 18: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Thiosulphate citrate bile salt sucrose ( TCBS) is a selective medium

a differential medium

Chocolate Agar

MacConkey Agar

an enriched medium

blood agar

a general culture medium

Microbial growth or culture media

Page 19: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 20: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

This is a general culture medium used for culture of bacteria.

Blood agar

Page 21: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 22: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Identification of streptococci by hemolytic reaction

Alpha-hemolytic Streptococcus colonies

Gamma-hemolytic Streptococcus colonies

Beta-hemolytic Streptococcus colonies

Page 23: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

This is a blood agar growing beta hemolytic streptococci.

Page 24: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

This culture was grown from a sputum specimen of a 60 year old man complaining of cough, fever and chest pain.

α hemolytic streptococci on blood agar

Page 25: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

S. viridans

Optochin test

S.pneumoniae

Page 26: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 28: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of
Page 29: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Sensitivity testing

Page 30: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

VIRUSES

Page 31: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Helical Virus Icosahedral Virus

Page 32: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Classification

Page 33: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

electron micrographs Electron microscopy ;

Herpes virus Adenovirus

Rabies virus Influenza Viruses

Page 34: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Herpes simplex virus -1 : Herpesviridae

Enveloped virus

Icosahedral capsid

d.s DNA genome

Loose envelope

Page 35: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

These are electron micrographs of a virus

Q1: Name this virus

Enveloped virus , Icosahedral capsid, d.s DNA genome

Q2: Describe its structure.

Herpes virus

Page 36: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Adenovirus : Adenoviridae

Nonenveloped virus

Icosahedral capsid

d.s DNA genome

Only V with fiber

Page 37: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

This is an electron micrograph of a virus

Q1: Name this virus

Nonenveloped virus,

Icosahedral capsid & d.s DNA genomeQ2: Describe its structure.

Adenovirus

Page 38: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Rabies virus: Rhabdoviridae

Enveloped virus

Helical capsid

s.s RNA genome

Bullet shape

Page 39: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

This is an electron micrograph of a virus

Q1: Name this virus

Enveloped virus , Helical capsid

& s.s RNA genomeQ2: Describe its structure.

Rabies virus

Page 40: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Influenza Viruses : Orthomyxoviridae

Enveloped V & spikes

Helical capsid

Segmented s.s RNA

Pleomorphic shape

Page 41: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Influenza Viruses

Enveloped Virus with spikes ,Helical capsid ,Segmented s.s RNA

This is an electron micrograph of a virus

Q1: Name this virus

Q2: Describe its structure

Page 42: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Helminths Protozoa

Mulicellular Specialized cells

UnicellularSingle cell for all function

Round worms (Nematodes) cylindrical, unsegmented Flat worms 1-Trematodes: leaf-like, unsegmented. 2-Cestodes: tape-like, segmented

Amoebae: move by psudobodia. Flagellates: move by flagella. Ciliates : move by cilia Apicomplexa (sporozoa) Tissue parasites

Classification of Parasites

Page 43: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Ascaris adult

Ascaris lumbricoides (roundworm)

Page 44: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Taenia saginata

Page 45: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

The Trematodes

Page 46: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Giardia lamblia trophozoite

Two nuclei, each with central karyosome Four pairs of flagella

Page 47: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Giardia lamblia cyst

•Mature, infective cyst, containing 4 nuclei •Note a straight axoneme running longitudinally

Page 48: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

ARTHROPODS OF MEDICAL IMPORTANCE

Class Insecta ΕήθΤϟ Class Arachnida ΐ ϛΎϨόϟ

ΕΎϳήθϘϟClass Crustacea

Muscid flies:housefly,Tsetse fly

Myiasis-producing flies .

Scorpions ΏέΎϘόϟ Water flea (Cyclops)

Mosquitoes ν ϮόΒϟ: Anopheles, Aedes Culex

Spiders ΐ ϛΎϨόϟ

SandflyϞϣήϟΏΎΑΫ

(Phlebotomus) Ticks: ΩήϘϟ hard, soft

Black fly(Simulium) Mites α Ϯδϟ Fleas Κϴ ήΒϟϏ -Sarcoptes

scabiei,

Lice(Pediculus,Phthirus) ϞϤϘϟ

-dust mites

Bugs:Cimex,Triatoma ϖΒϟ Bees ϞΤϨϟ

Page 49: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

LICELouse(singular) , Lice (pleural)

Pediculus humanus

Page 50: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Phlebotomus ( sand fly

Page 51: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Mosquitoes :Cosmopolitan , more than 3000 species.

Larval and pupal stages always aquatic

Mouth parts in female adapted to piercing and sucking blood.

Genus and species distinguished by morphology of adult and deveopmetal stages.

Page 52: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Based on morphology, name the two fungal structures in A and B?

A: Yeast B: Mould fungi e.g. Candida e.g. Aspergillus

A B

Fungi can be divided to two types based on morphology

Page 53: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

Name the two fungal structures in A and B?

A: Budding yeast cells B: Branching Fungal hyphaee.g. Candida e.g. Aspergillus

A B

Microscopic appearance of yeast and mould fungi

Page 54: YEAR ONE, FOUNDATION BLOCK.  Professor Ahmed Adeel  Dr. Malak El-Hazmi  Dr. Fawzia Al-Otaibi  Dr Ahmed Albarrag © King Saud University, Kingdom of

END