11.4 hardy-wineberg equilibrium. equation - used to predict genotype frequencies in a population...
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11.4 Hardy-Wineberg Equilibrium
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Equation - used to predict genotype frequencies in a population
• Predicted genotype frequencies are compared with Actual frequencies– used for traits in simple dominant-recessive systems
"The Hardy-Weinberg equation is based on Mendelian genetics. It is derived from a simple Punnett square in which p is the frequency of the dominant allele and q is the frequency of the recessive allele."
p2 + 2pq + q2 = 1
11.4 Hardy-Weinberg Equilibrium
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• q2 = # homozygous recessive/entire population
• p2 = # homozygous dominant/entire population
• Take the square roots to find p & q• If the predicted genotypes match the actual
genotype frequencies than population is in equilibrium
• If it is not in equilibrium– it is changing - evolving
11.4 Hardy-Weinberg Equilibrium
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Chi-Square Test
• Determines whether the experimental data fits the results expected
• For example– 290 purple flowers – 110 white flowers – Close to a 3 : 1 ratio– How do you know for sure?
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Goodness of Fit
• The chi-square test is a “goodness of fit” test– Answers the question of how well do
experimental data fit expectations• Ex: self-pollination of a heterozygote
– The null hypothesis is that the offspring will appear in a ratio of 3 dominant to 1 recessive.
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Formula
• First determine the number of each phenotype that have been observed and how many would be expected
• “Χ” - Greek letter chi• “∑” - sigma
– Sum the following terms for all phenotypes• “obs” is the number of individuals of the given
phenotype observed• “exp” is the number of that phenotype expected from
the null hypothesis• Must use the number of individuals and NOT
proportions, ratios, or frequencies
exp
exp)( 22 obs
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Example• F2 offspring
– 290 purple and 110 white flowers– Total of 400 offspring
• We expect a 3 : 1 ratio.• To calculate the expected numbers
– Multiply the total offspring by the expected proportions – Expected Purple = 400 * 3/4 = 300 purple– Expected White = 400 * 1/4 = 100 white
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• Purple obs = 290 and exp = 300• White obs = 110 and exp = 100• Plug into the formula: 2 = (290 - 300)2 / 300 + (110 - 100)2 / 100 = (-10)2 / 300 + (10)2 / 100 = 100 / 300 + 100 / 100 = 0.333 + 1.000 = 1.333 • = chi-square value
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Reasonable• What is a “reasonable” result is subjective and
arbitrary• For most work a result is said to not differ
significantly from expectations if it could happen at least 1 time in 20
• That is, if the difference between the observed results and the expected results is small enough that it would be seen at least 1 time in 20 over thousands of experiments
• “1 time in 20” can be written as a probability value p = 1/20 = 0.05
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Degrees of Freedom
• The number of independent random variables involved
• Simply the number of classes of offspring minus 1
• Example: – 2 classes of offspring: purple and white– Degrees of freedom (d.f.) = 2 -1 = 1.
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Critical Chi-Square
• Critical values for chi-square are found on tables, sorted by degrees of freedom and probability levels
• If your calculated chi-square value is greater than the critical value from the table, you “reject the null hypothesis”
• If your chi-square value is less than the critical value, you “fail to reject” the null hypothesis – Accept that your genetic theory about the expected ratio is
correct
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Chi-Square Table
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Using the Table
• Example of 290 purple to 110 white• Chi-square value of 1.333, with 1 degree of freedom• 1 d.f. is the first row, and p = 0.05 is the sixth column• Critical chi-square value = 3.841• Calculated chi-square = 1.333
– less than the critical value, 3.841– “fail to reject” the null hypothesis– An observed ratio of 290 purple to 110 white is a good fit
to a 3 to 1 ratio
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Another Example: from Mendelphenotype observed expected
proportionexpected number
round yellow
315 9/16 312.75
round green
101 3/16 104.25
wrinkled yellow
108 3/16 104.25
wrinkled green
32 1/16 34.75
total 556 1 556
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Finding the Expected Numbers
• Add up the observed offspring to get the total number of offspring
• Example: 315 + 101 + 108 + 32 = 556• Multiply total offspring by the expected
proportion --expected round yellow = 9/16 * 556 = 312.75 --expected round green = 3/16 * 556 = 104.25 --expected wrinkled yellow = 3/16 * 556 = 104.25 --expected wrinkled green = 1/16 * 556 = 34.75
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Calculating the Chi-Square Value
X2 = (315 - 312.75)2 / 312.75 + (101 - 104.25)2 / 104.25 + (108 - 104.25)2 / 104.25 + (32 - 34.75)2 / 34.75 = 0.016 + 0.101 + 0.135 + 0.218 = 0.470.
exp
exp)( 22 obs
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D.F. and Critical Value• Degrees of freedom • 4 - 1 = 3 d.f.• 3 d.f. and p = 0.05
– critical chi-square value = 7.815• Observed chi-square (0.470) is less than
the critical value– Fail to reject the null hypothesis– Accept Mendel’s conclusion that the
observed results for a 9/16 : 3/16 : 3/16 : 1/16 ratio
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Chi-Square Table
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Mendel’s Yellow vs. Green Results